miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCCCTCTGTAAAGAAATATAA
species: Triticum turgidum subsp. durum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|39729316|gb|AJ612389.1|AJ612389 AJ612389 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du 

TCCCTCTGTAAAGAAATATAA
|||||||||||||||||||||
AGGGAGACATTTCTTTATATT

EST sequence (targeted fragment marked with yellow):
GAATTCGGCACGAGGCAATGAAGCATTTGCTGAAGATACCTCCGAGAGAGAGCATAAAGCCTGAGCAAGGTTCTGGTTGAAGCTTCTATCCACAAAAGAAAGGCACATCTATGAAGTGCCAGTTGGAGGCTTCAAGCCTCATCAAGTCCATGATTGTTATTCTCCCTCCGTAAAAGAATATAAGAGCATTTAGATCACTACTATAGTGATCTAAACACTCTTATATTTCTTTACAGAGGGAGTACGTAGTAATTGTGTTGCGTACTTACCCCAGCTGACATATTCTTTTCGTTATATTTTTTCGAATTCATTTTTATTTTTTCACCAACATGTATACTTTATCCACTAGGTGGAATGTTGTCACTGGATAGTATTTGATGATGAAATTACAGATACGCGAAAAAAAAAAAAAAAAAAAAAACTCGAG


gi|164699814|gb|FD468666.1|FD468666 BOT_4_3b BOT Triticum turgidum subsp. durum cDNA clone BOT_4_3b, mRNA sequence 

TCCCTCTGTAAAGAAATATAA
||||||.||||||||||||||
AGGGAGGCATTTCTTTATATT

EST sequence (targeted fragment marked with yellow):
GGCCGAGGTACAAGGCTACAAAATAATTGCTTCGCTTTTGCAAGTTTTAGAAGAGAAGAAAAATTCTCACAAGGTCTTACAACATTAAGCCAAACAAAATAAAGAATCGGTTGAGGACATTAATGTTATCTCTTATGCAATAGTATTTTCGTGGTGTGATCAGGAAACAATGCATAAGTGGAAGAAAAAAAAAGAGTCATCATCTAAAAAAACTAATATATAGTGCAACATGCCAATAAATGCATATCTCATGCTTTATTCAGTTTTTATTTTTCAAATAAAACTTGTGCAGCACAAAAATTGGCTTCGGCGAGAAGTATTTATTTTAACACCATCAATTACTTAATTCCTGTGACGCGATATAAAAATCTAGAACACCGGCATGGAAGGCAATGTTTGCTTTGCACTTATATTGAGGCAGGGGGCGCCAAATTTGTATCCCTCTTTACATGCCCATGCTGGGGCTGCTTGACAACCAATTCGCAAATACCTGGATGGCCTACTCATAGCCTAAAAGGGTCACCCCAAAGGTCCAAACTGCAGAGGTTTCCTGAGACCAGAATCTCCTGCACAAACTTAATCATCAATTTCACTGAAGACTACTCATCTGCTCCATCTGTAAAGAAATATAAAAACGTTTAGATCATTATTTTATTATATTTCTTTACGGAGGGAGTGCTTTTTTGTAATTAAGTGCTGAACCAATATTAATGTGATCTACCGATGCAGGCTGGTCACCGACATCCCGGG


gi|39730390|gb|AJ613463.1|AJ613463 AJ613463 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du 

TCCCTCTGTAAAGAAATATAA
||||||.|.|| |||||||||
AGGGAGGCGTTCCTTTATATT

EST sequence (targeted fragment marked with yellow):
GAATTCGGCACGAGGCACAAGCTAATCAAGCTCTCAGCTCCTTCCCAGCTCCACGGTTTCCAGCAAGCAAACCGAAGCACTAGATCCTCGATGGCTCGCGTGGCACNTGGTCGCCGTGTTCGCCGTGCTCGCGGCACTGGCGGTGGCGGAGATGGCGTCCGGGGCGGTGACCTGCGGCGACGTGACGTCCGCCGTCGCGCCGTGCATGTCCTACGCGAGGGGGCAAGCGTCGGCACCCTCGGGGGCGTGCTGCAGCGGGGTGAGGACCCTGAACGCCAAGGCGTCCACCCCGGCCGACCGGAAGGCGGCGTGCAACTGCCTCAAGAACCTGGCGGGGTCGGGCATCAGCATGGGTAACGCCGCCAACATCCCCGGCAAATGCGGCGTCTCCGTCTCTTTCCCCATCAACACCAAAACCAACTGCAACAACCTTCACTAAGTTATCTACCAGCATCATCATCACACCAGGCTAGCTAGCCCACTCGGTGTCTACTGTTGCTGCTCTCTGCGTGTGTTCGTTGTTGTTTTCTCCATGTGTTCGACCTCCATCTGTTGCCGTTAATACAGATCGAGCAGATTACTGATCGAATCATCAATAAAATAATGTGTTGAGCTTAAGTTTTATGACATTCGCTGTTATCTATAATGATTATAAACTACTCCATCTGTAAAGAAATATGAGAGTGTTTAGATCACTATTTTGCTTTTATATTTCCTTGCGGAGGGAGTAGTTTTCTTGCCCCGCATGTTGCTGCTGG


gi|49603756|gb|AJ717174.1|AJ717174 AJ717174 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

TCCCTCTGTAAAGAAATATAA
||| |||||||||||||||||
AGGAAGACATTTCTTTATATT

EST sequence (targeted fragment marked with yellow):
GTTAAGAGAATAACTTGAGGTGTGTCTTTTTATCGAGCCAACGAGGCCACACTCTTTATCAGTTAGAAGTATTAGAGTTGCCATCCCGTGAAGTGGGTTAAGGCACATGAAAGGTGAACATGTGGCACAGAATAATGGAATCGGATTCTTTTATCTGGATTGGGTTGTTTATTTTGCACTTTGGCGATGCACCTTGAAAATATTGCACGATTGATCACTAGAGAAAGTTCAGATCAGACTGATATTTAACAATTCACCTTATAAGAATGAAATGGCATGCACACTCTTTACTAACTGATAACTTAGACCAGAGAAGAGAACCAGAATCTAGCTTCTAAAAGGTACTCCCTCTGTAAAGAAATATAAAAGCGTTTATTAGATCACTGAAGTAGTGATCTAAATGTTCTTATATTTCTTTACAGAAGGAGTAACTTGCTAGATGGCATGTATAAGAAAGCAGCTTGAAGTTGGTCATTTTCTTCCTTTTGTCNGTAGCAGTTCTATCGTTTATCTTCATTTTTTCTCTTGTTACCTAAGATTTGCCACAAAGTGGCATTTTTCATTTTCAGGAGCTTACTGAAAATGGATGTTGCTTTCAGGAACCCTTTGTGAGCATTCCCGAAGACAGAATCCGCGAGGCTCTGNAAAGTTGTTCTAGACACAAGAAACCCNCCCCGGTGCTTATTCACTGCAAGCGTGGAAAGCATCGAACTGGCTGGGTTGTTGGATGCTTGAGGAAACTGCAC


gi|49603143|gb|AJ716561.1|AJ716561 AJ716561 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

TCCCTCTGTAAAGAAATATAA
|||||||||||||||||||||
AGGGAGACATTTCTTTATATT

EST sequence (targeted fragment marked with yellow):
GAATTCGGCACGAGGGAGAAGTGGTCGAGCTGGAGGCGTACAGGCAGGGCACCCAGAAGATGGAGCTATGCAACAAGTGGGAGGGTGGCGCCTGCTCCTACGGCGGCCGGTGCCGGTTCGCGCACGGCCTGCAGGATGATGGTTTCTTAATTTCGTTGACTAACCAGGGAGTTCAAGGATGATGACTGAAAGTTTTGTCATTACTGGTTAACACTTGGTGTCTGAAAATGACCGTCATCCCTTAGTGGGCAAAGATGATTTTGTTGAACAGTTTCAGTATATGTTACATACCGTATTCTTTCCAATGTAGAAGGTAGCAGCTGACTCTGCATTGCTGTGGTGCTTATATTATGGAGTAGTTAAGTTATTCTCCATCTGTACAGAAATATAAGAGCAAAACACTTATATTTCTTTACAGAGGGAGTATTCCACAATATTTAGGATGTCAACTTTCAGCCAATTGGTTAGTGGATGTAAGAGCATCTCTAGCCGATCCTTAAAAATCTTTAGAGGATAGTCCAGTCGGATACAAGCTGACTGCTCCTCAGGAAGGCTTGCTGTAGGTTACCAAGCACTAGCAGGCGAGGTATGCACTTGAATTTATTTGCTCTGTATTATGCTATCTTTTTGATCTGCCAGCTAATTTATTGCTTCAAAAAAAAAAAAAAAAACTCGAG


gi|9426659|gb|BE428816.1|BE428816 MTD011.B07F990617 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone 

TCCCTCTGTAAAGAAATATAA
||||||||||||  |||||||
AGGGAGACATTTGATTATATT

EST sequence (targeted fragment marked with yellow):
TGGTGGTTGGTGGTGAGCTGACTCATGCTGTCTTATGGCAGTACCTATGTTGGTGTCATGTCTAGGAAATGGTGGCGTCCTAATGCTGTCTATGACTTGGAATTCCGTTTCTTCTGTTCGATGAGTTAGGTCTTATTGGCTGTGTAATGTTGCTTCTGAATTCAGTGGTGGTGGAGGCCGGAGGCGGATGGTCAGGCGTATTGGCTTTGTGTTGAGGCTGCTGGATTAAGAGCCTTCTTTTTTACTCCCTCTGTAATCTAATATAAAGGCGTCTAGAATACTAAAGTAGTGATCTAAAGGCTCTTATATTAGTTTACAGAGGGAGTAGCTCTAAGCGCTGTTTTGGAGCTGTCATGTTTGGACTTGGATGTAGTGTTGTGTTTGTTGGAGTTTGGTT


gi|49603113|gb|AJ716531.1|AJ716531 AJ716531 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d 

TCCCTCTGTAAAGAAATATAA
| ||||||||||  |||||||
AAGGAGACATTTGATTATATT

EST sequence (targeted fragment marked with yellow):
GACGAGGCCCTGCCTGGGTGGGAGGAGGACATTTCGTCGGTGCGGGACTACGATGATCTCCCGGAGACCGCGCGTCTGTACGTGGAGAGGATAGAGGAGCTGGTTGGTATCCCTGTCCATTACATCGGTGTCGGACCTGGGCGTGATGCTCTCATATACAAATAGGGGATTTTGTCAGACATGTCTCTTATTATCTACTCCCTCCGTAAACTAATATAAGAGTGTTTAGATTACTACTTTAGTGATCTAAACGTTCTTATATTAGTTTACAGAGGAAGTATACAAGATCCGCATTTGAGCAAATGATTCAACCCAAGTGCGTCCTTTACTGCTTCTACCANANAAAAAAAAANAANANAAAAAAAAAAAAAAACTCGAG


gi|39728890|gb|AJ611963.1|AJ611963 AJ611963 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du 

TCCCTCTGTAAAGAAATATAA
|||||| |||||||||| |||
AGGGAGCCATTTCTTTACATT

EST sequence (targeted fragment marked with yellow):
GCTACGCGGCCGGGTCGAGGTGGAGGCAGACGACGGTGAGCAGGAAAGACCACCGGGAGAAAGGGGACGAGACGGACGGCTTCTACGGCGGCATCAGGAAGCTCCAGACCAAAGACGAGATCTCAACGTGGCGGAGATTCTGGCCGGTGGACGTGCTCAGCTGAACATGGACATATATCTGCCGCTCCGTTGTACAGCTGCTTGCCGGTGGTCGCCGAGCTGCGGCGTTCCTCTGAAGAATGCACCCACCTGGTGGTGCTGCTGCTGCTGCCGCGCTTCTGAATGTTTTTGGTACTACTGGAAAATTCAGATGGGTACGCCGGATTCCAGAGTCCCAGCAGCAGTGAGAGGCAACGATAGGCTTGTATGTGAATGATGATGTACAGCTCTACCAAGTCTTCAGTTTGCACCGTGCTGCTGCTGGATCCTAGACTAGTATTCCCTCTGGAAACAAATATAAGAGTGTTTAGAACACTATTTTAGTGATCTAAACGCTCTTACATTTCTTTACCGAGGGAGTAGATTTCTGGTATAGACCGATGTCCAGTTGTATTTTTTCGCAGTCATTGTAGCCAGNTAGTAGTATATCCAGTTACGCGGGNTG


gi|164699642|gb|FD468494.1|FD468494 BOT_6_4f BOT Triticum turgidum subsp. durum cDNA clone BOT_6_4f, mRNA sequence 

TCCCTCTGTAAAGAAATATAA
||| |||||||||||||||||
AGGTAGACATTTCTTTATATT

EST sequence (targeted fragment marked with yellow):
ACCGAAAGATACTCCTGTCGTCCCCGGGATGTCGGTGACCAGCCTGCATCGGTAGATCACATTAATATTGGTTCAGCACTTAATTACAAAAAAGCACTCCCTCCGTAAAGAAATATAATAAAATAATGATCTAAACGTTTTTATATTTCTTTACAGATGGAGCAGATGAGTAGTCTTCAGTGAAATTGATGATTAAGTTTGTGCAGGAGATTCTGGTCTCAGGAAACCTCTGCAGTTTGGACCTTTGGGGTGACCCTTTTAGGCTATGAGTAGGCCATCCAGGTATTTGCGAATTGGTTGTCAAGCAGCCCCAGCATGGGCATGTAAAGAGGGATACAAATTTGGCGCCCCCTGCCTCAATATAAGTGCAAAGCAAACATTGCCTTCCATGCCGGTGTTCTAGATTTTTATATCGCGTCACAGGAATTAAGTAATTGATGGTGTTAAAATAAATATTTCTCGCCGAAGCCAATTTTTGTGCTGCACAAGTTTTATTTGAAAAATAAAAACTGAATAAAGCATGAGATATGCATTTATTGGCATGTTGCACTATATATTAGTTTTTTTAGATGATGACTCTTTTTTTTTCTTCCACTTATGCATTGTTTCCTGATCACACCACGAAAATACTATTGCATAAGAGATAACATTAATGTTCTCAACCGATTCTTTATTTTGTTTGGCTTAATGTTGTAAGACCTTGTGAGAATTTTTCTTCTCTTCTAAAACTTGC


gi|39730474|gb|AJ613547.1|AJ613547 AJ613547 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du 

TCCCTCTGTAAAGAAATATAA
.|||||||||||  ||.||||
GGGGAGACATTTGATTGTATT

EST sequence (targeted fragment marked with yellow):
GAATTCGGCACGAGGCCCTGACGCGTATGTCCGCATCATCGGATTCGACAACATGCGCCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAAGCCACCGGGCTGCGAGGAGTCCGGCAAGGCCTAAACAGCTCACTCACGACAGGTCATATATAAAGTGCCATTGCAGTTTTGTCAACTCTGACATTGCTTTGGGTTTTCCTTCTCCATTTATCTTTCTTATTTGTTCCTAAGAATATGTGTATGTCCATGTTCATGTACCAACATGGCTCGAGAAAGCATGCTCGTATGAGAATGCTATCGGTGGCTATGTATATGAACGGACGCATAATATTATACAATATGTCGACTATATACGTTTTAATGGTAACCAATGGAAAATATCTCCACCACCGTGCTTATTACTTCCTCTGTAAATTAATATAGAGCGTTTCGATCACTGCTTTAGTGATCTAAACGCTCTTATGTTAGTTTACAGAGGGGATACTTTTTATTAATAGTGGACGGTTGGACGTTGTCTTAGTTTGTATCCCTGAAATGTATGGTTGTAAACATGGCCCCACAGAATGTTGGCCAACAATATAATATTAGTTGTATTTAAAAAAAAAAAAAAAAAAAACTCGAG