| mature miRNA: AAGCCAAGGATGAATTGCCGG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|156739171|gb|EV243292.1|EV243292 VV_PEd20e03.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence AAGCCAAGGATGAATTGCCGG EST sequence (targeted fragment marked with yellow): AAACAGACCACGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGTGGAGTACTCAGAAAATTGAAACCAGGGAAAATGGGAAGCGACGGTGGCGTAGCCATGAGGAAGCCCAGATTTCTATGCCTCCATGGCTTTCGAACCAGCGCTGAAATTCTCCAGAAACAGGTCGGAAAGTGGCCGGAGTCGGTTCTCGGACAAATCGACCTCGTCTTCGCCGATGCCCCTTTTCCCTCGTATGGCAAATCTGATGTTGAAGGAATCTTCGACCCTCCTTATTACGAGTGGTTCCAATTCAATAAGGAGTTTACGGAGTACACGAACTTCGATGAGTGTCTTGCGTACATTGAAGATTATATGATAAAGCACGGTCCGTTTGACGGGCTCTTGGGTTTCTCGCAGGGGGCAATATTATCAGCTGCTCTACCAGGGCTACAAGCTAAGGGTTTGGCCCTCACAAAGGTTCCTAAAATAAATTTTCTTATAATTATTGGTGGAGCAAAACTGAAATCACCATCACTAGCTGAGAAAGCATATTCATCTACAATTCAGTGCCAATCTATCCACTTTTTAGGAGAGACTGACTTCTTAAGGCAGTATGGGATTGAACTCCTGGAGTCATTCGTAGACCCTTTGGTGATTCATCATCCCAAGGGCCACACAGTACCTAGACTTGATGAGAAGAGTCTGCAAATCATGCTTGGCTTCCTTGAAAGGATTCAAAAGATGCTGCCAGAGAAGGAAGAAGAAGTGTGCTAAAATGGAGGATTTTTTATTTTTATTTTTTGGGGCATAAAAAGATAAATTGTTCCTTTAGTCAATGCCTCTTCAATATTTATTTCCCCTGTAATAGACATTCTAGTTTATGAAGGGGTTAATTTTATTGCCCAGTAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCCGGTCCCCNATTCCCCCTATAGGGAGGTCGTATTACCATTCCACTGGCCGTCCGTTTTACCACGTCCGTGAACGGGGAAAACCCCGGGGGTTTACCCCACCTTAATCCA | |||||||||
gi|156731058|gb|EV235179.1|EV235179 VV_PEb18f11.g1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence AAGCCAAGGATGAATTGCCGG EST sequence (targeted fragment marked with yellow): CCGCCATTTAGTCGACCATTACCATAGGCCCATGCTAGCTTGCTCGAGTCTAGAGTCGACTGGGCCGAGGCGGCCTTTATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACCACAAAACATATTTACATATAAGTTTGCTATTATGGAACTTGGTGTTTTCTTATCCAACTCGCACCAACATAAATAACATCATTATAATCAAGCATTGTGTACTAGGGGGGGGGGGGGTCACAAAACAACCAAATTACCATGATTACCAAATTCAAAGATGATCTTCTTTCCACTGGGTTGAACAAAACTTTCCTTCAATATTCTTATTTACTTCAGCCTTGAACTTCACATCCTTACTTCCCCATTTCAACTTCAGAAGCAAATCAAATTTGGCTGAACCTTCAATGACCTTGGCCTTAGCTAAAAAAATCTCTAAGGGGGGGGGGGGAAAAATCCAGTTGGACCTCATCTGGATGCTTTTAACAACATGATTTGCACCATCCTGGACCTCAGGATCATTAGTTGGCACTGCTTGCCATTCTGACCCATGGCCATCTTGTTTAACACCAAGGGCTGAAGAGGCAAATGACTTGGTCTCTTGAGAATGCTTAAATTCTTGCAACTCCTTGAAATTCATCCATGGCTTCACCCAAACTTTTGCTTCATATATCTTCTTCTTACCAAAATCAATGGCTTCCAGGGTTAGATAGTATATCTTGCCAGCAACCACCTGTTCTTTGGCCTTCAACACCTTCGAAAAATCAAAAAGGGCATTCTGATTCCTGTTATGCTCTTGCACCGCGAATCGGGCGATGCTCTCAATCTCACCGCTGTTTTGGATTCCCTCCACAAAACCCAAACGCCCCCCGAAAAAGGGTCCATCGGTCTTTCGGCAATCCTTTATAAAATTTGTCCCTCCCCTGCAAAAAACCTTATCTGAAAAAAAACCAGGCCCAAAAATCTTCCTCCGGACAAAGAAAAACCCAACTCTATTTGAGAGCCCCCCCAAAAAAAAACCCCTTTTCCCGGTTTTTTCTCCCCCCCCAAAAAGAAAAAAAGGATACTTTTCTCCCCCGAGGGAG | |||||||||
gi|110362334|gb|EC925861.1|EC925861 WIN0210.TB24.1_E09 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA AAGCCAAGGATGAATTGCCGG EST sequence (targeted fragment marked with yellow): AAGGCTGAGCTGAAAAGAAAGCTATCAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAACATGCAATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACTAAGAAGCTTGATAACAATGATGCCAATACAACAGCAGAAAAAGGTTCAGTCTCTGGTGCGGCCCTTTCTACACAATCTGCCAGTTCATCAGGCTCCGAACACCTGCCTACCAACTCTAGTCGAAATTTGGATTCCTCCAGTGTGCAGCAAGAAGAGAAAGGACGCACAATTCAAGATATGCTTGAAGCACACACTTACTCCAATGGCAACAGGAATGGCCATGGTCTATCATCAGCATACCATTCATCAAATGGCAGTGAGGGAGGTGACTGCTTTGGCCAACCAAGGGAAAACATGCAGCTGAACACGGCCCCTCATAGGGCTCTACCCATCAAATAAAAACCTATCGGTTAGGTGAAGCTGGAGGTGCAGTATCCACTTTGAGGACGGAAACCCTCATGGTTACATGGCATTTCCCAGGCAATTCATTCTTGGCTTTGGTTACATGGCGTTTCTGGGGTGATACTAGGGATGGAGATACATGGTTTGGCCTTTGCTGTCTCCATTCTAACCCTACCTCCATCTCTACTATTCACCCCTTCTGTATAAAAAGGCAAAAACCCGAAATCGTGGGATTAACAAGTAGAGATAGTGTGAATTTGGAGATTCTAAACAGTTAAAACATCTGAAGGTTTCCAATGTGTGATGACCTTTGTGTGAAACAGAACGTTTGCCTTTGCTTCTCCAATTGTGTTTCATGTTAACTATCTTAATTAATTGTTGT | |||||||||
gi|254914719|gb|GR906820.1|GR906820 79M_G04_014 ovule cDNA library of a seedless grape (Vitis vinifera var.Thomson seedless) Vit AAGCCAAGGATGAATTGCCGG EST sequence (targeted fragment marked with yellow): ATCCACAATACTATACATGATCTTTTTCGGAAACCCCATTGTGTTGGACCCGGGAAATCGGCCATTACGGCCGGGCGGAGTACCCACCTTCGATGAGTGTCTTGCGTACATTGAAGATTATATGATACAGCACGGTCCATTTGACGGGCTCTTGGGTTTCTCGCAGGGGGCAATATTATCAGCTGCTCTACCAGGGCTACAACCTAAGGGTTTGGCCCTCACAAAGGTTCCTAAAATAAATTTTCTTATAATTATTGGTGGAGCAAAGCTGAAATCACCATCACTAGCTGAGAAAGCATATTCATCTACAATTCAGTGCCAATCTATCCACTTTTTAGGAGAGACTGACTTCTTAAGGCAGTATGGGATTGAACTCCTGGAGTCATTCGTAGACCCTTTGGTGATTCATCATCCCAAGGGCCACACAGTACCCAGACTTGATGAGAAGAGCTTGCAAATCATGCTTGGCTTCCTTGAAAGGATTCAAAAGATGCTGCCAGAGAAGGAAGAAGAAATGTGCTAAAATGGAGAATTTTTTTTTATTATTATTTTTATTTTTTTGGGCATGAAAAGATAAATTGTTCCTTTAGTCAATGCCTCTTCAATATTTATTTCCCTGTAATAAACATTCTAGTTTATGAAGGGGTTAATTTATTGCCCAGTAATAAAAATATGAATTTATGATGGGGGTTAATTGAAAAGGGATTAAAAGAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|110398973|gb|EC965457.1|EC965457 WIN0818.C21_C23 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0818_C23 3', m AAGCCAAGGATGAATTGCCGG EST sequence (targeted fragment marked with yellow): GGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGAGCCCCCTGGGAAGCCCTTGGTCATCTGGTTTTTATCCAAGGCAAATGAAAATATTCTCGGCTTTTGTTTGCTGGGCGGCAAATCATTCTTGGCTTTGCTTTTGTGCCTGCAGTGAGGGGGAAAAGGGGTTACAAGGAAATGAGTGATGGGCATTGTAGCTTATTTTGATATCTGATAGAACTTCACTCCATTCTTCCCATAATACTGTCTTCTGTACAAAAAAAGGTGGACGAACTCAAGTAGGATAAGTAGGAACAATCAATCTGTAGGGACATTCTA | |||||||||
gi|110697807|gb|EE075206.1|EE075206 C4B07815 Berries veraison stage (VvC4) Vitis vinifera cDNA clone C4B07815, mRNA sequence AAGCCAAGGATGAATTGCCGG EST sequence (targeted fragment marked with yellow): CTCATTTACTTGGAATGCATGAAGCTAGAATGCCTTTACCCCTTGAGATGACACAAGATCCTGTTTATGTTAATCCAAAGCAGTACCATGGGATTTTGAGACGAAGACAGTCCCGTGCCAAAGCGGAACTTGAAAAAAAGTTGATAAAAGTCCGAAAGCCATATCTGCACGAATCCAGACACCAGCACGCCCTTAGAAGGGCAAGGAGTAGTGGAGGCCGTTTTGCCAAAAAGAATGCAGCTGAAGCTTCTAAACACGCTTCTGAAGAAAAGGTTACAGCTTTAGGCTCAGCCCCTTCACCACAATCTGTCAGTTCATCGGGTTCAGAGCGGTTGCCATCTGACTCTACTGAAACCTGGAATTCCTCCAGTAGACAGCAAGAAGCAAGAGGGCCTCAAGCACATGACACCCATGAACCACCCAAATATAAAAATGGCAGCGGCTACTACCAAAGTCCTGGTGACTCACAGACAACAAATCATTCACACACGAGTGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGAGCCCCCTGGGAAGCCCTTGGTCATCTGGTTTTTATCCAAGGCAAATGAAAATATTCTCGGCTTTTGTTTGCTGGGCGGCAAATCATTCTTGGCTTTGCTTTTGTGCCTGCAGTGAGGGGGGAAAGGGGTTACAAGGAAATGAGTGATGGGCATTGTAACTTATTTTGAN | |||||||||
gi|110383364|gb|EC947732.1|EC947732 WIN0542.C21_I13 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone AAGCCAAGGATGAATTGCCGG EST sequence (targeted fragment marked with yellow): AGCACCTACCAGAGTCCCACTGCCCTTTGATATTGCAGAGGATGGACCTATTTTTGTCAATGCAAAACAGTATCATGGAATTCTCAGGAGGAGGCAGTCACGAGCAAAGATGGAGGCCCAGAACAAACTTGTCAAAGCCCGAAAGCCATATCTGCACGAGTCTCGGCATCTTCATGCCCTAAATAGGGTTAGAGGATCTGGTGGACGCTTCCTCAGCACGAAAAAGCTCCAAGAACCGGACTCAACTTCCAATGCTGGCTGTCATAGTGTATCTGGCTCTGGTCATTTTCACCAGAAGGGAGACACAACTGAGTATGAAGTCCATCAGTCTGATACTGGCAAATTTGTTGCTTCAACTACATCCAGCTCTGATGTCACCAGTGTCTCTAACAGTGATGTCCTTTTCAGGCAGCCGGAGCACAGGTTCTCAGGCATGTCTCCCCACATGGGTGGAGCCATGCAAGGTGGTGGCGGTGGGACTTATGGGCAATGGAGTCCTGCTCCTGGTTGTCCGGTGAGAAGTCGATAGGAACAAGATCGATGGAGTCACTGGTCTGGGCAATTCATCCTTGGCTTTGTTACTTTCGTTTCATGCGTGTTAAGAAGATAAACACATCAAACTTCATGGTGTAGTAGAAATACTCTGCCTTTCCCATTTCCAACTGCATACATTCTGGCTCTGTAAACATGGTTGAGAAGAGGCTATGCTTGAAACTCTCTGTTTGTGAACCATTGTTTTGTTTCTTCAAGACAATGTGAGATATTGGTTCACCGGTATTTTGTTTGTTGCTTACAGAAAGCAAACCCTGCCTTTTGTGCTAGTGTAGTGATGTTGATGCCAGTTTTTC | |||||||||
gi|156731291|gb|EV235412.1|EV235412 VV_PEb20b03.g1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence AAGCCAAGGATGAATTGCCGG EST sequence (targeted fragment marked with yellow): AGTGAGGGNGGCATTCTGATGAGCGCATGCTAGCTTGCTCGAGTCTAGAGTCGACGGGGCCGAGGCGCCCTTTAAGATTTTTTTTTATTTATTTTGTGCTTTTTCTGAAGCGAAAAAATATTTGCGTATTAGTGTGGGATTATGGAAGGTGGAGTTTGCTTATCAACCTCGCGCCAACATTGGAAACATCTCTATAATCAGGGATTGGGTACTAGGTTTTATAGATTAACACATATCACCCAAATGACGATGATTACCGAATTCAAAGATGATCTTCTTTCCACTGGGGTGAACCGAACTTTCCTTCAATGTTCTTATTTACTTCGGCCTTGAACTTCACATCCTTACTTCCCCATTTCAACTTCAAAAGCAAATCGAATTTGGCTGAACCTTCAATGACCTTGGCCTTAACTCGAAGAATCCCGAAAAGTTCATATCGGAAAATCCAGTTGGACCTCATCTGGATGCTTTTAACAACAAGGATTGCCCCATCCTGGACCTCTCGATCATTAGTTGGCACTGCTTGCCATTCTGACCCATGGCCATCTTGTTTAACACCGGGGTCCGAAGAGGCCAATGACTTGGTCTCTTGAGAAGGCTTAAATTCTTGCAACTCCTTGAAATTCATCCATGGCTTCGCCCAAACTTTTGCTTCATATATCTTCTTCTTACCAGAATCAATGGCTTCCAGGGTTAGATAGTATATCTTGCCAACAACCACCTGTTCTTTGGCCTTCAACACCTTCGCAAACTCAAGAAGGGCATTCTGATTCTTGTTATGCCCTTGCACCGCGAATCGAGCGATGCTCTCTATCTAAGCGCTGTTTTGGATTCCTCCACAATCCCGGACGCCACCGAGAAAGTTCATCGTCTTCGGCATCCTTATGAAATTGGCCTCTCTGCAAAAACTATCTGAAAGACCAGCAAATACTCAGCGACAGGAGAACCCACCTATTGGGCTCCCAAAATTTCCTTTCGCTTTTCTCCCCAAGAAAACGCACTTCTTCCCGGCCGTAATGGCCGAATTCCGGGGTACCAACACAATGGCCCGCTTCCCGAGAAAAAAAAAAAAAACCTCTTCCGAATCTCGAAGCTGGGCGAAATCGGGGGCAAAAGCCGTTTTCC | |||||||||
gi|110360638|gb|EC923903.1|EC923903 WIN023.C21_C02 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clo AAGCCAAGGATGAATTGCCGG EST sequence (targeted fragment marked with yellow): GAGCTTGAAAAGAAAGCTATCAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAACATGCAATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACTAAGAAGCTTGATAACAATGATGCCAATACAACAGCAGAAAAAGGTTCAGTCTCTGGTGCGGCCCTTTCTACACAATCTGCCAGTTCATCAGGCTCCGAACACCTGCCTACCAACTCTAGTCGAAATTTGGATTCCTCCAGTTTGCAGCAAGAAGAGAAAGGACGCACAATTCAAGATATGCTTGAAGCACACACTTACTCCAATAGCAACAGGAATGGCCATGGTCTATCATCAGCATACCATTCATCAAATGGCAGTGAGGGAGGTGACTGCTTTGGCCAACCAAGGGAAAACATGCAGCTGAACACGGCCCCTCATAGGGCTCTACCCATCAAATAAAGACCTATCGGTTAGGTGAAGCTGGAGGTGCAGTATCCACTTTGAGGAAGGAAACCCTCATGGTTACATGGCATTTCCCAGGCAATTCATTCTTGGCTTTGGTTACATGGCGTTTCTGGGGTGATACTAGGGATGGACATACATGGTTTGGCCTTTGCTGTCTCCATTCTAACCCTACCTCCATCTCTACTATTCACCCCTTCTGTATAAAAAGGAAAAAACCCAAAATCGTGGGATTAACAAGTAGAGATAGTGTGAATTTGGAGATTCTAAACAGTTAAAACATCTGAAGGTTTCCAATGTGTGATGACCTTTGTGTGAAACAGAACGTTTGCCTTTGCTTCTCCAACTGTGTTTCATGTTAACAATCTTAATTAATTTGTTTGTCTTTAAAAAAAAAAAAAAA | |||||||||