| mature miRNA: GAGCTTTCTTCAGTCCACTCA species: Vigna unguiculata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|190507694|gb|FG896143.1|FG896143 UCRVU08_CCNS14223_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 GAGCTTTCTTCAGTCCACTCA EST sequence (targeted fragment marked with yellow): TTTTTTCTTTTTTTTTTTTAAAATCTTCACACAACCCTTAGGCTGCCATCTTCTTAACAAATCACATACATAAACAAACACATACCAAGCCATTAAGGAATTTAGATTACCGTTCACTAAGATGAAGAAGATCAAAAGGGGATTTCAGAGAAGCAGAAGCTAGCGGCGGTGAAGAAATGGAAGATGAAGCACCTAATCCTAGAGATCCGGCACCACCACCACCACCACCGCCGCAATTAGCACTACTTGGTGTGGGTAGTTCCACAGGCTTTCTTGAACGGTTTCTTCCACGATGCATGTGGCGCTCGCAGTACTTTTGCCCAGCCACCACGTCCCTCGAGCACCGCCACTTTTTGCCGTCAGTTCTCCGGCACCGCCCTGGTTCTGGATCCATCGCTCCCCTACCCCAATACCCAGATTGCAGCAAAGCAGGTTGGTAATGTTGGAGAGGGTGATGGAGGAAATAGTGAGGGGAATGAAGAAGGCTTTTCTTGATTGGTTGAAGGAGTTCAGGAGGAACAGCAGCACCAGCTAACATGTACCTGAAGATCAAAGCCTGCAACTCAAGCTCCTGCCACTGAGACAAGCTGAAGTAGCTCCCCATCCTGGGAAATCTGTTAGTAGCTGCTAATGTTGAATCTGACAGGTTGCTGACTTTGCTGTTGGGTTCAGGTACAAA | |||||||||
gi|182406416|gb|FF402397.1|FF402397 MOOEY90TF MOO Vigna unguiculata cDNA 5', mRNA sequence GAGCTTTCTTCAGTCCACTCA EST sequence (targeted fragment marked with yellow): GGAGCGCAGGAATCAATAAAACCACCCCAGAATTAGGGTTTCTGCCACCCATGCTTTTCAGTTTTAGCTCTAAGGAAAAAAAGATGTACATGTACTGCAGAGTTCCATTACAGCTTAGTCACATTGGGAAGGAAAGAGAGTGAAGGAGCTTCCCTCAGCCCATTCATGGACACAGAATAAGATTGGGTTGCAAAATTAACCACTAATTGATTCACACAATAGTATTGAGTTAGGGTGATGCTGTTTTTGCTGTGATATGATTGTGTGAATGAAGTGGTGCATATATATTGTGACCCTCTTTCTCTGTGCTTGGACTGAAGGGAGCTCCTTCTTTCTGTTGCCTCCTTTTGTATCCATCTCTGAGATGGCTTTATGCATGTCTAAGCTTAATCTATATATACTCAGCACAAAAAAGGTGAGACCAGTACACTGTAGCTGATGTTACATATCATCTTCTGGATCTTTTGAGTGTGAAGAAAGGAGAATATTAGTATGGAGTGAGAAGAAAAAGCATTGAAGGTGTGCATTACTCATTTCAATGCACCAATTATTCCATCTCTTTCATTTTCCAAGGTGTGAGTAAAGAAATGCTGCTATAGTCCACGTTGGGATGTTCCTTCTGGCTTTAACACAGAGCAAAATGCATTAGTTAAATATTGATTCTCCTCTACACTCAGAGAAGTGCACCTGCAAATTTTCATTAAACATATTGAATGGCATTAACTATAAACAGTAATCTGTTATGTCTTTTTTTGCCTAGAACAGATAGTTTACCCTATAATAATGAGATTTAGTGTAAATGTGGCTTTGAAATTAGTGATAAATACTTCTGACATGTATGCAGCATAAAGCTGAAACTAATTCTGGT | |||||||||
gi|190505874|gb|FG895704.1|FG895704 UCRVU08_CCNS13997_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 GAGCTTTCTTCAGTCCACTCA EST sequence (targeted fragment marked with yellow): ACAGGGTGTGCCATCGGAACTGAATTTGCGCGCACGTGTTGAACGCGAAAACAGTCTTCTCCGTCAAATCAATATAACATTGATAGACGGTGTGTTCCATTAAACAACTCTTTCATTTTGATTCTCGTCTTCCTTTTATCACTCACTCATTCTTCCCAGCGTTACCTGCTTCAATGGAAGGTTTGGCTTCTCTCAAGGCTCCCTTTCAGGCCACCCCATTCCTCTCTTCAAGACCCAAAACCTGGGATCTTCCGACCCAACTCATTTTTTATAAAAGAAACTCCTTTTCAACATTTTCAGTTCGGGCCCAGGTGGAGTCTACTGATGGTTCCGCTGCAGTATCCTCATCTGGTGAATCCGTGACAGACGCTCTCAAGATTAAGGAGTGGGAGGTAGGAATGTTGCAAAATGAGGTTGCATCTAGCCAGGGCATAAGAATAAGGAGAAGGCCACCATCTGGACCTCCTTTGCATTATGTAGGACCCTTTCAATTCAGGTTGCAGAATGAGGGCAATACACCCCGGAACATTTTGGAAGAGATTGTGTGGAACAAGGACAAAGAAGTCTCACAACTTAAAGAAAGAAAGCCCCTCAGTGTGCTGAAGAAAGCTCTCGAAAATGCACCTCCTGCTAGGGATTTTATTGGTGCTCTAAGGGCAGCGAATGATCGAACTGGACTGCCGGGGTTGATTGCTG | |||||||||
gi|190494180|gb|FG883702.1|FG883702 UCRVU07_CCNP15507_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vig GAGCTTTCTTCAGTCCACTCA EST sequence (targeted fragment marked with yellow): GTAAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCTTAGAGCCTTTACTTGAGATTTAGTAAAGCGCACTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGAAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGCCTTTCAGAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGAGATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTAGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAAAAAAA | |||||||||