| mature miRNA: CAGCCAAGGATGACTTGCCGG species: Vigna unguiculata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|162294843|gb|FC461142.1|FC461142 UCRVU11_CCNW474_b1 Cowpea UCR 41 Mixed Tissue and Conditions cDNA Library UCRVU11-1 Vigna un CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CTGTTGGTGAACAATTTCATTCCGGGGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAGGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTTGTAGACATGATAGATGGTGGGCGTGGAATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGAAACTGCTGCAACCTTAAAGTCTGACAGAAAAAGAAAGAAGGGTGGGTTTGGTTCAGTGCTGCATCAAACCCATCCTTCATGAGACCAGATGAAGAAGCTTTGTTTCAGTTGGGTGTGTTGACTGTGACAAGTTTCGTTGTGTAGGATCGTCCTAACATCTGGTCTAGGCAATCCATCCTTGGCTCATATACTTTGGCAATCCATCCTTGGCTCATTTAGGCAACTCATCCTTGGCTCAATGTACCTGTACTAATTTGTCTTTGTGCATGGGAGTAGAGTGTCTTTGGCATGCTACAAACTAAAGACTTCATACCCTGATGGAGAAGACAACTGTGTGTCTTTGTGTGAAAATAAAACCATGAACTCTAGTTATGTGTGTTTCTGCCAAGTCTAAACTTGGTTTTGTACTTTGTATTTTGTATTTAGGAACTATGTATTTGCAGAACTTTGACCTGTGGTCTTTGTTAAAACAAGGCACTGGTGTTGTGATAAAAAAAAAAAAAAAAGGGCGGCCGC | |||||||||
gi|182396451|gb|FF396327.1|FF396327 MOOET05TR MOO Vigna unguiculata cDNA 3', mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): AAACATAATAAAAATTGAAAAGTCGTAGTTTGAGGATCTGCAACTGGATCCATCGATAAATGAACTGTATTTGCAGGAGTCCTCAAAGCATCACAGCAGAAGAAGAGAGCAAAATGTAGCCAAGAACAACTTGCCGGCCGACGAAAAAAACGACGACGAAGAGAGAGTAAACACATAACTGCCGGCAAGTCATCCTTGGATGCACTCTACTTTCTGCCTCTTGTTGTGAGTTGAGAGAACCTAAAGCTACCTTCATCAATGGTGGTTCATGTGGCTCTATATATAGCAGAACAGAAACATATTTTATTGGACTCATAGCTGCATCTATCTGAGATCACTCTGAGTCCCC | |||||||||
gi|190417977|gb|FG816926.1|FG816926 UCRVU04_CCNI3848_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna u CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CGAAATGGCAGTGGCTCTTACAATCATCACGGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAGCAACTAAACCACAATTGATGGGGGGGATTTAGAGGCCGAGGTTGGTTTGTATCCTAGAGACATATTGGTGAAGAATACCTTGGTTATCTGTAAACATTCTTGGCAATATATGTGCCAAGCGGCAAATCATTCTTGGCTTGTTCTTGTGTTTGTGGTGTGAATGATATTATGGGGAGCGAAAAGAATGATTGATTATTGATATTTGTGATTTCTGTTGAAAAAAAAAAAAAAAAA | |||||||||
gi|190483815|gb|FG879364.1|FG879364 UCRVU07_CCNP12984_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vig CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): ACAACGGGGAACCATCTCCTCTGAGCAAAGCTCACAGAGGCGTCTTGCTATTCACTAAATCACTGCTTCGGTTGATGGTGAGGTTGGTGTATAATTGAGGGAAGTAGTTCTTTGAGTCGAAACCATAAACATTGGCAATTTGCATGCCGTGCGGCAAATCATTCTTGGCTGTGTTTATGCTGGTCATCATACGAGGAGAAGAATGATTGATTGGGCCCATGATGTTTGTCTTGTTGAAGTCAACCAATCCTTCGTTATATTCTCTATTGTTTTTTTTTCTTTTTTTGTACAAACAATGTTAAGCAGGTAGGAAAGTCAAGCCTACGGATTAGAAGACATTATGGAACAAACTGTTTCTTTAGATTCACTTTATGCTGGCTTTATTCCATGTTAAAAAGAAAAAAAAAAAAAAAAA | |||||||||
gi|190412195|gb|FG811944.1|FG811944 UCRVU04_CCNI12372_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GACAATACCGGGCAAAACTTGAAGCACAAAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATTTACATGCATTGAAGAGAGCTAGAGGTTCTGGTGGACGCTTCTTGAATACCAAGAAGCATGAAGAGTCTAAACCCTCTTCACAGAACCATGGCTTAGATGTTTCAAGCTGTACTCATTTGAAACTGAGGGGAAACATGTCAGAATCTAAGGCTCGTTTGAACTACAGAGATGGTGCTTTCACAACCACATGTTCAGATTTTACTACTGCATCCAATAGTGGTGATCTCTTCCAGCAACATCAACCAGACTTTAGATTATGTGGTTACCCTTCTCATCTCGGAAGGAACATGCAGGGTTACTCTGCTGATATCAGTGGTGGTCGTGGTGGTGGAAACCAGCATCGTCTATCAGTCCTTATGTGATACACCAGCAAGTTATTTTTCTGCATTCAGTTGGAGAAAACAGTTGCCTGTGTTCCATAGGGAAGTCATCCTTGGCTCATATATTACTATGTCTATTGGTTGTCCTAGAACATGGCTTTGATTGAACCTTTGCTAGATTTCAATTATCATATATTGTTGCCCTTGAAATGTTTGGGCAGAGAAGCACATTTAACTGACTAGTCACAACAACGATGTTTCTTTGTGTTGAAAAAAAAAAAAAAAAA | |||||||||