| mature miRNA: CAAAATCATCCCCCATGCTGT species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110711676|gb|EE088429.1|EE088429 S6B02533 Fruits 7-9 mm (VvS6) Vitis vinifera cDNA clone S6B02533, mRNA sequence CAAAATCATCCCCCATGCTGT EST sequence (targeted fragment marked with yellow): CAGCAACAATCGTGACTAATTTCATGGGCACTCTGAATCTTTGTGGCCTCCTAGCCGGTTTCTTAGCAGATGCCAAACTAGGCCGTTACTTGACAGTTGCAATCTTTGGATCCATAACTGCCTTGGGGGTGATTTTGTTGACGGTAGCCACAACCATTCCTAGCATGAGACCCCCTCCATGCAGTGACTACATGAGGCAGCACCACCAGTGCATAGAGGCCAACGGCAGTCAACTAGCCATGCTCTATGCTGCTCTCTATACTATAGCCCTAGGTGGTGGAGGAATAAAGTCCAATGTTTCTGGTTTTGGTTCCGATCAATTCGATAACTCTGATCCCAAAGAGGAGAAGGCCATGATTTTCTTCTTCAATAGGTTCTATTTCTGTGTTAGCATAAGCTCCTTGTTTGCAGTAACAGTGCTGGTGTACATACAAGACAATGTGGGAAGAGGGTGGGGTTATGGAATATCAGCAGTGACAATGGTGATAGCAGTCACAATCTTGCTCGGTGGGACACCATTTTACCGATTCAAGATGCCTCGAGGTAGCCCTTTAACTGTCATATGGAAAGTCTAATTCTTGGCTTGGAGGAAGAGGAACCTCCCTTATCCTTCTCATCCCAGTTTGTTGAACGAGTACCACAATGCCAAAGTCTCTCACACTCAAGGATTCAAGTGTCTCGACAAGGCTGCAATCCTAGAAGACTATTATTCTGCCAGTGGAAACAAGGACACCCTTGGATAGTTTCTACAGTGAACCAAGTTGAAGAAGTGA | |||||||||
gi|122689534|gb|EC940676.1|EC940676 WIN0520.C21_G19 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone CAAAATCATCCCCCATGCTGT EST sequence (targeted fragment marked with yellow): GCAAAGGGCTGCCTCAATGACGGAGCTAGCAACACCCTACGGCCAGCACATTTGACCATCTGATCACTTGCCGGGTAGCTTGAAACCATCCTTGTATACATCATTGTGGTGGAGCCCAGGATGTCATCTCCAAACCCACATGCTTGGAAGAACAGCCTCTCATTCTCTGCACAGAGGGCCGCTATATCAAAAATGTCTCTACTTGTGAGTATTCTTACAATCCTCTTAACTATCATTCTGCCAATTCCCATTCTCCGCAGTGAAGGCATAACCATAATGTCGTAGATTGAGGCCGTCAATCCCTGATCAGAAACGGCTCGGCCAAAGCCCACCAACTGGCCATTGGATGGCGTCACCGGGATCGCCCGCTGAAGTATATCTCCCAGCCCCATCATGGGGGATGATTTGGCGGTACAATCATCGTTATCGTAAGGTCTGCAGAAGACGGAGACGACAACGGAACTGTGGCGGAGAGCAATCCTGAGCTTGTGGATGTCGACGGGCTCAACACGGCCGTCGGCATCCACATTGGGGAAACGATGGCATGAGATATTGGAGGAGCTGTAGAGGTCTCTGAGTTCGTGTAGATTTATGTGAGATGGGTTTGTGGATATGAATATAGGAGGCAGCGGAGGCTTACGCGCTCCGCCAGCTGCTGCTGCTATTGGGCCGTTGCTTCTTTTTCTGCTTGCCCCCCATTTTAATTTGTCCGCAAAGCGCTGGACTGTGGCCGGAGCA | |||||||||
gi|110720740|gb|EE096927.1|EE096927 S8B05487 Fruits Veraison (VvS8) Vitis vinifera cDNA clone S8B05487, mRNA sequence CAAAATCATCCCCCATGCTGT EST sequence (targeted fragment marked with yellow): GACAACGAACCATCCAATTTCAGCACTGCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTGCGAAAATGGTTCTAGTTGATGCCCATGCTGGCAAAGACGGTACAGATGATGGAGCTCTGGATTTTAGGGGAAACCCTGTGGACAAGACACGAACTGGGGGATGGCTTGGTGCAGGGCTCATTCTAGGAACTGAATTCGCGGAGAGGGTATGTGTGATGGGGATATCAATGAATTTAGTGACATATTTAGTCCAAAATCTGCATATTTCAGCAGCAAAATCAGCAACAATCGTGACTAATTTCATGGGCACTCTGAATCTTTGTGGCCTCCTAGCCGGTTTCTTAGCAGATGCCAAACTAGGCCGTTACTTGACAGTTGCAATCTTTGGATCCATAACTGCCTTGGGGGTGATTTTGTTGACGGTAGCCGCAACCATTCCTAGCATGAGACCCCCTCCATGCAGTGACTACATGAGGCAGCACCACCAGTGCATAGAGGCCAACGGCAGTCAACTAGCCATGCTCTATGCTGCTCTCTATACTATAGCCCTAGGTGGTGGAAGAATAAAGTCCAATGTTTCTGGTTTTGGTTCCGATCAATTCGATAACTCTGATCCCAAGAAGAGAAAGCCATGATTTTCTTCTTCAATAGGTTCTATTTCTGTGTTAGCATAAGCTCCTTGTTTGCAATAACAGTGCTGGTGTATATACAAGAAAATGTGGAAAAAAAGGTGGGGTAAGGAAAAACCACAATGAAACTGTGATTTCATC | |||||||||
gi|254917283|gb|GR906109.1|GR906109 384i_A10_002 ovule cDNA library of a seedless grape (Vitis vinifera var.Thomson seedless) Vi CAAAATCATCCCCCATGCTGT EST sequence (targeted fragment marked with yellow): GGGGTTAAAGAAAAAACCATTAGAAAAGCGGTTAAGGATATTCTAAGATTGGTGTCTGTAGTTGTGGACCTTTGTAGGTTTTGGTATTTTATGACAGCTTGGAGGATGATTGTGTTGTATATTTTGGTACTTTGGAGAAAGGAAGTTAGAGGAAGAAGTTTCTTGGTGTAGTGGAGATCTTGGTTAGAAATTTGAAGTTAGGAATCACAAATTCTTTGTACTCTAGGATTCTGGTTTTGGGGGAGTGGAAAGTGGGCTCCCTTTTGATATGTTATTGAGCACTTGAATCCAGTATGAGGCGAAGAGAGCTAGAATACTGTTTCTCCCCCGCTAAAAAGGCTCTACCTTTAAATTTCTTCGAACGACGATTTTTTTTTTTTTTCAGAGAGGGTGTGCAACATCCCACAATATTTGTGGGGGGGGGCAGACCACACACCCCCGGGGCAGAGTTTAACGGGGTTATCCCCCCGGGCAATTCAAGGGGCTTTTTTAGGTATAAACAAAAACACAAACAGAAAAATTTTTTTTGTCATTTTTGTTGCCTAAACAATATTCCCAAAAAAATTCTTGTAAAAACAAATCCAGCAACTGTTCAAGATACTGTCTCAGCTCTTTTTTTTAAGTCACAAAAACGACAAACACAGGTTTAGAAATATACGAAAACATGACTACAACTGGACGAGAGACATCATAAAACAATACACAAACACAAAACGAGGATAGAGGAGATAACCTAAATATCCTACCCCTAACCATTTAGGATAACCAATATAAAATGTATCTCAAACTTCAGTAGAAAACAATTTTAAAAGAAAATTAAACTCCAGATATCATATACATTTTGAGATAACCGGATAAACATAAAAAGGACAAAATTACGCCAAAAAAAAACAATGTTACCTACGTCCGCATCCACCTAGCACGCTCAATTCCCGCGTAATCAGAAAATCGTAGACTGACCGCCCCAGCCACTCGACCACTAACCAATCCTCCTCACTATTCTATACCCTAACCACTCCACCCCACACAAACTCACAACCTATACCACTGCAGCACACAACTACATAAT | |||||||||
gi|294967116|gb|GW839991.1|GW839991 Summer_Black_3388 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence CAAAATCATCCCCCATGCTGT EST sequence (targeted fragment marked with yellow): GGGGGTTGGAGAGGACAAAGGCGTCCCTGGAAGCTCCTAGAAATCTATCGTTACAGATCGGAATTAGGGTTTTTGCGTTCGTTTTCGGCGCTGTTGGTTGCTTGCAGCTCAGAGTCTCGAATTTTTCTGCGGTGCTTTAGGTTTTTGGAGGAAGGTTTCTCTGTGATAAACATGACATCAGAGCCAATGGCGGTGTTCAAATTTGGTGTGGGATAAAGGATCTTTAAGGAATGTCAGACTTGCAGGTGTATGAGCTGGAAGATATTGTGTGGGATGATTTTGCTGAGAGTGATGATCATATAGTGCCTCATCCTGGTGGTGAACATGGGAACGAATGTCCAGTTCGGGGTGATAACTGCAAAAGACCGCGATGTGAAGTAATTGGTGTCAATAATAATGCTGATGACAGGAATGCTACTAAATATTTTAGACAG | |||||||||
gi|110713587|gb|EE089638.1|EE089638 S6B05060 Fruits 7-9 mm (VvS6) Vitis vinifera cDNA clone S6B05060, mRNA sequence CAAAATCATCCCCCATGCTGT EST sequence (targeted fragment marked with yellow): GACAACGAACCATCCAATTTCAGCACTGCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTGCGAAAATGGTTCTAGTTGATGCCCATGCTGGCAAAGACGGTACAGATGATGGAGCTCTGGATTTTAGGGGAAACCCTGTGGACAAGACACGAACTGGGGGATGGCTTGGTGCAGGGCTCATTCTAGGAACTGAATTCGCGGAGAGGGTATGTGTGATGGGGATATCAATGAATTTAGTGACATATTTAGTCCAAAATCTGCATATTTCAGCAGCAAAATCAGCAACAATCGTGACTAATTTCATGGGCACTCTGAATCTTTGTGGCCTCCTAGCCGGTTTCTTAGCAGATGCCAAACTAGGCCGTTACTTGACAGTTGCAATCTTTGGATCCATAACTGCCTTGGGGGTGATTTTGTTGACAGTAGCCACAACCATTCCTAACATGAGACCCCCTCCATGCATTGACTACATGATGCAGCACCACCAGTGCATAGAGGCCAACAGCAGTCAACTAGCCATGCTCTTTGCTGCTCTCTAAACAAAACCCTAAGTGGGGGAGGAATAAATGCAATGATGCCGGGGTTTGGAACAGAATGATACGGTCGACAGGATTGCAATTGGAGAACGAATGAATTATATCAAAAATAGGTCAAATTGGTGATTACAGGAGCACCTAGATAAATATAAAAGAGGGGAGAAGAGAAGAATAGAGAGGGAAGAGAGAGGTAAGGGGAAAGTAAGTGACGAAATAGGAATAGAAATTTTA | |||||||||
gi|294964020|gb|GW836895.1|GW836895 Summer_Black_0292 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence CAAAATCATCCCCCATGCTGT EST sequence (targeted fragment marked with yellow): GGGGACAACGAACCATCCAATTTCAGCACTGCTCTCTCTCTCTCTCTCCCTCTCCCTCTGCGAAAATGGTTCTAGTTGATGCCCATGCTGGCAAAGACGGTACAGATGATGGAGCTCTGGATTTTAGGGGAAACCCTGTGGACAAGACACGAACTGGGGGATGGCTTGGTGCAGGGCTCATTCTAGGAACTGAATTTGCGGAGAGGGTATGTGTGATGGGGATATCAATGAATTTAGTGACATATTTAGTCCAAAATCTGCATATTTCAGCAGCAAAATCAGCAACAATCGTGACTAATTTCATGGGCACTCTTAATCTTTGTGGCCTCCTAGCCGGTTTCTTAGCAGATGCCAAACTAGGCCGTTACTTGACAGTTGCAATCTTTGGATCCATAACTGCCTGGGGGGTGATTTTGTTGACGGTAGCCACAACCATTCCTAGCATGAGACCCCCTCCATGCAGTGACTACATGAGGCAGCACCACCAGTGCATAGAGGCCAACGGCAGTCAACTAGCCATGCTCTATGCTGCTCTCTATACTATAGCCCTAGGTGGTGGAGGAATAAAGTCCAATGTTTCTGGTTTTGGTTCTGATCAATTCGATAACTCTGATCCCAAAGAGGAGAAGGCCATGATTTTCT | |||||||||
gi|156725360|gb|EV229471.1|EV229471 VV_PEa06h10.b2 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence CAAAATCATCCCCCATGCTGT EST sequence (targeted fragment marked with yellow): GGGATGAGGGAAAGGAACTGGAAGGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNTGGCTCTCTAAAAANNNNNNNNNNNTNNNNNATNGNNGATGGCCCCCCTTTAAATCCTCTGAGATAGAGGGGGTCACCTTATTCGAGACAGAGATGTTAATCGTTCGTTTTCTATAGCATGGTACTGAGCGGATGACTCAATTATAGAAGGTGCAGAAGGGGGGATGATTTGGGCGCTATTAACCATTCCTATAATAGTTGTAATGGCAGGCCAGTTGGGGTGATCCATGGAAAAATCTGAGGTCGTAGCTACTTCCTCACCATATGGTTATCGCCGCCGCAGATACAAGAATGATCATGAAGGATACTCTCCATGGGGAGTGGATGCTTTAATAGGGATGTTAGTTAGGATGGAGCAATAAGAGTGTAGTGTGGGGGGGATATCTGGCTTGGTTAGCATGTGAATGGGAACTGAGTATGATGTGATAAGGTTGAAATAGGAGAGTAGAATAACTGGGGTATGGGTAGAAAATGACTAAAGTGAGTTAGAGGATCGGATTTAACGGTTAGGAGTGTAGGATTAAAAATATGGTGAAATAGGAGAGGTGAGATGCGTAGGAATAAGGGGAAAGAAGAAAAGAGTAAAATATTAAAAGGGGGGACAGGATGGGCGTATTGAAAATGGGGAAGGCATAAAAAGATAAATCAGGGGGGTGGAAATACAGGACAGAGATGAGAAAAAAGGGGAGAAGAAGGGATTGGAAATAAAAGATTAGGGGGATGTGGTAAATAGAAAGAATAGGGAGTGGGAAAAGACGCGGAAATTATGGAAAATGGAAGCGCGGTTGGGAGCAAAAATCCAGTGAGGAAAAAGTGGGGGAAAAGAGGAAAAAAGGGGTAGGATTATATTAGAAAGTTGGAAAAAAAAAAGAACGAAAGAGAAAAGAGGGAGAGGGGAAATTTGTAAAAGAGAAATAGGTGAGGAAGGAAAATTCAGGGGGAAAAAGTATAGAAGACAAAAAGAAACCAATCGAATGAAAAGTGCGAGAGGAAAAAAAGGTGGGAAAGAAGCGCACCGTATGTGAAAGGGAGAAAAGAGAAATAGCACGAGGAAAAATAGTGGGACTAAGAGAGGGGATGAATGTCCAAAAGTTGTAGAGAAGAAA | |||||||||
gi|122689400|gb|EC938611.1|EC938611 WIN057.C21_C08 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone W CAAAATCATCCCCCATGCTGT EST sequence (targeted fragment marked with yellow): GGTCAAAATGAGCATGGGCATGAAGATGACGATGACAATGAGGGAGGATATTCAAGAAAAAGGGCGAGAAAGGGGCTGTTCCCATCACCATCGCCATCACCATTGATGAGGCAATTGAGCAGTGAGGTGATGAGCGTGCTGCAAGATGGAACAAAGAGCACATTGGAGAAGAAGCAATGGATGAGGAGCCGGATGATGCAATTGGAGGAGCAGAGGGTGAGCTACCAATGTAAAGCGTTTGAGCTGGAAAAGCAGCGGTTGAAGTGGGTGAAATTCAGCAGCAAGAAGGAGAGGGAAATGGAAAGGGAGAAGCTGGTGAACCAGCGAAAGAGGCTGGAAAACGAGAGAATGGCACTTCTACTTAGGCAGAAAGAGGTGGAGTTGCTTGAGATTCATCATCAACAACAGCAACAACAGCACTCTTCCAACAAGAGGGGTGAAATATCCTCTTTTGCTGGATGAATTGTATATAGGAGCGGGTGAAATACATAGCATGGTGGGTGGTTTTGTAGTTTTCTCTTACTCCAAAATTTTGTTTATGATTTTGGTACTAGAGTATGTATCCATCCAATCTTGTCTACGCTCCTCTTAGTTCATTCTCCTCTTCTGGGTTGTTTTGGTGAAGCATTAAACATAACCATTAACTCAAAAAAAAAAAAAAA | |||||||||