| mature miRNA: AGAATCTTGATGATGCTGCAT species: Vigna unguiculata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|182392134|gb|FF388072.1|FF388072 MOOCI84TF MOO Vigna unguiculata cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GATACGAAGGAGAGATGAAATCTGCAGCCATTAATGAAGTTGGCAATCATAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGAACTGGTCCCAAAGAAAATTGGCAGCAACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGATCAATGATGGAAACCAATGTTAATTCAGGAGTTGGTAATCCATCTTTGAAAAGACTGGTTGTGAGTGAAGATTGTCCTTCTGTATGGAATGGAATGTGTCCTAGTTTCTTTCCCAATGAGCAGGAAAAAACAGAAAGAACGAACACGGACCATTTGAAAGGAGTCCCCAATTGGGCATGGCAAACACATGCCCAGGTCAATGCTACCCCAGTACCAACGTTCTCAGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCCACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTATGAACTCCAATCCCCAAAGTCTCTGTTTTACTTCATCAAGCACACATTCATCTGAATACTATTACCAGGTTAAGCCCCCTCAGGCACCACTGTAGCGGATCTTGTTCTACACGTTAAAGCCAAACCACAAAAAGTGTTTGCGCTCAAAATTCTTTGTATAATTCAGTAACTGATTGGTGTATACTGAGATTTGATTCGACTCCTAATTGCTACCTCTTTGCTC | |||||||||
gi|182404391|gb|FF400185.1|FF400185 MOOFV45TF MOO Vigna unguiculata cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GGCCGCAGCTAGGGCATATGATCGAGCTGCAATTAAGTTCAGGGGACTTGATGCTGATATCAATTTTAATCTTGTTGATTATGAGGAGGATTTAAAACAGATGAAAAATCTTTCCAAGGAGGAGTTCGTGCACATACTCCGCCGTCACAGTACCGGTTTCTCAAGGGGGAGTTCAAAATACCGGGGAGTGACACTTCACAAATGTGGCCGGTGGGAAGCTCGGATGGGACAATTCCTTGGAAAAAAGGCTTATGACAAGGCAGCAATCAAGTGCAATGGAAGAGAGGCAGTGACTAACTTTGAGCCAAGTACGTATGAGAGCGAAATGAAACCTGAAGCTATTAATGAAGGTGGCAATCACGATCTTGATCTCAATTTGGGCATAGCAACTCCAGGACATGGTCCCAAAGAAAACATTGGCCATCTTCAATTCCAACCAGTCCCATTCAGCACGCATCCCGGAAGAATTCCAAGGATGGAGACTAATTTTAGTTCAGTTATTGGTGATCCTTCTTTGAAAAGGCATGTTGTAACTGAAGAACGTCCTTCTGTATGGAACCCCGCACATTACACCTTCTTTCCCAATATGGAAAGAGCAGAGAGAATCGGCATAGATCCTTCAAAAGGAGTCCCTAACTGGATGTGGCAAAGACATGGCCAGGTTACTGCCACCCCAGTACCGCCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCGAATGCC | |||||||||
gi|182394027|gb|FF391646.1|FF391646 MOOCX24TF MOO Vigna unguiculata cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GAGTTGGAGGAATGGAGGAACTAATCCTAAGATTCATCTTGTAAATATACTACCAAAACCATGTGATAGGAGCAACATGGAAGCCTATGCAAGAGATTGGCTCGGGGAGAGTGAAACCTTGAGACTGCTAAGCCAAACTCACCTTCAATCTCCAACGACCAAAGAAATGCATAGATATGGTCCATATAGGTCACCTGCTGAGCCTCAACTGTCTCATAATTTTGCACGTCTTCACCCACCAATTTTTCATAACATGCAGGTTCCCAGCAGCAGCAACAACGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCTGATGAACAGCAATGGCAAGCCAGGCATCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTACACCCTCCCAAAGTTGGTAGCAGAAAAATGGGTTCCACTCCCTCAATTCATGACCCTTCAAGATTATTTATACATGAGTGTAACTTTACTAATGGGGTGAAAGAAGGGATGAAAAAAAAGGGGAAACCCAAATTGGGAACTCGCTGGTTTTTGTACAATAGGTCAGTCAAAGCTAACCAACTGACGAAATCTTGAACTGACTAAAATTTTCTGATCTTATATAGCTATATGATTGCATTTCTGCTG | |||||||||
gi|182660943|gb|FF553741.1|FF553741 MOPEZ88TF MOP Vigna unguiculata cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GCATTTGACCTGAAGGGAGAATTGTATCCTATAATCTATGGAGGAGATGCACCAAGCAAAGGCTTTGATTCATCGTCATCAAGGTTTTGCTTCAGCGGTTCGTTGGACAAAAAATTAGTGGAGGGTAAAATTGTTCTGTGTGATAGCAGAAGCAAAGCGACAGGCCCTTTCGATGCCGGTTCTGTTGGGGCATTGATACAAGGTCAAAGTTTTAGAGATCTTCCTCCTTCTCTTCCATTACCAGGATCGTACCTCGAATTGAAGGATGGTGTCACTGTACTTGCCTACATTAACTCCACAAGGACTCCAACTGCAACCGTATTTAAGACTGATGTGACAGAAGATACAATAGCCCCTGTTGTCGCCTCTTTCTCTTCAAGGGGTCCAAACCCTGTTACACCTGATGTTCTCAAGCCGGATTTAGTGGCTCCTGGAGTTTCAATTTTAGCTAGTTGGTCTCCAGTTTCCCCTCCTTCTGATGTCGAAGGCGACAATAGAACATTAAATTTCAACATCATCTCCGGAACTTCAATGGCTTGTCCACATGTTTCTGGGGCAGCCGCATATGTGAAGTCATTCCACCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGCTAAACAACTTAGACCCGAGATTAACCTTTACGCAGAATTCTCATATGGGGCAC | |||||||||
gi|190415307|gb|FG809471.1|FG809471 UCRVU04_CCNI11041_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): TTTTGGCTTTTCTTTTGTTCTTGAGGTATGAATCGAGTTCATGTGGTTAGATTCCATTCGGGGTACCCAACTGGCCTCGTGTGGCAAACACAAACCGACCACTTAGAACAGGCCACATCAGCGACTCCTCGTGGCCTTGCTGCTAAAATTCCACATAAAATCTCAATTTTCCGTGTCCCCTCTTTCTTTTCTATTTTTTACCCTCTCTTGCTTTCTCTCTGTTTCATGTTGTTCACCCTTTTTTATTTATTTATTTATTTTTATTTTGTTTTCCCCATGGACAAATTTCCGTGACATTAACTGGTCTTCACTATTGGAGTAACCTATTGAGCTTTTTAGCCATACATACGTTTCACTAAAAGTGGTAATAATGCTTTATAGCTTCTAAATATATACACATGTCTATGTATGTGCATTCCTCTCTTTTTCAGAAGCTATAGTTGCATGGACAGATTCACAGTCGTTGTTTGCGGATGTAGCATCATCAAGATTCACATGCAAACGAAGGTGGATGGGACTGTGATGCAATCTAACCGCTCGTCTTTTTGATGTGAGAATCTTGATGATGCTGCATCAGCCATAAACGACTTTAAAAAGTTGAACAAGTACTGCAAGTAGAGACCCCTCAATCAAAGAGAGGGAGATAAAAAAAAAGAAAAGAAAAAGAAA | |||||||||
gi|190449132|gb|FG847850.1|FG847850 UCRVU05_CCNN15390_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GATACTTTTTACGGTGGAACAAAGATTCAGAATGGGAATCAAGTCACTTGTCTGCAGACCTGGATTGGAAAAAGATAGTGGAACCTGTCATGCAATTGTATACAGAAGCAACTGATGGTTCTAATATTGAAATTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAGTTGTTGAGTCACTTGGAAAGTGTGCTTGCTAATGAACCAGCAGTTGTTACGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAATAAGCAAGGGTTGGGTAGCTGAAGAGGTTATTCAGACCATGGTGAACGGCGGTAATCCACCAGATTTTGTACTGTGCATAGGGGATGATAGGTCTGACGAGGACATGTTTGAGACCATTTTGAGGACGGTATCACTGCCATCAGCTCCAGAGATCTTTGCCTGTACTGTAGGTAGGAAGCCTAGCAAGGCCAAGTATTTTCTTGATGATACTAGTGATGTGGTGAAGTTGCTTCAAAGCCTTGCTGCTTCATCCAATCCAAAACCCAGGCATCTTGCTCACTTTCAGGTCTCCTTTGAGAGCACAATTTGAGTTACAGACAGCATTATTGGTTCATTGTGCTACTCTTGCGAGGATTGTGAATCAATGAAATTTTTGGTTATTAA | |||||||||
gi|182645429|gb|FF540565.1|FF540565 MOPAF22TF MOP Vigna unguiculata cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GATTGTTTCAGCATACAAAAGAACTGATAAACGAGCTATATTTCTTGATTATGATGGTACTATCGTATCAAAATCTTCTATAAACAAGACCCCCAGCCCTGAAGTCATATCCGTGCTAAATGACATGTGTAATGATCCTAAAAATACACTCTTCATTGTGAGTGGAAGGTCAAGAGATTCTTTAAGTAATTGGTTTAGTTCATGCAAAATGATTGGACTTGCTGCCGAACATGGATACTTTTTAAGGTGGAACAAAGACTCTGAGTGGGAAACTAGTCACTTGTCTTCTGATCTTGATTGGAAGAAGATTGTGGAACCTGTCATGCAATTGTATACGGAGGCAACTGATGGATCTAATATTGAAACTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCGGACCCTGATTTTGGCTCTTGCCAGGCCAAAGAATTGTTAAATCATCTGGAAAGTGTCCTTGCCAATGAACCTGCAGTTGTCACCCGGGGCCAACATATTGTTGAAGTCAAGCCACAGGGGTTAAACAAGGGCCTGGTAACTGAAAAGATTCTTTCCACTATGGTTAATGGTGGTAACCCCCCAGATTTTGTTATGTGTGTGGGAGATGACATTTCCGATGAAGACATGTTTGAGAGCATATTAAGACA | |||||||||
gi|182406396|gb|FF403175.1|FF403175 MOODW79TF MOO Vigna unguiculata cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GGAATGCTCATTTATCAGTACATGGAAAATGGCAGCCTAGACACCCTTATTTTTGATGAGAAAAGAAGTAAATCTTTGGAATGGCCTCAACGGTTCCAAATAATTTGCGGAATTGCAAGGGGCCTTATGTACCTTCATCAAGATTCCCCACTGAGGATCATCCACAGAGATCTCAAAGCTAGTAACATCTTACTCGATAAAACGTTGAATCCGAAAATATCAGACTTTGGTGTGTCAAGATCTTTTGGAGTAGACCAGTTTGAGGGAAGCACAAGTAGAGTAGTAGGGACCTGGTCAGTGTGTGTTTATCCTGAACCATTTTTTCCGTCTTCACAAATATCTATTGTTCTTGATGCATGAAACAATCTCTTGCAGTGGGTATATG | |||||||||
gi|162294101|gb|FC460697.1|FC460697 UCRVU10_CCNU579_b1 Cowpea PI 418979 Mixed Tissue and Conditions cDNA Library UCRVU10-1 Vigna AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): ATGCATGATTCAGAGAAGCAATTGAGGCACGAGAAACACTATCGGTACATCAGTTCTCATGATGTGGCGTATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCATGCAAAGATCATTACACCAAAAGGTGCTGGGGAATGGGTTTGGGCCTAGGGTTTAGAGTTGTTTCTCTTTCTCCTGGTTTTAGAAAATTGTCTGTTGATCACATTGTTTCAGCATACAAAAGAACTGATAAACGAGCTATATTTCTTGATTATGATGGTACTATCGTATCAAAATCTTCTATAAACAAGACCCCCAGCCCTGAAGTCATATCCGTGCTAAATGACATGTGTAATGATCCTAAAAATACACTCTTCATTGTGAGTGGAAGGTCAAGAGATTCTTTAAGTAATTGGTTTAGTTCATGCAAAATGATTGGACTTGCTGCCGAACATGGATACTTTTTAAGGTGGAACAAAGACTCTGAGTGGGAAACCAGTCACTTGTCTTCTGATCTTGATTGGAAGAAGATTGTGGAACCTGTCATGCAATTGTATACGGAGGCAACTGATGGATCTAATATTGAAACTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCGGACCCTGATTTTGGCTCTTGCCAGCCAAAGAATTGTTAAATCATCTGGAAAGTGTCCTTGCCAATGAACCTGCAGTTGTCACCCGGGGCCAACATATTGTTGAAGTCAAGCCACAGGGGTTAAACAAGGCCTGGTAACTGAAAGATTCTTTCCACTATGGTTAATGGTGGTACCCCCAGATTTGTTATGTGTGTGGGAGATGA | |||||||||
gi|182652950|gb|FF547727.1|FF547727 MOPDK20TF MOP Vigna unguiculata cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GAGTGCAACATACAGAAGTGCATTAGCTCTTCATAAAGGTGGTCAAGGAGAACCAAGTATGGGACCATTTATTGGCAAGACATTTTATCCCAAGTCTTCCATCAAGTATGATGAAGGAAAAGTGGAGACAAGTTTTAGACCTTTTTCCTCTAAGGAGCAAATAATTGCAAATTCCAGTATAGCAGGCACTTGCCATAATCTTGATTTGAGCCTGGGGATTTCTCCATCTTCTAAAAAGTTGAAGAATTGTGATTATGGTGGAGAGTATTCCTTTGGATGTATGGCTTGTAAGATACCCCAGGAAATAGGATCAATGGAGAAGAGCATGGTGGAGAGAATAAGAAGTGTTCCTCTGCAAAAAATTTCGAACTTGGGTTCACATCTTTGCAGCAGCAATGGCAACATAGGGTCAAGGGCTTTGCAATCAAATGCAGCATCATCAGGATTCGTGTCTTCTTCTTCTGGCTGTATCATCAGCCACACTTCCAATCACCACACATATTAATTGTGCCAACAATTGGCACTGCAGAATCATCATTAACTCCCCAACCTTGTGGGGGTCACAGTAGATGAAATGAAACCATAAACAAATCATATATATTACTATCTGCTTCTTTCTGGAAGATTTGATGAGACAGAATTAATACATCATAACCACATCTATCCACACCATGTAATATTCTATTCATTTCCTCATTATGATTGTATTTAATAATGTTGCCAAGCATTGATTGCAATGCAAAACCAGTAACTTCTGTATTCATTATTGTGATTTAGTACTCTCTGTTGCCTTCTGTGAGAGAGCATGTTCTAGTGAGAGACCTTTCTTCACTATGTAATATTGTTTATAAATGCAC | |||||||||
gi|190501430|gb|FG893070.1|FG893070 UCRVU08_CCNS12614_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CAATGTCTGATGAACAGCAATGGCAAGCCGGGCATCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTACACCCTCCCTAAGTTGGTAGCAGAAAAATGGGTTCCACTCCCTCAATTCATGACCCTTCAAGATTATTTATACATGAGTGTAACTTTACTAATGGGGTGAAAGAAGGGATGAAAAAAAAGGGGAAACCCAAATTGGGAACTCGCTGGTTTTTGTACAATAGGTCAGTCAAAGCTAACCAACTGACGAAATCTTGAACTGACTAAAATTTTCTGATCTTATATAGCTATATGATTGCAAAAAAAAAAAAAAAAA | |||||||||
gi|190524349|gb|FG911620.1|FG911620 UCRVU08_CCNS7889_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CGATGTTTAACAGAAAAGACCCAAACTATATATCAGGAACCACAGTGTAGACAGACACAGCAAAGTGATGGAAGTGACAAGTGCTATTCATTCTGTTGGCTTTCTGCATTTACAGACACACCGAGAATTCTTCTTCTCTACAAGACCAAGGAAAGTGAAGGTTCTTCTTCCTTGCCATCACCATCACCATCCAATCTACTCAAGTAATGCTTTTGATCGTAGTGACAGAAGCAGTGTCATAATAAACTCCACCTCTGGTACTTCCACAGCAACTTCTGCTGCTGAGGGGTCCCTCTCTGAGGTGGAAAACATAAAGCAGAGGTGTCGTACATGGCAGTGGAAGGGTCAATATTCAATCAACTACTTTGTTTCTTCGGACTCTCCTCCGCAGTTGCAAGCCAACCACCCTCCCCTCTTACTTGTTCATGGCTTTGGTGCCTCCATTCCTCACTGGCGCAGGAACATCAAGATTCTAGCCCAGAATTATACTGTGTATGCTATTGATCTTCTCGGGTTTGGAGCTTCAGATAAGCCTCCAGGCTTTCAATATACCATGGAAACTTGGGCTCAGTTGATCTTGGATTTCTTGAATGAAGTTATTCAGAAGCCAACAGTACTGATAGGAAACTCTGTTGGAAGTCTCGCCTGTCTCATTGCTGCCTCAGGTATGTTTGATTTATCCCCCAGAGGCTGGATATCTAACCT | |||||||||