| mature miRNA: TTTTGGGACGGAGGGAGTAT species: Triticum turgidum subsp. durum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|39731885|gb|AJ614958.1|AJ614958 AJ614958 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): GCGCTGGTGGTGAACGTGGGCGACTTCCTGCAGCTGGTGTCCAACGACAGGTTCAAGAGCCCGGTGCACCGCGTGGTGTCCAGGAGCGTGGGGCCGCGGGTGTCGGTGGCGTGCTTCTTCAGGGCGGACGGCGCGACGGTGTGCGCCCCGGTGGTCGTCGACGGGAGCGGCCCGCCGCGGTACAAGAGCGTCAAGGCGGAGGAGATGCTCTGCGTGTCCAACACACAGACCCGGCTCAACAACTTGAGGCTCTAGCTAGCTAGCTAGCATCCGTCCGTTCAAAAGAAATAACTAGCAATAAACTTCCTATTGAGGCAAAACCGAATATATTTACAGTTTAGGTGTGATTCATCGGATCTCAGATCATTGTATATATATGCGAGTACCTACCTACTCCCTCCGTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGG | |||||||||
gi|197724119|gb|FM208486.1|FM208486 FM208486 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. d TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): GTCTATCTATCGACGCGTGTAAATTTTGTGTTTGTCCCTCCCTGCCGATGCTTCCTGCTACTCCCTCCGTTCCAAATTACTCGTCGTAGTTCCTAGCTCAGAAGTGTGATTCGATTTTTCATTTTGGAGTTTGATGGTGTTGCTGTGACCACTATGGCAGAATTCGAATAAATTTGTTTAGTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|197666987|gb|FL577874.1|FL577874 KL-175 KI7LS Triticum turgidum subsp. durum cDNA, mRNA sequence TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): CTAGCCAGCAACCATGGGCGGCGGCGGTTGCCAAGGAAAGGGTTGGGTCAGGGAGGAGGGGGAACTGCTTCGATCTAGGTTTCCAGCAAGCAAGATTAGAGAAAAAAAATTGAGTCGTTCGACCCAGAAAACACGACGAGTCGTGACTAGTCGCTCGAGTCGCTCGAGTCGCTCGACTCATACCATGAGTCGAGTCGCTAGGCTGAGTCGACCCTGCCAGTGTGACTCATCGACTAGTCGACGACTAGTCGCGACTAGTCGAGCGACTCGAAAACAGAGGTCAGATTTATAACTACAAGCCTTTTCACTAGCATAGAACAGGTCTACGCTGTTGCTACCATTTTTTGAAGAATTGTGTCAAATAGGCTACTTCGGGTTGTGGAAATTTTGACAAAATACAATATAAAAAGGGTTTCAAACACATGGCAGGATTTCTACGTAACTACAGCAGTATTTAACAAAGATGCTGTTTAATTACTACCTCCGTTCCAAAATAATTGAAGTTCCGGATTTGT | |||||||||
gi|164703392|gb|FD474010.1|FD474010 P9_H05_T7_044 frumisis1 Triticum turgidum subsp. durum cDNA clone P9_H05_T7_044, mRNA sequen TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): CGGCCGAGGTAGGCAATCAATGATCTAGACAAGGAGCTTGAGAACCTGAAGCAAGCTTTTGAGGATGAGAAGACCCGATTCGAGGAAAGGATGAAGCAGGGCTACTAGGCCAAGGGTGTTCTGGATGCTGACGTGAAACCTTCCATGCTACTCCCTCCGTTCCAAAATAGATGACCCAACTTTATACTAACTTTGCACCTGCCCGGGC | |||||||||
gi|164703543|gb|FD473693.1|FD473693 P7_A10_T7_069 frumisis1 Triticum turgidum subsp. durum cDNA clone P7_A10_T7_069, mRNA sequen TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): GGCCGCGGGAATTCGATTAGCGTGGTCGCGGCCGAGGTAGGCAATCAATGATCTAGACAAGGAGCTTGAGAACCTGAAGCAAGCTTTTGAGGATGAGAAGACCCGATTCGAGGAAAGGATGAAGCAGGGCTACTAGGCCAAGGGTGTTCTGGATGCTGACGTGAAACCTTCCATGCTACTCCTTCCGTTCCAAAATAGATGACCCAACTTTATACTAACTTTGCACCTGCCCGGGC | |||||||||
gi|164701047|gb|FD473448.1|FD473448 P12S_A07_SP6_049 frumisis1 Triticum turgidum subsp. durum cDNA clone P12S_A07_SP6_049, mRNA TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): ATGTGTATGACAGCTACTCCCTCCGTCTCAAAATATAAGAGCGTTTTTGGCACTACACTAGTGTAAAAAATGCTCTTATATTTTGGGACGGAGGGAGTATGTTTGTTTGGAG | |||||||||
gi|49603782|gb|AJ717200.1|AJ717200 AJ717200 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): GGTTCTGAACATTGTAGCGTTTTGTCAATGTTGTTACTTTTTGCTACAAAGTATGTGGAATGGCATCTTTATGATGTTCCTGTTTGAGATAAAACTACATGTTGTCTCTATCGTGCAAGACAAATGCTACAAAAAAAAAGCATTGTATACAGTTGTCCAATGATAAAATGTACTCCCTCCGTCCCATAATGTAGTGTCAAAAAACGTCTTACATTATGGGACGGAGGGAGTATATTTCAAAAATTGTAGAGCAATTAGTTCTAATGAAACATTGGCACNTTGGTCCTGATTATATATCAGATGCAGATATTCGGATTTTATTTTTGAATCTGATCTTACTTGCGGGGATGGACGTATCACGTATGGGTTCAGGTAAAACTGTTGCAACTTCTGATTGAAGAAGCTAAATTGACATGTCACAGCTCCCAGCATGTACTTCCAATAAGATGCATATCATGGTATTGGGATATATCAGCGTCTGATATATATGTGCATAAGTTGGCAGGGATATATCAGCGTCCGATATAATATATGTGCATCTGTTGGCAGAAATGTCAGATCCGCAAACTGTGATTCACCACTNGTTTTATTTTATTTTTCCTCANCATG | |||||||||
gi|49603502|gb|AJ716920.1|AJ716920 AJ716920 Triticum turgidum subsp. durum etiolated seedling 20 days Triticum turgidum subsp. d TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGGTGTTTGGCCCCTTGTGTTCCACATTTGTTGTGTTCTTGGGGCATGCTTCTAGTTTGTCCAAATGTCTCTTCAAGCATTTCAACCTGATGGTTTTCCAATCATGTTAGCTATTGCCTTGGTCATAGAGAAATTATCTTGAAACGTGTATGCAGTATATGAGTGATTTAGCTTTTGAACAGCAATTTTTAGAGCTATGTTCCCTGTCCTGGCACACTGTAGCTTAGGTTATTCCTATATAATACTCCCTCCGTCCCATAATGTAAGACATTTTTTGACATTACACTAGAGTCAAAAAACGTCTTACGTTATGGGACAGAGGGCGTAGTTAACGTATTCTCAGTTATGAAGCTGTCCACTTCTTTTCTGAAACTATTTCTCAAATGGAGTTCATCATTGTGGGGGATTTTCATGGGAGAAATGCAACGTGTCTTTGGCAATAGCAGTGATGTAAAGTTCCAAACAAC | |||||||||
gi|39729477|gb|AJ612550.1|AJ612550 AJ612550 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGGCCGATGCTTCCTGCTACTCCCTCCGTTCCAAATTACTCGTCGTAGTTCCTAGCTCAGAAGTGTGATTCGATTTTTCATTTTGGAGTTTGATGGTGTTGCTGTGACCACTATGGCAGAATTCGAATAAATTTGTTTAGTAGCAAAAAAAAAAAAAAAAAACTCGAG | |||||||||
gi|197665522|gb|FK827367.1|FK827367 KI7RS-114 KI7RS Triticum turgidum subsp. durum cDNA similar to Glutamine-rich protein, mRNA TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): ACTCCCTCCGTCCCAAAATGTAAAACTTTTTTGACACTATGATAGTATCAAAAAACGTCTTACATTTTGGGTCGGAGGAAATACTAGTTTTAAATTGCGTGTTTACAGCCACAATGACAGGACAAGTTATCTTCAAAACATATATAATCAGATAACTAGAGACAAGTTACCAGGCACCAGCCGATGCATCCTCAAGCCTTTTCTCAAGTCGAGTGCACCTGTCTTGCCTAGAGTTCAGATCAGATTGCCACCATCGACGCCGTA | |||||||||
gi|164701365|gb|FD473040.1|FD473040 P9_B11_T7_089 frumisis1 Triticum turgidum subsp. durum cDNA clone P9_B11_T7_089, mRNA sequen TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): GCCGAGGTAGGCAATCAATGATCTAGACAAGGAGCTTGAGAACCTGAAGCAAGCTTTTGAGGATGAGAAGACCCGATTCGAGGAAAGGATGAAGCAGGGCTACTAGGCCAAGGGTGTTCTGGATGCTGACGTGAAACCTTCCATGCTACTCCCTCCGTTCCAAAATAGATGACGCAACTTTATACTAACTTTGTACCTGCCCGGGC | |||||||||
gi|164699837|gb|FD468689.1|FD468689 BOT_9_2g BOT Triticum turgidum subsp. durum cDNA clone BOT_9_2g, mRNA sequence TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): ACAGGAGATTGGCCAAGTTCTATCACCCTGATGTTTATGATGGTAAGGGAACCCTTGAGGAAGGAGAGACCGCTGAAGCCCGTTTCATCAAAATCCAAGCAGCATATGAGCTGTTGATCGATGACGAAAGGAGAAAGACATACGATAAAGAGCATTTTGTGAATCCAATGAAGGCTTCTCAGGCATGGATGGAGTGGGTGATGAAAAAACGAAAAGCTTTCGATAAACGTGGAGACATGGCGGTAGCTGCTTGGGCCGAGCAACAACAACGAGAATTGACGCTTCGGGCGCGGCGTCTCTCTAGGTCGAAGGTTGACCCAGAGGAGGAAAGGAGATTACTCGCCAAGGAAAGGAAGGCTTCTATGGAGTTCTACAGCACAACTCTAAAAAGACATACCCTCGTATTACGGAAGAGGGACATCATGCGCAAGAGAGAAGAGGAAGACAAGATGAGTGAGATCAGTAGGCTTCTAGCTGCCGAGGGGCTTGAGTTAGATACAGACGAAGATGATGATGACACAACTTTCTTGAAGTAATTCTATCCAGTATTTACCCGCCAATTATATCCACCCCCCGTCCCAGAAGCCCTGGAAGGTTTCCTTGAAGTTGCTTCCATCGCACTGAAGTATATAAGGCAAGAAAATTCGGCCTTGTTGAGCATGATGAGTTGTATATTGATAACTGTTGGATCGG | |||||||||
gi|39731491|gb|AJ614564.1|AJ614564 AJ614564 Triticum turgidum subsp. durum etiolated seedling 20 day Triticum turgidum subsp. du TTTTGGGACGGAGGGAGTAT EST sequence (targeted fragment marked with yellow): GAAAGAAGAAGAGGCTGCCAAGGTCGACGGCGGAGAAGAAGAGGCGATGGCGTCCGGGTGGGGCATCAACGGGAACAAGGGGCGGTGCTACGACTTCTGGCTGGACTTCAGCTCGTGCATGAGCCGCNTGCCGCCAGCCCTCCGACTGCGGCCTCCTCCGCGAGGACTACCTCGAGTGCCTCCACCACTCCAAGGAGTTCCAACGCAGGAACAGGATCTACAAGGAGGAGCAACGTCAGATAAGAGCTGCTGCTCGCAAGGCCAAGGAGGAAGCCGAAGGAGCTCCTGCTGTTGCAGCTCACCACTAGCATCCCTTTTCAATTTTTTTCTTATGCTTTTGTTTGTTGCAAGCGCTTCCATGTTCGGCTATGAGCAAGGCAATAATTACCTAAACATTGCACCCTCCCACCTCCATGACTTGTTCTAAAAGCATGAGTTTGATAAACTACCTTGGTCATCAAGTTTGTGCATGTTTGAGATATTAAGCGATAATAAACGCTTGATTCAATCATGAAACATGATGTTTGTGCATGTCTGCATATCTTGTACTCCCTCCGTTCCAAANNAAAAAA | |||||||||