| mature miRNA: TTATTTTGGGACGGAGGGAGT species: Triticum turgidum subsp. durum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|197667131|gb|FL577935.1|FL577935 KL-232 KI7LS Triticum turgidum subsp. durum cDNA, mRNA sequence TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): ACATTTAAGGTAGAACAAGGTTTGCAATAAACATCATTCAATCTTTAGAACAAAGAAGAGGTGCCTCAGTGCATGGATACATGTGTTCCTCTGCTTGCGATTTTGCAGAGGCAATGGGCACTGGGTCTTGCATTTCCACATTGAGGCGGAGTCTTACAACATAAATTTAAATGCAGAGAACAAAGCAGGAACTACAAAGACGGGTTTATGCAAGAGAAAGGAAGGACACTGACACAATATTTTTGAGTAATAATATGTATTCCCTCCATCCGAAAATACTTGTTGGAGAAATGGATGTATCTAGACGTATTTTATTTCTAGATACATCCATTTTTATGCATTTCTACGACAAGTATTTCCGGACGGAGGGAGTATAAAGTTTATCAACGAAAGCTTAGGACAGCTCGAGCAAGAAAAGTAGAAAAGAAGTCATGATACAATCCACCAGGCCAGTCATCGGTCAGCATTTATCTGATAAGTA | |||||||||
gi|164701047|gb|FD473448.1|FD473448 P12S_A07_SP6_049 frumisis1 Triticum turgidum subsp. durum cDNA clone P12S_A07_SP6_049, mRNA TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): ATGTGTATGACAGCTACTCCCTCCGTCTCAAAATATAAGAGCGTTTTTGGCACTACACTAGTGTAAAAAATGCTCTTATATTTTGGGACGGAGGGAGTATGTTTGTTTGGAG | |||||||||
gi|164699262|gb|FD468223.1|FD468223 BOT_4_2b BOT Triticum turgidum subsp. durum cDNA clone BOT_4_2b, mRNA sequence TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): GGCCGAGGTACAAGCAGTGTTGAAATCCTTTTTGCATAAAATCTACAGGAGGAGGAAATAGGACTATTCTTGCATACAAAAAGATTGTCGGATGGAACAACTTCTTTCCTGTCGGCATGTGCAAGATGAATAACACTCCCTTCTTCCCAAAATAACTGTCGTTGTTTCAGTTCAAATTACAGAGGGAGTATTACTTATGAATGGTCCAGAGTTTTTGCATACCATGTAAAAGTATTAAATAAAATGTACCTGCCCGGGCGGCCGCTCGAAA | |||||||||
gi|9426291|gb|BE428448.1|BE428448 MTD007.B06F990616 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): ACAGAACTGAGGTAGATTGGATGTACCTGTGGGATCTTGCATTGAGGAAAGGCCGTTTGCAGTCTATCAAGTACATCCTCAAGAAAAGTTTGATGAAGTTGCCTATTTTCAACTGGGCATTTCACATTATTGAGTTTATTCCAGTAGAGCGGAATTGGGAGGTTGACGAACCACTAATCCGAAGAAGGCTTTCTCAACTGAAGTACCCCAAGGATCCCCTTTGGCTTGCAGTTTTTCCAGAAGGCACTGATTATACCGAGAAGAAATGCATCAAAAGTCAAGAGTATGCGGCAGAGCATGGTTTGCCTATTCTGAAAAATGTCCTCCTTCCCAAGATAAAGGGTTTCAATTGCTGCCTGCAAGAGCTGAGGAGTAACTTGGATGCTGTT | |||||||||
gi|39728415|gb|AJ611488.1|AJ611488 AJ611488 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): GCGGAGCAGCACCAGGCGTACCTGCCGACCTTCCTCTTCAACCCGCCCAACGTGTCACCGATGCCGGCCTTCAACCTCCTCAACCCGTCGGAGGTGGCGAAGAAGGACGTGTTCACGGGGAGCTACGTCGTGAAGGCGGCGCTCGGGGCCACGGTCATGAGGTCATACTGCACCCGCATGGAGAAAGTGTTCCAGCGCCTCTCCCCGTGGGTGCCGGAGCTGTACGTGAACGAGAGGGACATCATTTGCCAGGGTTTCATCGACTACTTCGAGCAGCGGCAGAAGGTGGAGGAGCGCATCGCTGGCGTCGGCAGGGCAGCCATGAAGCTGTCGTATCGCGACATGCTCTCCTCCCTCATCGGCAGCAGCAAGGAGCAGCCGCACCTCTTGCCGTCCGCGAGGCTGTGGAAGAACTCCAACACAACATTCGGCACGCACGACCTCATGCAGTGGTGGAGGCCGGACAGCGAGCTAAAGCTCAGCTGCAGGAAATTCACCTACCCCAGAGCATGAGATATCTATGTTATATTATACTCACTCTATCCTAAAATAAGTGTCTCAAGTTTAGTAGTATTACCTAAACGCGTGCCTAGCTACTCCTGCTTGTGTATCTCATGATATAACAGGACGTATCTGACCCGAGGAAGAGCATGTACATGGAGTATCTGATCATACTAGATCATCCTTGATAGTACATACATTGGGCAGATATTAGTTAGGACAGGGCAGCAAGCTGATCGAGACCATCTANGGAGCGAGGTTTTNC | |||||||||
gi|49603300|gb|AJ716718.1|AJ716718 AJ716718 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGCCAAGAAGCAACGCAGCAGAAAGCGTCGTCTTCGGAAGAACAGCAGCAGGAAAAGGTAATCAACGCCTCTTCTCTCCGCTTGAATTCCTTCCTGCTGGCCATGGCCATGGATGCATGTCTGTGTTAGTGTTTCCGTTGGCTGTTTTCAATCCAATCTATAAGGCGCAGCTTTTGTGGATGGAACTGCAGTAGAGTTCTCATACGTACTCTGTTTGTGGAACATATAATGGACACTGCAAATCGTGTTCAATCACTTCTCAAGAAAACATGGATGCAGATACACCCATTGGTTTTCGAAAAGAGAAAGGTGTGATACCTCCCCGGTGTAGCTAGGGACACCTCTATGAACAGTAAATTCGAAAAAGTAGAAGAAAAATCCAATAAATTCTGAAACTTTGCGACGTCAAGCGTTTTAGGTTCGCAAATTTTCATAACAAAACACTATTAAGTAGAGGAAGGTGTACACATGAGTTTCTGATTTCAGTGCTAAAAGTGCTCAAAACTTTGAGCACCGAAATCTTTTTCTTGTTTAGAGCTCCTTGATTGTTTTTTCTGCATGAAAACTTGCAAGCACCTCCNAAGTTTCAGCATATTTGATGTCACAAAGTTTTAGACTCTTTTTCATTTTGTTTTCTACTTTATTTGAATTTATTGNTCATAGAGGGTGTATCTACACCCGAGGCCCGGAGTTGACAAACCATTCTCGAACTTTTCAAAAATAATTAGTANCTAGTACTCCTTCTGTCCTGAAATAAGTCTTTAATTTTG | |||||||||
gi|9426355|gb|BE428512.1|BE428512 MTD007.H02F990616 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): AGGAGATTTGACAAACAGGTGCGATATGAGTCCCGCAAAGCTCGTGCGGACAGCAGGTTGAGAATCAAGGGCCGTTTTGCAAAGGCAAATCAGAGTTAAGTCTTGACTTTGCAGTATACTATTTTGCATCTTGGACAGAAGGAAGGACACTAATTAGGAGTGAGTGCAGATGATACATAAGGCGTGAACATTTTGTTGGTCTTCAGTTGGGCAGATGTTCATGTACAATCTGAATAATGTACTCCTTCTGTCTTAAAATAAGTGTCTCAAGCTTAGTACAATAAAAATTTATACTAAACTTGAGACACTTATTTTAGGACGGAGGGAGTACGTTGCAACATATGGGCTATATTAATGTTTTGGGGGGAGTTGTTAGTCCAACCCTTGTATATAGTT | |||||||||
gi|49603475|gb|AJ716893.1|AJ716893 AJ716893 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): GTATTTATCTGTGTCATAAAAAAGTGATATTTACCTATATACTATTCCTCCGTCCCATAATAAGTGTCTCAACTTTGTAGTAACTCTAGTACAAAGTTGTACTAAGCTTGAGACAGTTATTTTGGGACGGAGGGAGTACTATATGGCTCTCGTAGCCGTACGTGTGACCTACTACATACCCTAGCTACTGCATGTATTGTTCTAAAAAAAGGCTAATGCATGTACATGCAGTTAAATAAAATGGGCATCCTGTACAGTAAGCTGGAGTACTTAGCACTGGCTACGTACTCCATGCGATGGATAGATGGATCCCTGGCCTTTGCATGATCCCTGTATTTCATTGTACTGTATAATGTATCATATCTGTTGTTTGTACAAAAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|197665522|gb|FK827367.1|FK827367 KI7RS-114 KI7RS Triticum turgidum subsp. durum cDNA similar to Glutamine-rich protein, mRNA TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): ACTCCCTCCGTCCCAAAATGTAAAACTTTTTTGACACTATGATAGTATCAAAAAACGTCTTACATTTTGGGTCGGAGGAAATACTAGTTTTAAATTGCGTGTTTACAGCCACAATGACAGGACAAGTTATCTTCAAAACATATATAATCAGATAACTAGAGACAAGTTACCAGGCACCAGCCGATGCATCCTCAAGCCTTTTCTCAAGTCGAGTGCACCTGTCTTGCCTAGAGTTCAGATCAGATTGCCACCATCGACGCCGTA | |||||||||
gi|39732277|gb|AJ615350.1|AJ615350 AJ615350 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): GGTTCAACACGCTCGCAGAGCTATTAGACAGTTTTTCTGATGTCGGCACGGATCAGATCATCGAGGTGATGGTCCGTTCGTCGACCTCGGCCGGCCCTTGTTCGGATGAAATGGTTGAGAACAGGAAGCAGATATTGAGCAGGGTCTTCCTCAAAAGCCTCCAGACTGATGACACNTGTCTTCAGGAAGGTGTCTCGATCTGTTTACNTGCGCGTTCCGTGCAGTCGCCCTGGGTGGCAACGGGACGAAGGGCAGGAAACTCGCCGAGGCGGCCCTGGGGCGCATCGGAGCGACAAAGTTGACCGACCGCGTAGTGAAGGCAGCGGAAGTGCTGATCAGAGTAGCAACAATATCAGAGCAGGTTCATGGCCCGTGGTACAGTCATCTCCTGTAAATGACTTGATTTGTTTTGTGAATCCGTGGTGCTGTGTAAACAGGGTGGGTGATCGTAGCCGCTGGGGCGCACATCGCCGTGCATCCCCGGTGGAAAATTCTGCAATAGTTTTCTTCTACGATCACTGGAACAGTTCTTCTGTTTTTGTCCGTGACCACACGCTGGCTTTTTGTGCACAGTTATCTACTCCTTCGGTCCCAAAATAAGCTAGTACAAAAAAAAAAANAAAAANCTCGAG | |||||||||