| mature miRNA: TGACAGAAGAGAGTGAGCACA species: Vigna unguiculata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|190421296|gb|FG818049.1|FG818049 UCRVU04_CCNI4498_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna u TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): AATAGTTGATTTCATCAAAGCGTCTGAATAGGATCATCCCATGATTTTCTCCTTCCTTCGCACATTCGCTTTTCTTATGTAATTGTATTCCTTCTTTTTACACTCTCTCATCTTCAATTTCTAGGGTTTCGTCTTCTTCTTCTTCTTCACCGTAAACCCTTCTCCATCTCACACCACTGTGCAGCTAACCATGGAAAACTTCACCTGTTCTCCCTCTCCTCTGTCAGCCATTCCATCCATTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTTTGAAGACTCCTGCAGTATATGCCTAGAGTCCTTCACCATTCACGAACCATCCACTGTTACTAATTGCAAACATGAATATCATCTGCATTGCATTCTTGAGTGGTCACAAAGAAGCCAAGAGTGCCCAATTTGTTGGCAATCCCTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTTGAAGTTGAAAAACGCTTGAGATCAAGAAAGATGACTACTTTTCGTACCCGCCTTGAACAGTATGCCTATGAGGATGACTTTTTCTCAGACGACTCTGATTCTGATGACCAGATTATGAGGCGCCTAGTTGCTGCTGCAAATAGATCTCGTCTTGTTCAGAGACAGGAAAGGAATAGATCACCTGGTGCTGGTCCATCAGATGTTCTTGATATTAACTCTTCCATACATGTATCTGGGGTGCAAACAATTTCACCATCTTCGGGTCCTGCCTCT | |||||||||
gi|190515614|gb|FG907343.1|FG907343 UCRVU08_CCNS5095_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): CTTTTTCTTGGGACAACTTCTCCAACCGGTTATAAAGAAGGGAAACAATTGGCCTTCATGCAAGGTGACCACTCTCTGAACAACCAAAGCCCACATCTCGCGGGTGGTTCCGTGAGCCAGGCCCAGATGTTTCTGCGGACCGGCCCGTATTCTGAAAGCAGTGGGCTGAGGTGTAAAATGTTGTGCGATAGCCTAACAAGCTCGGTCCACGACTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCAAATGGTGAACCCGCATTCGCCCCTTATGCAGCCATTGGGCCTCAGCCTGCATGATGGTAACAGCTTGGGGCCCGTGGACCCCGTTTTGGGCCTTAATGGGAGTGACCATTCTTCGTCGATGTATAACATAGGTTCTAATGGATCGCAGGGGAACGAAGCCCATCCGCTGTTTCCCTTTCAATGGGGATAGAATCGAATGGACCACTCTTTTATTTGAAGGATTCTTTCTCTCGCACTATTTAAATTCTGAATTTATCTTTCATGAAGCCATGAACTACCTATTGTCACGTTATCAAAATTATGGTCTCAATTTTTTTCAAAAAAAAAAAAAAA | |||||||||
gi|190416464|gb|FG808496.1|FG808496 UCRVU04_CCNI1047_g5 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna u TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAAAAAGCTTATTTTTTTCATAAGAAAAATGTATATTACATAAAAACTACCATTTCACTGCACAAGATTGCAGCAGAAAGGCATTCACACAACTACAAAAGCAAATATCTCCAAAACAATTGTGAAGCAAAAATGCAACCATGTGAGAAAATAGTGAGAACCCCTGCATAATTTTCTCAACCTACCCTTTTAACATTCTTTCCATTGATTTGAGTCATTGCCTCGTCTTGAAGCCATAGTTATAAGTTATGTAACTTTTCTCATTATGCAGTCATAAAATCTCAGTAGCAGTGTTGGAGAAAATTTCAGCTTCATTTAAACATGTACAAAGAAGATTCCAGAATCAGGAGATTGTGTGTCATTCATTCGCCAGCATCTTAAAATTCTTCCATGCTGTTGTTGAATAATAATACTGAAACAGATAACAAACCATGTAACTAAACTGTTAGACATTTTTGGTCATGAGCTGCATCAGAATGAGAGAGAGAGAGTGAAGAAGATGATGTGGTTTGGTTTTGGTTGATGGAGAAGGAGAGTCGGAGAATTTTCTGGCACTGAAAACCGACAGAAAGAGTAGTGAGCACACAAAAGCAGTGATATAGAGTTATATCATGTGCCTCTTTGTGCTCACTCTCTTCTGTCAATTTCTGTCCAAATAGAAGGAATTAAAAGAAACTAAGTACACATACA | |||||||||
gi|182392286|gb|FF392949.1|FF392949 MOODL59TF MOO Vigna unguiculata cDNA 5', mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): GAAGATATGTCAACTGAATTGCACATTTACACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCCCTGCCTCGGAATCCTGAGGTAGTATATGCAATAATGCACAGGCAGGAAGTCTTTCTGCCATTCAAGAATCATCCACGCTTCAATGAACTGATTGATAACATTTATACTGTATTAGATTTTTTCAATAGTCATATGGATGCTCAAAGAGAGAACGGTGACTGGTCTGTCAATGAAGTGCTTCAAGTCATAACTGTCAATTGTCGTTCTTGGAGGGGTGATGGAATGAAGATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATTCCGTATGTCTGGCAGCTAGTGCTATCCCATTGTGGATTCTCATTCAATACAGGAGCCATAAATTTGTTTCCAGTTGATCTACAAACGGAAGGATTTGAGAATGGGGGTGGTGGGAAGCACCCTGCAAAATGGTGATTTTGACAAGCCTGAATATCAGCTTGATCCATAACGGGGGGGTTTACAAACGTGGCCGAAGATACAGTTTCTATTGGTGAATATTTGTACATACGCAATAGATACAATTTCTGAAAAAAGAAGAAAACTACCGAGATGTGTATTGTTCTCATTCTTTTCTGTTCATAAATTTGAGTGTAGAGATTCATTCCGTAGATGAAGTTCAGATATCGTGTAATTAA | |||||||||
gi|190543490|gb|FG924378.1|FG924378 UCRVU09_CCNT6518_b1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vign TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): CAGACTCAACACAAACACTTTTCTCTTAATTCACACTCCTTCTTCCTATAACAAAACTCCAACTTCTCCTTTATCTTCTTTTCTTTTGTTTTCTTCACTACACAACTTTTCTTCAGCTTTCAACAAAACACTACTTAGCAACAAACAAGAAGAAAAACAAGAGGGTGTTTGGGGAATTGGCTTCCAAAATTTATGTGTTTTATTCTCTTGCCATGTTGGTTGCCGGCGGCAGAAGGGTCATCTTCTATGCGTGTGTGGTGCTGATGCTCGTGGCGTTGCATACGTGCCACACGTGCCAGGTTGAGGGGATTCGTGTGCTCCCAGGAAATGCAGTGCCCGACGTGGAATTCAGTCATGGCAGTGTGAATGATAACAATAAGAGGAAGGAGGATCTGTTCAACAAGTACTTCAATGGAAGGACTCATCTTGCTCGCACCAACACAACCCAAAAGGGCTTTGATGAAGCCAAAAGAAGAGTACCGAGTTGCCCAGATCCTCTCCATAATTAACCAGTAGAATTCCCATCCAATTTTCCATCTNTCATTTTTTTTTCTTCTGTGCTTTTTCTTTTCTGTCTCTCCAGTATTGAATTTATTCTGGTTTACATATATATGTTCATCCAAAATACCCACGTTTTTCTCATCATTTTCTATCCAGTAAT | |||||||||
gi|190461882|gb|FG857543.1|FG857543 UCRVU05_CCNN21316_g1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTATACTATTCTAAACTCGTGTGTCTAAATCCAAGTTATTTCAACCCGAAACGTTATTCTTGGTTTGGAATAACCAAGGAGGAGTTGGTAAATGGCAACTTACCAGGATACAACATGCTGGAACTTGATGCTTCGAAATAATTCTTAGAAGAAATTACAGATAATCTATCTGTGTTGTATTTAAAAAACTAAGAGGCTGAACATATTCATACACAATCACTCTCCATGCATGCTGCATCGTTTCCCTTTGTTTTTTCCCATTAGCTGAAGATTAAATATTGTTGTACATACACCAAAAAGAGTACAGTATTGTACTTTTTCTCTTTTGTCACTCACGGTGGTCATGAAGATTTCGCTGTTGGGACTTCCTTTCTCTCTTAAAAGCTTTGAGAAGATCCATGCCAAGACCAATGTTGAGCAAATTCATCCCAGCCATGCCCAACAGAGCCAGTGGTAGCTCTACACCCTTTTGAAATTTGTGAGCATCCTTCATGAGCTTGGCTGTGATGAGAATGTGAGGTACAGATCTTGCCACACAGAAGGTGACCCAATTCAGAAACCATTCTAACTTAACAAGAATGCTCTTTGCATCCCGAATACCGGCCATTCGTCTCACTTTTCTCACATGCAGAAAGATGGAATGC | |||||||||
gi|190427748|gb|FG823042.1|FG823042 UCRVU04_CCNI7462_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna u TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): CAGGCTTTCTTCCCCTATTTTTGGTTAGAAATTATCAGAACATAAATTTCAAACCTCCTTATGTGCTTTGTGCATGTTTGGTTTGGCATGGATCAAGTCAAATGTTGATTCATAATCCAAATCCAAACTGAAACTACTTTGAGTAATTTCCATGTTTTGCATCCAAAACATGGATTCGGGATTCCATGCCAAACCAAACACACACTTAATGTATCCTAGGACGTATCAATAATTTCAGATTTTGCTCTTCCTTGCCTATAAAACACATTCAACTGTTTCACTCATGTTTAGCAGATAACAATGGTAGAGCTGGTGGCTTTCTCATGGAATTTGCTTCATATCCAAAGCTTACATTGAGAAACACCTTGCCAACTCCAAGATCAACCGAGCCACTACCTGGAAATCATGCTGCAACCTGGCAGAGCTCAGACACACCATCTGAATTCTTCCTGCATGGATCAGGAAGTGGTGGAACAAGCTTCCTTGGTTCCAAACATCCTTTTGTGGAAAGCTACACCGGAGTCACCGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAGAACCACACAACCAAGTGTTGAACTGAACAACAATAACAACAATAACAATAACTTGTTGAATTTC | |||||||||
gi|182398584|gb|FF394662.1|FF394662 MOOEA04TR MOO Vigna unguiculata cDNA 3', mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): CAAAACATATTTCAAAGTGGCATCCTTTTCCCTGGAAAACAGTCTCAGAACTCTCAGAGTGGACGCATCAAACTGGAAGAAGATTCCTTGTACAGTTCCCAACTTGCTGCACCCGTCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCCTCACGCCATGCAGCAGGAAATCCATTAGCCGGTGCCCGAATCCTTCACGGCATTCACATTCAAGATAGAGATGACCTAGTTTCCGAAACATCTTTGAGGATAACAAGTTCTGCAGATAAATATGCAGCAAACGAGTCCTTTCCATGCAACACAGCCTCTAAGGAAGTTATCAAGAATCAAACCGCACCATCATTCTCTAATGCAGGCCATGCTCTTCAAGACCATCATGGAGATGCTATTTGCCAACCATCAGATCTGTTCGACATCAAACACAGGCTTTCATCGGAACATGGAGCTACAGTTGATCTGTTCCAGTTGTCCTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAAGACTACTGTTTCCCAACTGTATGAAAGGCTGCTGCTCATTGTTTAAGCCTTGAACTGTCATTAACATGTCCTTTTTATTGATACCTATGTTGTGATGCTATAACAGTGGCCTTAGTAGTGAGACTGTTCTTGGTGGATTGATTCATTTGTGTAGTATGATATCATTGATGGGTAGGGGAGTCC | |||||||||
gi|190415534|gb|FG808021.1|FG808021 UCRVU04_CCNI10231_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): AACGAGAGAAGAAGAAAAAGCTCTCACCTTTCTGTTACCAGAAGTTGTAGACAAGGGTGTGGTCTCTCTCTTGTGTCATTTGGGAGCAGTGATGATTGGTGTTCTAATCATCATTCTGATGATCTCTCCACAAGATGCAGTGCAGCACTGCGTGAACTCATAGCAGAAAACCGTGCTGCCCTAATCACCAGACAACAACATGTTTATGTTGTGCCCCACCATGAAGAAGAAGAACAAGGGTTTGTGGAGATGCTACAACCTGAGTCCAATTATTTTCCTCAACACATGTTTTCTCAGACACAACAATAATGGTTCTGTTCTGATATTGCTGGTGCTGCATGGAGACGCCTTGTTTGCCAAAAATAAGAACTTGTTTCTCCATGGTGGGATTCTAGAGTACTACCCAGTTACACTGTCAATGGTGATTTGTCAAATATTTTGCAGCAGATATATGAAGTAATATGCAGTAATCAATCTGCATGTAATGTTCAATGATATACTACATGTGCAAACTCACCTCATGCTTTGGGATGTTCTACAATTTTGTTTCATAACTATGTTTTGATGTCTATACATAATACATGCATGTTTAAGGTTAAAGTTGAATTAAATATTTAAATTTGTAGAATTTTATGGGTGGATATATATTACTTAAACATGTTCTCAAC | |||||||||
gi|190455594|gb|FG851798.1|FG851798 UCRVU05_CCNN17645_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): CAAAACTCTTTGAGTTGCTTTCTCTCTCTTCTGTCAGTTCATAACTGGCAAACACTGTCACCTCTGCTACATCATCATCCATCCATGGAACTTGTTCCATACTCTGAACCCTCCTCCACCTCCCCGGCATGGCAGGACATGTTCCGATCCGCCTCCTCCCGCCACCCCTCCTCCGCCCCAGCTCCCCACGCGCCGCCCGAGACACCCCACGCGCCCTCTCCCTCCTCACACGCGCCGTCCAATCCGTCATCCGGCGGTGACCCAGATGGAAAAAACACATTTTCCGGCGATGCCCAGGTGCGGCTGGCCCTTTACATAGCCATGGCCCATGCGGGTCTCGCATTCGCCATTTTTATTCTCTACACGTTCTCCAAGCTTCTAGAAGAGTATTTGAGACCTCTGCAATGGGCCGTGCTGTGTTCTATTCCCCTCAGGGGCATTCAGCAGACCCTCGTAGCATTTTGGTCCGAACCACTCCAATTGGGTCTCACAGAAACCGTTCTAGCTGTTCCTGTTGCTGTTTTCAGGGTTTTTGTTGGCACACTCGTTGAGATTCGTGAAGCTTCTTTCAGAGTCGTTTTGAGGACGCCAAAGCCCCAGCAGAACCTCCCCTCTAGGAAGCGT | |||||||||
gi|182404419|gb|FF400199.1|FF400199 MOOFV59TF MOO Vigna unguiculata cDNA 5', mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): TAGGGTTTCGTCTTCTTCTTCTTCTTCACCGTAAACCCTTCTCCATCTCACACCACTGTGCAGCTAACCATGGAAAACTTCACCTGTTCTCCCTCTCCTCTGTCAGCCATTCCATCCGTTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTTTGAAGACTCCTGCAGTATATGCCTAGAGTCCTTCACCATTCACGAACCATCCACTGTTACTAATTGCAAACATGAATATCATCTGCATTGCATTCTTGAGTGGTCACAAAGAAGCCAAGAGTGCCCAATTTGTTGGCAATCCCTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTTGAAGTTGAAAAACGCTTGAGATCAAGAAAGATGACTACTTTTCGTACCCGCCTTGAACAGTATGCCTATGAGGATGACTTTTTTTCAGACGACTCTGATTCTGATGACCAGATTATGAGGCGCCTAGCTGCTGCTGCAAATAGATCTCGTCTTGTTCAGAGACAGGAAAGGAATAGATCACCTGGTGCTGGTCCATCAGATGTTCTTGATATTAACTCTTCCATACATGTATCTGGGGGTGCAAACAATTTCACCATCTTCGGGTCCTGCCTCTGGAGTAACATCTACATTTAACAGTCAACCTCCGGTATCAAACACTACATCCGAAAGTGCAAACCGACCAAACACTTATGAGATGTTTTCCTTCCCAGAATCCTTCAATCCAAATTTTCTGCTGCT | |||||||||
gi|182406251|gb|FF403534.1|FF403534 MOOF094TF MOO Vigna unguiculata cDNA 5', mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): GGGAGAAAGACAACGTCGTCTGAAACGGAAATCTATGGAGAAAAGAGGAAGACCATTTGTTGAAACTCTTAGGGTTCTTTCTGACAAAACTCAAGCAAGTGCGGCAATTCTAAGAAACCTTTTAATTTAATGTCAATTGTATGGCCTTGTATTAACTCTCTTCTGTCCTTTACTCACGCATGTTGTACTATCTAGAATAAGCAAAACATGTGAGTTCTATGTAACTGTTATAGCTACCAACTATCTCTGTATAAGAAAAGGTTCACTCCATGAGAGT | |||||||||
gi|182394706|gb|FF389234.1|FF389234 MOOCO59TF MOO Vigna unguiculata cDNA 5', mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): CGGGGTTGAGGAATACAACTTTGAATCCCTGATTTCCAACAACATGGTTAATGTTACAAAAGAAAACTTTGGACGCCCCTTTGAGGAGATTCGGAAAAAAACTGTTAAAAGAAAATGTTGTAAAGTTGAATTTGGATACTTTTGATCTAGAACATCTTGGGGAAACAAATGCTGAGGCTCTTGACAGGATTGCTGATATTTTGCATGGAGAAAGACAACGTCGTCTGAAACGGAAATCTATGAAGAAAAGAGGAAGACCATTTGTTGAAACTCTTAGGGTTCTTTCTGACAAAACTCAAGCAAGGGCGGCAATTCTAAGAAACCTTTTAATTTAATTAATGTCAATTGTATGGCCTTGTATTAACTCTCTTCTGTCCTTTACTCACGCATGTTGTACTATCTAGAATAAGCAAAACATGTGAGTTCTATGTAACTGTTATAGCTACCAACTATCTCTGTATAAGAAAAGGTTCACTCCATGAGAGTTCTATGTAACTCTTACTGAAAGAATCGTGAATGTAATAAGCATCAATGTATAATATTGTGTTCAACGTGTGT | |||||||||