| mature miRNA: GTATAGCATCATGAGCAATCA species: Vigna unguiculata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|190458077|gb|FG855420.1|FG855420 UCRVU05_CCNN20095_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATAATAATAATGGTCATGGATCAGTTCAATTAATGCTGCTAAAAAAGTAGCATATTCAAATGATTAATCATACAAATATTGCATATACATCGAAACATAGAGCATTAGTACGTGCCACCATCTTAATTAAGCTAATTAACGAAAATAAAGAAAACTAAGCTTGATTTTCCATGAATTATGAAGTCTTCTAATAATTAAGGGCTAGCAAATACTATTGTGAGAGCTAGCTAGCACACATTTTATTCAGGAATGAAGTATAGCATCATGAGCAATCAGCCTTAGATTTTTTTTTTAGCAGATTGACTGCTCATGATGTTATATCATTTCCATGAATTTACCTCTTTGCATGCTACCATATATTTTTATATATGTATATGCTGCCCTAATTGTAAACTTGTCCTAACGAAAGCCCCCTCCGAGGGCAGGTGCCCAATAGTCTGCTCCATTGTCACTCCCAACTTGCAGTGTGCATGACACTGGAACCAGACACAACCCTCTACTCCTCAGCCCCTTCTTTTGTTCTTCTTCAGTTTCCGGTTCTCCAGCTGCTTTCCTTTTCAAGCTGTTCTCATTATTCAGCAGCTGACCAGGGTCTTCAGG | |||||||||
gi|190455575|gb|FG854899.1|FG854899 UCRVU05_CCNN19423_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTATTGCAAACTTTTCTGAAATCATATATGAATTGCTAAACTGAAATATAATATAATTATTTATTCATATATGATGAACATGAACTTATTAAATTGATCTACGCTGAGGTTCCTCTGTGCCTTCTCTACCTGTTACGAGGCTCTTAATTTTTCATGTTGCTATACATGGTTTGCACTTCTACGCTTCACAATAATAGGATACCTCTTCTGCGTCCTAGTTGTTGGGAAAAACACCAACTTGTCTTCCTCAGCAGGAACCCAACTGAAGCGGGTGACAATGCGGTGAAGGAAGACAGAAAGTACAACTCTGGCTAGCTCATAACCAGGGCACAACCGTGGCCCTCCCCCAAAAGGTGTATAAACATTCGCAGGGTTTGATGCTTCCGATGAGTTACTCTGCCATCTCCAGGGATTGAAGGTGCGTGCATCTTTGTAATATTCAGGATTCAGATGTACAGCACGAAATGATGCGAAGACCTTCCATCCCTTAGGAATAGTGTAACCTTTTATGTCTATGTCTGTCGTTGCTCTTCTAAATATCCCACCAATTATATTTGCCACCCTCAAGGTCTCATTCACAACACACTGGGTAAGAACCATTGACTTGTAATCTGTCCATTCCAGTGGTGCCGCTGGGTCACTCCTTGCTCTGATTTGGTCATGCTCTTCCTT | |||||||||
gi|190549595|gb|FG930275.1|FG930275 UCRVU09_CCNT10633_b1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vig GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTAAATTTAGGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATAATGAGAACAGCTTGAAAAGGAAAGCAGCTGGAGAACCGGTAAATGTTCTTACTAAAATAGAATTTGGAATCTCCGTTGAATTTTTTTTTCTATTGATTATTTTGCTGTGTCTTCAAAATACATTAATAATCACTGATTTTGAAGTTTTAAAATATATTAAAAGAAAATTTTAATATTAATATCAACGTAATGTATTTTTAATACTCAGCAGAGGACAGTCCAGAAAATCCGGACACAAATAACACGATTACGTTGATGACATGTTTTAATTATTCTAAACACATTTGTGGTGTGCAATGGCTAATTAGGAAACTGAAGAAGAACAAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACACTGCAAGTTGGGAGTGACAATGGAGCAGACTATTGGGCACCTGCCCTCGGAGGGGGCTTTCGTTAGGACAAGTTTACAATTAGGGCAGCATATACATATATAAAAATATATGGTAGCATGCAAAGAGGTAAATTCATGGAAATGATATAACATCATGAGCAGTCAATCTGCTAAAAAAAAATCTAAGGCTGATTGCTCATGATGCTATACTTCATTCCTGAATAAAAATGTGTGCTAGCTAGCTCTCACAATAGTATTTGCTAGCCCTTAATTA | |||||||||
gi|182645210|gb|FF538820.1|FF538820 MOPAI32TF MOP Vigna unguiculata cDNA 5', mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GTACAGCCCTTCATCAACTAGGTTTCCCCGTTTGGAAAGACTGACACGGCTTCTGTCTTATTAGAAGCTATCGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGTAATGGATCAGGAAACATGAGGCAGCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAACGAAAACTGTTTGAAGAGGAAAGCAACAACTAGTGAGCAGGAATCTGAAGAAGAGGCGAAGAAGGACTTAAGGAGTAGAGGTTTGTGTCTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCTCCAGCTTTTGGAGGAGGATTTCGGTAGACGAAGCTAATTTATTGTTGGGTTAAGTAGCATAAATTAATATATATATATATGTTGCAGCACAGAGAGAAACCAATTCATGGAGGTTGTATAACATCATTAGCAGTCAATCCGCTGCAAAACCTAAGGCTGATTGCTCATGATGCTATACAACATTCCTGAATAAAATTTGTGCTGTGAATCGAGTAGTATATATTTGCAACTCCTTGTTAAGACTCTAAATTCATAAAAATCGACCTTTTGTTTATTCAACCAGCTTAATT | |||||||||
gi|182386602|gb|FF383660.1|FF383660 MOOBA43TF MOO Vigna unguiculata cDNA 5', mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GTTGTGTCTGGTTCCAGTGTCATGCACACTGCAAGTTGGGAGTGACAATGGAGCAGACTATTGGGCACCTGCCCTCGGAGGGGGCTTTCGTTAGGACAAGTTTACAATTAGGGCAGCATATACATATATAAAAATATATGGTAGCATGCAAAGAGGTAAATTCATGGAAATGATATAACATCATGAGCAGTCAATCTGCTAAAAAAAAATCTAAGGCTGATTGCTCATGATGCTATACTTCATTCCTGAATAAAATGTGTGCTAGCTAGCTCTCACAATAGTATTTGCTAGCCCTTAATTATTAGAAGACTTCATAATTCATGGAAAATCAAGCTTAATTTTCTTTATTTTCGTTAATTAGCTTAATTAAGATGGTGG | |||||||||
gi|182405553|gb|FF402934.1|FF402934 MOODZ10TF MOO Vigna unguiculata cDNA 5', mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGAGCGGTGGACCAGGGAGTGGGAGGCAGCAGAATTCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCTGGTCAGCTGCTGAATAATGAGAACAGCTTGAAAAGGAAAGCAGCTGGAGAACCGGAAACTGAAGAAGAACAAAAGGAGGGGCTGAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACACTGCAAGTTGGGAGTGACAATGGAGCAGACTATTGGGCACCTGCCCTCGGAGGGGGCTTTCGTTAGGACAAGTTTACAATTAGGGCAGCATATACATATATAAAAATATATGGTAGCATGCAAAGAGGTAAATTCATGGAAATGATATAACATCATGAGCAGTCAATCTGCTAAAAAAAAAATCTAAGGCTGATTGCTCATGATGCTATACTTCATTCCTGAATAAAATGTGTGCTAGCTAGCTCTCACAATAGTATTTGCTAGCCCTTAATTATTAGAAGACTTCATAATTCATGGAAAATCAAGCTTAGTTTTCTTTATTTTCGTTAATTAGCTTAATTAAGATGGTGGCACGTACTAATGCTCTATGTTTCGATGTATATGCAATATTTGTATGATTAATCATTTGAATATGCTACTTTTTTAGCAGCATTAATTG | |||||||||
gi|190539257|gb|FG928527.1|FG928527 UCRVU09_CCNT8905_b1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vign GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTGTGTCTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCACCAGCTTTTGGAGGAGGATTTCGGTAGATGAAGCTAATTTATTATTGGGTTAAGTAGCATAAATTAATATATATATGTTGCAGCACTGAGAGAAACCAATTCATGGAGATTGTATAACATCATTAGCAGTCAATCTGCTGCAAAACCTAAGGCTGATTGCTCATGATGCTATACAACATTCCTGAATAAAATTTGTGCTGTGAATCGAGTAGTATATATATTTGCAACTCCTTGTTAAGACTCTAAATTCATAAAAATCGACCTTTTGTTTAAAAAAAAAAAAAAAA | |||||||||
gi|190549596|gb|FG930276.1|FG930276 UCRVU09_CCNT10633_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vig GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTAGTTCAATTAATGCTGCTAAAAAAGTAGCATATTCAAATGATTAATCATACAAATATTGCATATACATCGAAACATAGAGCATTAGTACGTGCCACCATCTTAATTAAGCTAATTAACGAAAATAAAGAAAACTAAGCTTGATTTTCCATGAATTATGAAGTCTTCTAATAATTAAGGGCTAGCAAATACTATTGTGAGAGCTAGCTAGCACACATTTTATTCAGGAATGAAGTATAGCATCATGAGCAATCAGCCTTAGATTTTTTTTTAGCAGATTGACTGCTCATGATGTTATATCATTTCCATGAATTTACCTCTTTGCATGCTACCATATATTTTTATATATGTATATGCTGCCCTAATTGTAAACTTGTCCTAACGAAAGCCCCCTCCGAGGGCAGGTGCCCAATAGTCTGCTCCATTGTCACTCCCAACTTGCAGTGTGCATGACACTGGAACCAGACACAACCCTCTACTCCTCAGCCCCTTCTTTTGTTCTTCTTCAGTTTCCTAATTAGCCATTGCACACCACAAATGTGTTTAGAATAATTAAAACATGTCATCAACGTAATCGTGTTATTTGTGTCCGGATTTTCTGGACTGTCCTCTGCTGAGTATTAAAAATACATTACGTTGATATTAATATTAAAATTTTCTTTTAATATATTTTAAAACTTCAAAATCAGTGATTATTAATGTATTTTGAAGACACAGCAAAATAATC | |||||||||
gi|190539284|gb|FG928528.1|FG928528 UCRVU09_CCNT8905_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vign GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTAAACAAAAGGTCGATTTTTATGAATTTAGAGTCTTAACAAGGAGTTGCAAATATATATACTACTCGATTCACAGCACAAATTTTATTCAGGAATGTTGTATAGCATCATGAGCAATCAGCCTTAGGTTTTGCAGCAGATTGACTGCTAATGATGTTATACAATCTCCATGAATTGGTTTCTCTCAGTGCTGCAACATATATATATTAATTTATGCTACTTAACCCAATAATAAATTAGCTTCATCTACCGAAATCCTCCTCCAAAAGCTGGTGCCCAATAATCAGCTCCATTGTCACTTCCAACTTGCAGCGTGCATGACACTGGAACCAGACACAAACCTCTACTCCTTAAGTCCTTCTTCG | |||||||||