| mature miRNA: CAGCCAAGAATGATTTGCCGG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110398973|gb|EC965457.1|EC965457 WIN0818.C21_C23 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0818_C23 3', m CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): GGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGAGCCCCCTGGGAAGCCCTTGGTCATCTGGTTTTTATCCAAGGCAAATGAAAATATTCTCGGCTTTTGTTTGCTGGGCGGCAAATCATTCTTGGCTTTGCTTTTGTGCCTGCAGTGAGGGGGAAAAGGGGTTACAAGGAAATGAGTGATGGGCATTGTAGCTTATTTTGATATCTGATAGAACTTCACTCCATTCTTCCCATAATACTGTCTTCTGTACAAAAAAAGGTGGACGAACTCAAGTAGGATAAGTAGGAACAATCAATCTGTAGGGACATTCTA | |||||||||
gi|110697807|gb|EE075206.1|EE075206 C4B07815 Berries veraison stage (VvC4) Vitis vinifera cDNA clone C4B07815, mRNA sequence CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): CTCATTTACTTGGAATGCATGAAGCTAGAATGCCTTTACCCCTTGAGATGACACAAGATCCTGTTTATGTTAATCCAAAGCAGTACCATGGGATTTTGAGACGAAGACAGTCCCGTGCCAAAGCGGAACTTGAAAAAAAGTTGATAAAAGTCCGAAAGCCATATCTGCACGAATCCAGACACCAGCACGCCCTTAGAAGGGCAAGGAGTAGTGGAGGCCGTTTTGCCAAAAAGAATGCAGCTGAAGCTTCTAAACACGCTTCTGAAGAAAAGGTTACAGCTTTAGGCTCAGCCCCTTCACCACAATCTGTCAGTTCATCGGGTTCAGAGCGGTTGCCATCTGACTCTACTGAAACCTGGAATTCCTCCAGTAGACAGCAAGAAGCAAGAGGGCCTCAAGCACATGACACCCATGAACCACCCAAATATAAAAATGGCAGCGGCTACTACCAAAGTCCTGGTGACTCACAGACAACAAATCATTCACACACGAGTGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGAGCCCCCTGGGAAGCCCTTGGTCATCTGGTTTTTATCCAAGGCAAATGAAAATATTCTCGGCTTTTGTTTGCTGGGCGGCAAATCATTCTTGGCTTTGCTTTTGTGCCTGCAGTGAGGGGGGAAAGGGGTTACAAGGAAATGAGTGATGGGCATTGTAACTTATTTTGAN | |||||||||
gi|110733127|gb|EE109047.1|EE109047 SCB07166 Inflorescence with GA3 (VvS12) Vitis vinifera cDNA clone SCB07166, mRNA sequence CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): ATTTCCATTCTTGTTCGTCATACACGTTCTTGTCCGTCGGATCTGGAATTTTGATTTCCTCCTGCCGATTTGAGTCACATAGCATTTTTGGTGAGAGTTGAGGAAAAAACTTGATCGAGCGTCTCAACTTGCGGTCAATTTTGGGGTTTTGATTGAATTTGAAACAATAAGTTCTCGTCTTCAGCTGTAAAGTTTTGAGGTAGAGAAACGACAAGTTCTGTAACAATGCATTTTAAAAGCATTGTTCGCGAACTTAGGGACATGAGAGATAGTATAGGAAACTCGTCGAGAAGGAGAGCAGAGGGGAAGCACACGAACCGTCGTGGAAGATCGCATATAGCCCCTGAAGGGTCTCCATCTTCATCTGCACTCTTTCAACAACAAAGTCAGTGGGCTAACATGCCTCCCGAATTGCTTCTTGATATAATCCAGAGGGTGGAAGCCGCCGAGGCTTCATGGCCTGCCCGTCGGGATGTTGTTTCTTGTGGATCAGTTTGTAGGTCATGGCGGGATATCACCAAAGAGATAGTCAAGACTCCCGAGCAATGTGGTTGCCTCACGTTCCCTATTTCATTGAAGCAGCCTGGGCCAAGGGAATCCCAAATTCAATGCTTTATCAAGAGAGAAAGGGCCACTTCAACTTTCCGATTGTATCTTGGTCTGAGCCCTGCCCTATCAGGGGATGCCAGTAAATTATTATTGGCTGCCAGAAAGATCAGAAGGGCGACNAGCACGGAGTTTGTGATATC | |||||||||
gi|156739171|gb|EV243292.1|EV243292 VV_PEd20e03.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): AAACAGACCACGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGTGGAGTACTCAGAAAATTGAAACCAGGGAAAATGGGAAGCGACGGTGGCGTAGCCATGAGGAAGCCCAGATTTCTATGCCTCCATGGCTTTCGAACCAGCGCTGAAATTCTCCAGAAACAGGTCGGAAAGTGGCCGGAGTCGGTTCTCGGACAAATCGACCTCGTCTTCGCCGATGCCCCTTTTCCCTCGTATGGCAAATCTGATGTTGAAGGAATCTTCGACCCTCCTTATTACGAGTGGTTCCAATTCAATAAGGAGTTTACGGAGTACACGAACTTCGATGAGTGTCTTGCGTACATTGAAGATTATATGATAAAGCACGGTCCGTTTGACGGGCTCTTGGGTTTCTCGCAGGGGGCAATATTATCAGCTGCTCTACCAGGGCTACAAGCTAAGGGTTTGGCCCTCACAAAGGTTCCTAAAATAAATTTTCTTATAATTATTGGTGGAGCAAAACTGAAATCACCATCACTAGCTGAGAAAGCATATTCATCTACAATTCAGTGCCAATCTATCCACTTTTTAGGAGAGACTGACTTCTTAAGGCAGTATGGGATTGAACTCCTGGAGTCATTCGTAGACCCTTTGGTGATTCATCATCCCAAGGGCCACACAGTACCTAGACTTGATGAGAAGAGTCTGCAAATCATGCTTGGCTTCCTTGAAAGGATTCAAAAGATGCTGCCAGAGAAGGAAGAAGAAGTGTGCTAAAATGGAGGATTTTTTATTTTTATTTTTTGGGGCATAAAAAGATAAATTGTTCCTTTAGTCAATGCCTCTTCAATATTTATTTCCCCTGTAATAGACATTCTAGTTTATGAAGGGGTTAATTTTATTGCCCAGTAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCCGGTCCCCNATTCCCCCTATAGGGAGGTCGTATTACCATTCCACTGGCCGTCCGTTTTACCACGTCCGTGAACGGGGAAAACCCCGGGGGTTTACCCCACCTTAATCCA | |||||||||
gi|110360638|gb|EC923903.1|EC923903 WIN023.C21_C02 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clo CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): GAGCTTGAAAAGAAAGCTATCAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAACATGCAATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACTAAGAAGCTTGATAACAATGATGCCAATACAACAGCAGAAAAAGGTTCAGTCTCTGGTGCGGCCCTTTCTACACAATCTGCCAGTTCATCAGGCTCCGAACACCTGCCTACCAACTCTAGTCGAAATTTGGATTCCTCCAGTTTGCAGCAAGAAGAGAAAGGACGCACAATTCAAGATATGCTTGAAGCACACACTTACTCCAATAGCAACAGGAATGGCCATGGTCTATCATCAGCATACCATTCATCAAATGGCAGTGAGGGAGGTGACTGCTTTGGCCAACCAAGGGAAAACATGCAGCTGAACACGGCCCCTCATAGGGCTCTACCCATCAAATAAAGACCTATCGGTTAGGTGAAGCTGGAGGTGCAGTATCCACTTTGAGGAAGGAAACCCTCATGGTTACATGGCATTTCCCAGGCAATTCATTCTTGGCTTTGGTTACATGGCGTTTCTGGGGTGATACTAGGGATGGACATACATGGTTTGGCCTTTGCTGTCTCCATTCTAACCCTACCTCCATCTCTACTATTCACCCCTTCTGTATAAAAAGGAAAAAACCCAAAATCGTGGGATTAACAAGTAGAGATAGTGTGAATTTGGAGATTCTAAACAGTTAAAACATCTGAAGGTTTCCAATGTGTGATGACCTTTGTGTGAAACAGAACGTTTGCCTTTGCTTCTCCAACTGTGTTTCATGTTAACAATCTTAATTAATTTGTTTGTCTTTAAAAAAAAAAAAAAA | |||||||||
gi|110362334|gb|EC925861.1|EC925861 WIN0210.TB24.1_E09 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): AAGGCTGAGCTGAAAAGAAAGCTATCAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAACATGCAATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACTAAGAAGCTTGATAACAATGATGCCAATACAACAGCAGAAAAAGGTTCAGTCTCTGGTGCGGCCCTTTCTACACAATCTGCCAGTTCATCAGGCTCCGAACACCTGCCTACCAACTCTAGTCGAAATTTGGATTCCTCCAGTGTGCAGCAAGAAGAGAAAGGACGCACAATTCAAGATATGCTTGAAGCACACACTTACTCCAATGGCAACAGGAATGGCCATGGTCTATCATCAGCATACCATTCATCAAATGGCAGTGAGGGAGGTGACTGCTTTGGCCAACCAAGGGAAAACATGCAGCTGAACACGGCCCCTCATAGGGCTCTACCCATCAAATAAAAACCTATCGGTTAGGTGAAGCTGGAGGTGCAGTATCCACTTTGAGGACGGAAACCCTCATGGTTACATGGCATTTCCCAGGCAATTCATTCTTGGCTTTGGTTACATGGCGTTTCTGGGGTGATACTAGGGATGGAGATACATGGTTTGGCCTTTGCTGTCTCCATTCTAACCCTACCTCCATCTCTACTATTCACCCCTTCTGTATAAAAAGGCAAAAACCCGAAATCGTGGGATTAACAAGTAGAGATAGTGTGAATTTGGAGATTCTAAACAGTTAAAACATCTGAAGGTTTCCAATGTGTGATGACCTTTGTGTGAAACAGAACGTTTGCCTTTGCTTCTCCAATTGTGTTTCATGTTAACTATCTTAATTAATTGTTGT | |||||||||
gi|254914719|gb|GR906820.1|GR906820 79M_G04_014 ovule cDNA library of a seedless grape (Vitis vinifera var.Thomson seedless) Vit CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): ATCCACAATACTATACATGATCTTTTTCGGAAACCCCATTGTGTTGGACCCGGGAAATCGGCCATTACGGCCGGGCGGAGTACCCACCTTCGATGAGTGTCTTGCGTACATTGAAGATTATATGATACAGCACGGTCCATTTGACGGGCTCTTGGGTTTCTCGCAGGGGGCAATATTATCAGCTGCTCTACCAGGGCTACAACCTAAGGGTTTGGCCCTCACAAAGGTTCCTAAAATAAATTTTCTTATAATTATTGGTGGAGCAAAGCTGAAATCACCATCACTAGCTGAGAAAGCATATTCATCTACAATTCAGTGCCAATCTATCCACTTTTTAGGAGAGACTGACTTCTTAAGGCAGTATGGGATTGAACTCCTGGAGTCATTCGTAGACCCTTTGGTGATTCATCATCCCAAGGGCCACACAGTACCCAGACTTGATGAGAAGAGCTTGCAAATCATGCTTGGCTTCCTTGAAAGGATTCAAAAGATGCTGCCAGAGAAGGAAGAAGAAATGTGCTAAAATGGAGAATTTTTTTTTATTATTATTTTTATTTTTTTGGGCATGAAAAGATAAATTGTTCCTTTAGTCAATGCCTCTTCAATATTTATTTCCCTGTAATAAACATTCTAGTTTATGAAGGGGTTAATTTATTGCCCAGTAATAAAAATATGAATTTATGATGGGGGTTAATTGAAAAGGGATTAAAAGAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|110403058|gb|EC964155.1|EC964155 WIN087.C21_G15 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN087_G15 3', mRN CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): TCACAAGTTGATTGCAACCAATTGACTGCTCGCATTCCAATCACTGCCACCGAGATATACCATTGCGACTTACTAGCACCTGCTTATGGTACAAAGGCTATGATTCATCATCCTCAAATGATGGGAATGGCCCCTTCTCGAGTGCCATTGCCTGTACTAAATCCACAAGAAGAGGTTATTTTCATCAATCCAAAGCAGTATAATGGAATTATGAGGCGGAGGAAGCATCGCGCCAAGCTTGAAGCTCAAACCAACCCTGTCAAAGCTAGAAAGCCTTATCTCCATGAGTCTAGGCATCTCCATGCCTTGAAGAGGCCTCGTGGAGCTGGTGGACGCTTCCTCAACATGTCCAAGCTCCAAGAACCCAAGCCTTCTTCTCCCTCAACAGATGCTCTGATTGCAGGCTCAGCTCAGCCACCTTTCAATGGAAATACTGCATCAGAGTCTGAAGTTCATCAGCCAGAAAACAACAGAGAAGGGGCTTCCACCACCTCCTGCTCTGATGTCACTAGCGGCTCAAACAGTGATGACGTCTTTCTGCAGCCAGAATTCAGGTTCTCCACCTACCCTCCTCACATTGGCGGATCCATGAAAAGGAATGATTCTGGGAGCAATAACTTAGGTGGGTCTGGCCTCGGGTGACAGACGAGGCAGACAGTGGATGTGTCAGCAGCTTGTGTTCATCGTCCATCGAACGATCCGGCTGCTGGTGTCCCTTGGAAAGTCATCCTTGGCTGTGTTTTCTTCATTAGTTCATAGCTTTGTCAGCTGAATACAAGATACGGAGATTGTTACTAGCTGTTATTTCACTTTTTTTTTCCATTTTGTTTCTCTTCGGAAATACAAAAGTAG | |||||||||