| mature miRNA: CGAGTCAAGGATGACTTGCCG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110392843|gb|EC957345.1|EC957345 WIN062.C21_G21 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN062_G21 3', mRN CGAGTCAAGGATGACTTGCCG EST sequence (targeted fragment marked with yellow): ATTATTCTAGATTCCCCGTCTATTCCGAGTCGGATTCCATGTTACCCATTGCCTTCAAGCCCCTCGGTTTCTTCTTGGAAATCTTCTTCTCCCTGACCTCATATCGCTCTAGAGTCAGATCGCATAGCCACGCACCGGGGCTTACTAGATTGAGAGTGCGTTGAATAAACTTGGCCCGTTTCTTGGGTCTCTGGGGGAGTTTGGAGCCCTTAATGGCCATGAAATCTTCTTCCTTCTCTTTGTTGGTGAGGGCAATAACAAACTTAGGAGGCCAGACGGGCGGCACAGCCTCGCTGCCAGCCGACGAAGACCCTCCTCCTCCCTTCTTGCTGTCGTGGGCCGTCTCCGACGAGGCCGACTTATTATCATTGTTATGGTGGTGGTTGTTAGCGTTGTGATGATTACCTCTCCTGTCCTGGTCTCTTGCCGGAGAAGAGAACCCACGTACGCCGTTGCTTTGCCCTTTCATGGCACTTGAATTTTCTGAGTTCCTGAGAACGCGTTGTGGAGGCGGAGGCGGAGGTGGCTGAGGCGAAGATGGGCGGTGGCGGAGATTAAAATACCCGTTACTGGTGGCTGCAGCGGTGGTGGTGGGTTGATTCAGAGAGTCCTTATCAGCTCTAACCACTCGGCGGTCGACTCGGACCGTGGTCTTGTGAACCGGGGCCGAGTCGTCCTTGACTTGGATCTTCATACAACGGAGTCGCTTGCGGTTCCCCCACTGCAACACAAAGTCTGAAGCGGTTGATCTAGGCTCAGAGCTCGCTCTCAACAACGACCCATCATCTGC | |||||||||
gi|156731867|gb|EV235988.1|EV235988 VV_PEb23f06.g1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence CGAGTCAAGGATGACTTGCCG EST sequence (targeted fragment marked with yellow): AATGTAGGNNNCCAGGACTCGATGGGCGCAGCATAGCTTGCTCGAGTCTAGAGTCGACTGGGCCGAGGCGCCCTACATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCAAAACAAAATCCATCTTTTATTGGCTCGACTATGACTAAGAAAAATAAATAAGCATACATATCCTTGCATCTGCAAAATAATTACTCCGAAGCTCTGACAAAAGGGAAGTCAAAGATACAAGAGGGCAATCACCATTGTTCAAAATTTTCTATTTTGCAGGACCATTGCGTACTTCAGCAGAAGCTCCAGATGGGTTGAGCTCATCCCATGCCTCAATCCATGTGACCATGGCATCAGCCAGCTTGATAAAGTATTCATCAACTTTCCCTAGCTTTGCCCTAACTTGCTTGGAGAGTTCAATGTAGCATTTTTGAACAGTAGTGCATTCCTTCGGAAGAATAACAGACTGGAAAAATGGGATCAGCTCCTCCTGCCAGTAAATACCTTTGTACTCCTTTTTAAGGTTCACAAAAGGGTTGCTTGCTTTGCTGTGCCAGATGTAGGGCAGACCTGTCTTGATTCCCCGGCCGTAATGGCCGAATTCCCGGGTACCAACACAATGGCGCGCTTCCCGAGAAAAAAAAAAAAAGCTCGTCCAGATCTCGGAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTGTCCGCTCACAATTGCTAGAGTACTTTTCATTTTTTGCGCCTCGTTATCATCCAAAATACGCCATGAATATTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATAACTCTACCGATATCTTCGGCTTATGCCGACACCCTTGCGATGTAAAGCTAGAGCTAGCTTGAGTATTCTATAGTGGCACCTAAATAGCTTGGCGTAATCATGGTCATAGCTGTTTCTGTGTGAAATTGTTATCCGCTCCCAATCCACACAACATACGAGCCGGAAGCATAAAGGGTAAACCCGGGGTGCCTAATGAGTGAGCTAACTCCATTAATGGGTTGCGCTCCCTGGCCCGCTTCCCATCGGGAAACTTTCGGGCCACTGCATTATGGAACCGCCCAACGCCCGGGAAAAGGGGTTTGCCAATTGGGGGCTCTTCCGTTCCTCGCTAAGTAATCCTTGCCTCGGGCGTTGGG | |||||||||
gi|156726423|gb|EV230534.1|EV230534 VV_PEa12d06.g1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence CGAGTCAAGGATGACTTGCCG EST sequence (targeted fragment marked with yellow): AAGTGAGGGNGCCTTACTTATAAGCCCAGCATAGCTTGCTCGAGTCTAGAGTCGACTGGGCCGAGGCGGCCGTTATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCGACTTTGGGGCCCTTACAAAAAGAGTACATCCATCGTAAAACCAGATGTAACCTTCACATCTAATACATACAAAGAAATAGAATGAAACAATATGAACAAAGGAAAAACAAAAATACAATGAAACAATAAGAACAAAGGAAAAACAATCTTTTTAACAATTTCAACAGCAATCCCAAAGGGAGAGGAGGTAGACCAAAGATGAGAGGAATGAAAATATTGAGAATTTCTACTGCCACCTCCGCGATGTAGCCGATGGCCTTCACACGAGGGCGATTTTTTGTATCTTGGCTTGGCTGCATCTCTCGGCTTCTTGTCCCAGTCCCACGACCTTGTTTCTGATTACCAGACTCAAGGGGTGGTTTTTTATCTGGGTTTTGAGTTCTTGCTGGCAAGGCTTCCCTCTTCTTCCCCGTCTCATGACCTCGCTTCTGATTACCGGGGTTAGGATGCTGTACCGTATCTATTTTTTGAGGAGTCCTCTTCAAGGGTTGGCTACTCATCCTAGACTCGTGTCTTCGTTTCTTATTACATTGGTCATCATCTTTCTTCCCCATCTTGAGAGCCATATGCTTCATACATGACCAATGATAACAGTATTTTCCACAGCAGGAAGTGTAGTACCAACCGCTGAATCCATCTGAATTTTCCTTATTTCCCCATATTAGGCACTTTGAGGGGCTCTCCGCCTTAAGATCAACTACAATTTTCCCCGTCTCTGGTATCAGCATACTTCTTTGATGGGAAGCTTGGCACAACATGGGGTGGAAGTAATGGGGGTTTTTTACACATTTTGGCACTTGGAGAACCACCCCTTTCACATCATCCCCCCATGGGTCAAAAACTCCCTTTACCTTTTAGGGGTTTCTTTATAAAAAATGAAGTCCCACCGGGGTTTTGAACCGGCCGGAAATTGAACATGAGGGGAGGAATTTTCCCAGGGAAAATGAAATCTTAGCCTTTTTTTATAAAAAAGGGGAGTTTGGAAAGGGGTTATTCCTACTGGCTGGTGAAAAGGGGTCCTCCACTTCTTTCTCTTTATAAATTCCCGGGGG | |||||||||
gi|110422657|gb|EC988984.1|EC988984 WIN1135.C21_E08 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo CGAGTCAAGGATGACTTGCCG EST sequence (targeted fragment marked with yellow): AAATATCTAGGAGCATGGGCTATAGTGGAGGCAGCCATGTGATTGCAACTGGGCTTCTCACCTTGTGTACTCCATCTTTCCATATCAAACTTCCAAATTCTGGCGAAGACTGCCTAGACTTTGTGGTCAAGGTAATCTTGTACGACAGTTTCTGGTGTTTGCTGGTGAAATTCAGCATGGCTGGCTCGATTTTCACAGCAACCCCTTTGAATTGTGAAACTGCAACATGGTATTTGGACATGGGAGGCCCAACGTTGGTGACAGTTCTGTGAAGGGTCAATGTGGTAACTGACGCCTTGTCTGGGAAGACGGCTGAGATGGCTGGGTAATTCAAGTCCCCTCCACTGGCTAGGGTGTGTCGGCAGGACCTCTTTGACTTGCCGAACACCTTCAGCTGGATTGGGGTTAGCTTCTGTTTACAGAGGAATTCGAAGTAGTCCTGTGGTCCGATATCATATATCAAACCAGGATCAAGGGCTTTCAGTGGGTTTATGTGCCCAGCACCATGGTCGTACGGGGTTGAAGGCTGGCCGGTTGAGGCATCTCTCAAAGGGTTGCGAGTGTTGTCATGAACATAGGCTGTTGTCATCAATGCTGATCTTATCGCTGCTGGACTCCAATCCGGGTGCCTAGCCTTGAGCAATGCGGCAATACCACTTACATGGGGGCATGACATGGAAGTTCCGGACAGTATGTTGAACCTCACTTTCCGGTGATCGGTAGGCAAACTCGACGGCCCCATATCGCCGGACCAAGCAGCAAGGATGTTGAATCGTGGTGCCACCACATCCGGCTTCAGAATTT | |||||||||
gi|156736975|gb|EV241096.1|EV241096 VV_PEd0016a09.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence CGAGTCAAGGATGACTTGCCG EST sequence (targeted fragment marked with yellow): TTTTCTGCGGCCCCCGGTTTTTTTTTTTTTTTTTTTTTAGAAAATCAAGGAATTCTATTTTTCTTTTTTTTGTGACTTTGTGTCCCTTACAAAAAGAGTACATCCATCGTAAAACCAGATGTAACCTTCACATCTAATACATACAAAGAAATAGAATGAAACAATATGAACAAAGGAAAAACAAAAATACAATGAAACAATAAGAACAAAGGAAAAACAATCATTTTAACAATTTCAACAGCAATCCCAAAGGCAGAGGAGGTAGACCAAAGATGAGAGGAATGAAAATATTGAGAATTTCTACTGCCACCTCCGCGATGTAGCCGATGGCCTTCACACGAGGGCGATTTTTTGTATCTTGGCTTGGCTGCATCTCTCGGCTTCTTGTCCCAGTCCCACGACCTTGTTTCTGATTACCAGACTCAAGGCGTGGTTTTTTATCTGGGTTTTGAGTTCTTGCTGGCAAGGCTTCGCTCTTCTTCCCCGTCTCATGACCTCGCTTCTGATTACCGTGGTTAGGATGCTGTACCGTATCTATTTTTTGAGGAGTCCTCTTCAAGGCTTGGCTACTCATCCTAGACTCGTGTCTTCGTTTCTTATTACATTGGTCATCATCTTTCTTCCCCATCTTGAGAGCCATATGCTTCATACATGACCAATGATAACAGTATTTTCCACAGCGGGAAGTGTAGTACCAACCGCTGAATCCATCTGAATTTTCCTTATTTCCACATATTAGGCACTTTGAGGGGCTCTCCGCCTTAAGATCAACTACAATTTCCCCGTCTCTGGTATCAGCATACTTCTTGATTGGAAGCTTGGCACAACATGGGTGTAAGTAATGTGGTTTCTTACACATTTTGCACTTGTAGAACCACCCCTTCACATCATCCCCACATGCGTCACAAACTCCCTTAACTTTCTAGGGCTTCTTTATGAAATATTGAAGTCGCACCTGGGATTTAGTCCTGCTGAAATTTGACCATGATGGGAGGATTTCTCCCCAGGAGAATGA | |||||||||