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mature miRNA: GGCAAGTTGTTCTTGGCTACA
species: Vigna unguiculata
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|190444181|gb|FG840389.1|FG840389 UCRVU05_CCNN3951_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 V 

GGCAAGTTGTTCTTGGCTACA
||||||.||||||| ||||
CCGTTCGACAAGAAACGATAG

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTCTCCATAATAATTGTCATTCATTTCTAAATTGCTCCGTCCCCTTCTGGAGATAGAGAAGGAACAATCAACAGATGAGAGGACATGTAAAGGAACAAAAAACACAGCACCTTGTTCGCTTTCAATAAATATTCGCATAAACAATTTATATTTTGTGGGAAAAAAATATAATGCATACACCTCAACATTACTACTATTCTTGTAAGGACATGTGGATAAATAAACAATAGAAATACGAATGCTACAGAGAGGGTACATTCCCATCAATTTCAGGGGCTCAATCCTCCAAACAACTTTGATAGGCTGAAAATTCTTGCTATATACACGACAGCAACCTTGAGTGTCTCCAGACAAGAGGGAATACCAACAGAAAATGAATGTTTGTAAGGAACTAACAGTTGATGCCACATTGACCATTGGTTAATCTGTTGGAGTCTGAGGTGAAGGGATCAATCCTCACCCAAAGCAAGGAGAATATTGAAGCAAGAAGAACTGACCAGACAATAACAATGGTTGGGGTACGATTTTGCCTGCCCAAGAGACCCTTCAAGAATGGGTATAAATGGGCAATGACCCAGATAGCAAAGAACAGCTTGCCAAAATAGTGGACCCCAAGACTGGTAACCACTGTTTATGGCATAGGACACACCGGCCACAATCCCTACCAAATTCACAA


gi|190505102|gb|FG891929.1|FG891929 UCRVU08_CCNS1201_g1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 

GGCAAGTTGTTCTTGGCTACA
||||||.||||||| ||||
CCGTTCGACAAGAAACGATAG

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTGAACAAAAAACACAGCACCTTGTTCGCTTTCAATAAATATTCGCATAAACAATTTATATTTTGTGGGAAAAAAATATAATGCATACACCTCAACATTACTACTATTCTTGTAAGGACATGTGGATAAATAAACAATAGAAATACGAATGCTACAGAGAGGGTACATTCCCATCAATTTCAGGGGCTCAATCCTCCAAACAACTTTGATAGGCTGAAAATTCTTGCTATATACACGACAGCAACCTTGAGTGTCTCCAGACAAGAGGGAATACCAACAGAAAATGAATGTTTGTAAGGAACTAACAGTTGATGCCACATTGACCATTGGTTAATCTGTTGGAGTCTGAGGTGAAGGGATCAATCCTCACCCAAAGCAAGGAGAATATTGAAGCAAGAAGAACTGACCAGACAATAACAATGGTTGGGGTACGATTTTGCCTGCCCAAGAGACCCTTCAAGAATGGGTATAAATGGGCAATGACCCAGATAGCAAAGAACAGCTTGCCAAATAGTGGACCCCAAGACTGGTAACCACTGTTTATGGCATAGGACACACCGGCCACAATCCCTACCAAATTCACAATAAGCACCGTTGTAGGAGGGATGAGAAGTGATGTCCATTTAAACACATAAAGCTCTGCAAAATCCCCATCCTCGTCCGATGCCTTTGAAGTAAC


gi|182396451|gb|FF396327.1|FF396327 MOOET05TR MOO Vigna unguiculata cDNA 3', mRNA sequence 

GGCAAGTTGTTCTTGGCTACA
|||||||||||||||||||||
CCGTTCAACAAGAACCGATGT

EST sequence (targeted fragment marked with yellow):
AAACATAATAAAAATTGAAAAGTCGTAGTTTGAGGATCTGCAACTGGATCCATCGATAAATGAACTGTATTTGCAGGAGTCCTCAAAGCATCACAGCAGAAGAAGAGAGCAAAATGTAGCCAAGAACAACTTGCCGGCCGACGAAAAAAACGACGACGAAGAGAGAGTAAACACATAACTGCCGGCAAGTCATCCTTGGATGCACTCTACTTTCTGCCTCTTGTTGTGAGTTGAGAGAACCTAAAGCTACCTTCATCAATGGTGGTTCATGTGGCTCTATATATAGCAGAACAGAAACATATTTTATTGGACTCATAGCTGCATCTATCTGAGATCACTCTGAGTCCCC