| mature miRNA: CAGCCAAGGATGACTTGCCGG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110383364|gb|EC947732.1|EC947732 WIN0542.C21_I13 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): AGCACCTACCAGAGTCCCACTGCCCTTTGATATTGCAGAGGATGGACCTATTTTTGTCAATGCAAAACAGTATCATGGAATTCTCAGGAGGAGGCAGTCACGAGCAAAGATGGAGGCCCAGAACAAACTTGTCAAAGCCCGAAAGCCATATCTGCACGAGTCTCGGCATCTTCATGCCCTAAATAGGGTTAGAGGATCTGGTGGACGCTTCCTCAGCACGAAAAAGCTCCAAGAACCGGACTCAACTTCCAATGCTGGCTGTCATAGTGTATCTGGCTCTGGTCATTTTCACCAGAAGGGAGACACAACTGAGTATGAAGTCCATCAGTCTGATACTGGCAAATTTGTTGCTTCAACTACATCCAGCTCTGATGTCACCAGTGTCTCTAACAGTGATGTCCTTTTCAGGCAGCCGGAGCACAGGTTCTCAGGCATGTCTCCCCACATGGGTGGAGCCATGCAAGGTGGTGGCGGTGGGACTTATGGGCAATGGAGTCCTGCTCCTGGTTGTCCGGTGAGAAGTCGATAGGAACAAGATCGATGGAGTCACTGGTCTGGGCAATTCATCCTTGGCTTTGTTACTTTCGTTTCATGCGTGTTAAGAAGATAAACACATCAAACTTCATGGTGTAGTAGAAATACTCTGCCTTTCCCATTTCCAACTGCATACATTCTGGCTCTGTAAACATGGTTGAGAAGAGGCTATGCTTGAAACTCTCTGTTTGTGAACCATTGTTTTGTTTCTTCAAGACAATGTGAGATATTGGTTCACCGGTATTTTGTTTGTTGCTTACAGAAAGCAAACCCTGCCTTTTGTGCTAGTGTAGTGATGTTGATGCCAGTTTTTC | |||||||||
gi|110360638|gb|EC923903.1|EC923903 WIN023.C21_C02 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clo CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GAGCTTGAAAAGAAAGCTATCAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAACATGCAATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACTAAGAAGCTTGATAACAATGATGCCAATACAACAGCAGAAAAAGGTTCAGTCTCTGGTGCGGCCCTTTCTACACAATCTGCCAGTTCATCAGGCTCCGAACACCTGCCTACCAACTCTAGTCGAAATTTGGATTCCTCCAGTTTGCAGCAAGAAGAGAAAGGACGCACAATTCAAGATATGCTTGAAGCACACACTTACTCCAATAGCAACAGGAATGGCCATGGTCTATCATCAGCATACCATTCATCAAATGGCAGTGAGGGAGGTGACTGCTTTGGCCAACCAAGGGAAAACATGCAGCTGAACACGGCCCCTCATAGGGCTCTACCCATCAAATAAAGACCTATCGGTTAGGTGAAGCTGGAGGTGCAGTATCCACTTTGAGGAAGGAAACCCTCATGGTTACATGGCATTTCCCAGGCAATTCATTCTTGGCTTTGGTTACATGGCGTTTCTGGGGTGATACTAGGGATGGACATACATGGTTTGGCCTTTGCTGTCTCCATTCTAACCCTACCTCCATCTCTACTATTCACCCCTTCTGTATAAAAAGGAAAAAACCCAAAATCGTGGGATTAACAAGTAGAGATAGTGTGAATTTGGAGATTCTAAACAGTTAAAACATCTGAAGGTTTCCAATGTGTGATGACCTTTGTGTGAAACAGAACGTTTGCCTTTGCTTCTCCAACTGTGTTTCATGTTAACAATCTTAATTAATTTGTTTGTCTTTAAAAAAAAAAAAAAA | |||||||||
gi|110390014|gb|EC954897.1|EC954897 WIN0563.C21_B20 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GTTCGCATTCAAGAGAGTGCCCTTCGATTACTATGACTGGCCGATCGAAGCCCGGCGAGACATCCTCGGCTCCCCCTCAATCCACCATCTCTGCAAAAGCATCGTTCTTGTCAATACTCAAGCTCCATCCAATGTTACTGACTGTAGTGACCGCAACAATTCAAAGTATTATATTGTTGTTGTTCAGTATACTGCTAGATTCAATGCTGAAACTGTGAAGAATTTTCTGTATTCACTCAACAATGGCAAGATACCAAAGAAGAAATTCAACTTGAGGCTTGCTCCTGAGGAGTCATCACAGAAATTGACTGGATATGAGCACAATGGGGTGACATGTATTGGCATGAAAACCGACATTCCGGTGATTTTGGATGAAGCAATTGTAAAGCTTGATTCCAATTTCTTCTGGTTAGGAGGTGGGGAGATTGATCTGAAGCTGGGGATCAAGACTTCTGAATTCATTAACTTTGTTAAACCTTTCATTGTCAGCTGTAGTGGTATTTAATTTCCCCAAAGATCCACAACTCTTGGAATGGAACCGCTCGACTGAGACGATGGAATGGAATCTCTTAAACGTGATGATGTCAAGGAAGATGGCCTCATGGTGGACCTTGCTCCTTTTGGGGTCCAATTCTAGGATTTTGGTAATCATTAAAGCAGGAAATTTTGCTTTACATATATTTATTTTTAGTTAGTTTTTGGATGTTGAAAATTCATTCGAGAGTTTTGTAGTTTAATTGTTATATTCAACGACTTGCACGACAAAACGTAACGTGATAATTTCTTAAAAAA | |||||||||
gi|110362334|gb|EC925861.1|EC925861 WIN0210.TB24.1_E09 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): AAGGCTGAGCTGAAAAGAAAGCTATCAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAACATGCAATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACTAAGAAGCTTGATAACAATGATGCCAATACAACAGCAGAAAAAGGTTCAGTCTCTGGTGCGGCCCTTTCTACACAATCTGCCAGTTCATCAGGCTCCGAACACCTGCCTACCAACTCTAGTCGAAATTTGGATTCCTCCAGTGTGCAGCAAGAAGAGAAAGGACGCACAATTCAAGATATGCTTGAAGCACACACTTACTCCAATGGCAACAGGAATGGCCATGGTCTATCATCAGCATACCATTCATCAAATGGCAGTGAGGGAGGTGACTGCTTTGGCCAACCAAGGGAAAACATGCAGCTGAACACGGCCCCTCATAGGGCTCTACCCATCAAATAAAAACCTATCGGTTAGGTGAAGCTGGAGGTGCAGTATCCACTTTGAGGACGGAAACCCTCATGGTTACATGGCATTTCCCAGGCAATTCATTCTTGGCTTTGGTTACATGGCGTTTCTGGGGTGATACTAGGGATGGAGATACATGGTTTGGCCTTTGCTGTCTCCATTCTAACCCTACCTCCATCTCTACTATTCACCCCTTCTGTATAAAAAGGCAAAAACCCGAAATCGTGGGATTAACAAGTAGAGATAGTGTGAATTTGGAGATTCTAAACAGTTAAAACATCTGAAGGTTTCCAATGTGTGATGACCTTTGTGTGAAACAGAACGTTTGCCTTTGCTTCTCCAATTGTGTTTCATGTTAACTATCTTAATTAATTGTTGT | |||||||||
gi|110386028|gb|EC950599.1|EC950599 WIN0550.C21_B20 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GGACACTACCGACATGTGGATTTCGGAGGCATGAAGACCAACGGCAAGTCAATCGCCGTTCACACTCTCATCTTCGTCGCCATATTTGCAGTCCTCATCATGGCTCTTCATCTCCACATCTACACCGGCTGAACCGCCCCTCCTCCATATGTTAGGGTTTCTCTAGATCTGCGATTATCTTCTATTCTCTCTCTTATCTTTTTTTGTCCTAGGCTTTTGATTTTGTTTTTAGGTTTTCGCTTTGATGTAGCTGGTGATGTTTTGTTATCAAATATACGGATCGCAGATCTCTTCCTTTGAAATGTCGATTTTGAATCTTCGATTGCTGAGCTTGGAGCGTGAGCTGGTGGTGAAGGCTATCCACTGATCCGCTGAGGAGGTAGATCGGAGATGTGATGCCGGGGAATTGGATTACCCGACAAAACAAGGTGGCGAGATCTGAGTAGTCAGGAAAAGTGCAGTGCAGTTCAGTGCAGCGTAGCTTTTGCAATTGAATAGATTCCATCAACTCATCCTTGGTTGTCTTTTCTTCTTTAAAATGCTTTGACAAATTGCCTGATCTTTTTTGTAAAACTTTACTAAAAGCAGCAGGACAATCCCCATATCAATCTAAGAGTATGTTTGAAACTGATTTGAGAAAGGCTAAAAATGCCTCTTAAAATCATTATCAAACAGGTTTTAAGTCTGTATGGAAAAAATATGTAAAGATCAAAATTGTTATGACTTAATTATACAAATGATGCATGTGAAACCAAAAAAAAAAAAAAA | |||||||||
gi|110403058|gb|EC964155.1|EC964155 WIN087.C21_G15 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN087_G15 3', mRN CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): TCACAAGTTGATTGCAACCAATTGACTGCTCGCATTCCAATCACTGCCACCGAGATATACCATTGCGACTTACTAGCACCTGCTTATGGTACAAAGGCTATGATTCATCATCCTCAAATGATGGGAATGGCCCCTTCTCGAGTGCCATTGCCTGTACTAAATCCACAAGAAGAGGTTATTTTCATCAATCCAAAGCAGTATAATGGAATTATGAGGCGGAGGAAGCATCGCGCCAAGCTTGAAGCTCAAACCAACCCTGTCAAAGCTAGAAAGCCTTATCTCCATGAGTCTAGGCATCTCCATGCCTTGAAGAGGCCTCGTGGAGCTGGTGGACGCTTCCTCAACATGTCCAAGCTCCAAGAACCCAAGCCTTCTTCTCCCTCAACAGATGCTCTGATTGCAGGCTCAGCTCAGCCACCTTTCAATGGAAATACTGCATCAGAGTCTGAAGTTCATCAGCCAGAAAACAACAGAGAAGGGGCTTCCACCACCTCCTGCTCTGATGTCACTAGCGGCTCAAACAGTGATGACGTCTTTCTGCAGCCAGAATTCAGGTTCTCCACCTACCCTCCTCACATTGGCGGATCCATGAAAAGGAATGATTCTGGGAGCAATAACTTAGGTGGGTCTGGCCTCGGGTGACAGACGAGGCAGACAGTGGATGTGTCAGCAGCTTGTGTTCATCGTCCATCGAACGATCCGGCTGCTGGTGTCCCTTGGAAAGTCATCCTTGGCTGTGTTTTCTTCATTAGTTCATAGCTTTGTCAGCTGAATACAAGATACGGAGATTGTTACTAGCTGTTATTTCACTTTTTTTTTCCATTTTGTTTCTCTTCGGAAATACAAAAGTAG | |||||||||
gi|110697807|gb|EE075206.1|EE075206 C4B07815 Berries veraison stage (VvC4) Vitis vinifera cDNA clone C4B07815, mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CTCATTTACTTGGAATGCATGAAGCTAGAATGCCTTTACCCCTTGAGATGACACAAGATCCTGTTTATGTTAATCCAAAGCAGTACCATGGGATTTTGAGACGAAGACAGTCCCGTGCCAAAGCGGAACTTGAAAAAAAGTTGATAAAAGTCCGAAAGCCATATCTGCACGAATCCAGACACCAGCACGCCCTTAGAAGGGCAAGGAGTAGTGGAGGCCGTTTTGCCAAAAAGAATGCAGCTGAAGCTTCTAAACACGCTTCTGAAGAAAAGGTTACAGCTTTAGGCTCAGCCCCTTCACCACAATCTGTCAGTTCATCGGGTTCAGAGCGGTTGCCATCTGACTCTACTGAAACCTGGAATTCCTCCAGTAGACAGCAAGAAGCAAGAGGGCCTCAAGCACATGACACCCATGAACCACCCAAATATAAAAATGGCAGCGGCTACTACCAAAGTCCTGGTGACTCACAGACAACAAATCATTCACACACGAGTGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGAGCCCCCTGGGAAGCCCTTGGTCATCTGGTTTTTATCCAAGGCAAATGAAAATATTCTCGGCTTTTGTTTGCTGGGCGGCAAATCATTCTTGGCTTTGCTTTTGTGCCTGCAGTGAGGGGGGAAAGGGGTTACAAGGAAATGAGTGATGGGCATTGTAACTTATTTTGAN | |||||||||
gi|110384832|gb|EC949297.1|EC949297 WIN0546.C21_D12 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GAAAAAAGCCCACAGTAATTGGAGTGGATATGTGGGCTATGTCATAAGACAGGCCCAACATGGAATCCTTCCTTTCATGCTTAGTAATTTTTTTATAAAAAATTAAATTACACGGGTGAAATCTGGTTGGAAAAAATCGCCGATTTTTTTGAAAAAATCGCCGATTTATCGCGATTTTATCAGCAAAAAATCGCCGATTTTTTCAAAAAATCGCCGATATATCGCCGATTTTGCCGATTAATTGCCGATTTTTTTCCATCCACCTCCTTCTTCTCCGCGCGTGCCTCCACTCGCCGATGTTTCGCCGATTTTTCGGTTCTCCACCGATATTTCGCCGATATATCGGCGATTTTGCCGATTTTTGGCCGATTTTTCCGTCGATCGATAATCGGTGCCGATTATCGTTTCGATGCCGCCCGATAACCGATATTTCTCCGAAATATCGGCGACATTTTCCGATTTTTCAATCCATGGATCGGAGATGTGATGCCGGGGAATTGGATTACCCGACAAAACAAGGTGGCGAGATCTGAGTAGTCAGGAAAAGTGCAGTGCAGTTCAGTGCAGCGTAGCTTTTGCAATTGAATAGATTCCATCAACTCATCCTTGGTTGTCTTTTCTTCTTTAAAAAAAAAAAAAAA | |||||||||
gi|110398973|gb|EC965457.1|EC965457 WIN0818.C21_C23 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0818_C23 3', m CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGAGCCCCCTGGGAAGCCCTTGGTCATCTGGTTTTTATCCAAGGCAAATGAAAATATTCTCGGCTTTTGTTTGCTGGGCGGCAAATCATTCTTGGCTTTGCTTTTGTGCCTGCAGTGAGGGGGAAAAGGGGTTACAAGGAAATGAGTGATGGGCATTGTAGCTTATTTTGATATCTGATAGAACTTCACTCCATTCTTCCCATAATACTGTCTTCTGTACAAAAAAAGGTGGACGAACTCAAGTAGGATAAGTAGGAACAATCAATCTGTAGGGACATTCTA | |||||||||
gi|110412385|gb|EC978133.1|EC978133 WIN106.C21_N11 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GTCCTGCTGTCGCCGGGACTACTGTTCCAGTTACCGGGACACTACCGACATGTGGATTTCGGAGGCATGAAGACCAACGGCAAGTCAATCGCCGTTCACACTCTCATCTTCGTCGCCATATTTGCAGTCCTCATCATGGCTCTTCATCTCCACATCTACACCGGCTGAACCGCCCCTCCTCTATATGTTAGGGTTTCTCTAGATCTGCGATTATCTTCTATTCTCTCTCTTATCTTTTTTTGTCCTAGGCTTTTGATTTTGTTTTTAGGTTTTCGCTTTGATGTAGCTGGTGATGTTCAGTTATCAAATATACGGATCGCAGATCTCTTCCTTTGAAATGTCGATTTTGAATCTTCGATTGCTGAGCTTGGAGCGTGAGCTGGTGGTGAATAGGAGCACAAGTGGTGAAGGCTATCCACTGATCCGCTGAGGAGGTAGATCGGAGATGTGATGCCGGGGAATTGGATTACCCGACAAAACAAGGTGGCGAGATCTGAGTAGTCAGGAAAAGTGCAGTTCAGTGCAGCGTAGCTTTTGCAATTTCATAGATTCCATCAACTCATCCTTGGTTGTCTTTTCTTGTTTAAAATGCTTTGACAAATTGCCTGATCTTTTTTGTAAAACTTTACTAAAAGCAGCAGGACAATCCCCATATCATTATCAAACAGGTTTTAATTGTGTATGAAAAAAATATGTAAAGATCAAAATTGTTATGACTTAATGATACAAATGATGCATGTGAAAAAAAAAAAAAAAAAAAAAAA | |||||||||