| mature miRNA: CTAGATGACCAGCAACAAAAC species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|299827265|gb|GR390600.1|GR390600 FS-VVIN-lig1A_F08 Fruit set (FS) RDA subtracted library Vitis vinifera cDNA clone FS-VVIN-li CTAGATGACCAGCAACAAAAC EST sequence (targeted fragment marked with yellow): CTCTTGCCTCTATTGCTTTTATCCTTTTTTTATTATTAGTATATTTAGTTAATTATTAGTGGTTATAATATGAATTGTCGGTGCAAAGATAAATTGGAAACAAAATAGAACTCGCTATGGCGGTGTATATATATCTCGAAGTGCGAGTTTGACCGCGTTGTACAGAGTCACGCAGAGAACGCCCTTCATTTATTTTTTTATTTTTTTTTTGATTACGTCCCCTGCTTGTTTTTTATATTTTGTTTTGTGTTGTTTTGGGTAATATGATTGGGGTAATATATTTTTTTTCCGTGGGGAGGGTTTGCTCGTGTTGCCCCCTGTTTTTTTTGAATTATAAGATAAAAAGTGAGGTGCTATCAACTGTTGGGGGTCTTCCCTTTTGTTGTTCCCGGGGGGGGCGCTGTTTTTTTTGTTTATTGGAAAAATTGTTTTTCCGGGGGATTTCGAGGGGGGATCCCAATTTCGGGGGTGAGAAAAAGCCCCGGGGGAATTTTTATGCCCAGGGGGGTTCAACAAGGAATTTTTTAAGTGTTTTAACGCATAGTTGAAAGGAGAAGCCGCATAATATTAACAGAACTTTTTTACATTAATTTTCTTGCATATCATCCATCATTTGCTTGTCGACTAGGCTAAGTTTTGTATTTGGTCATCTAGCTGAGATACTAGTATTCTATTTGAGTTCTTGAGTTATCCTTTGGTAAGAGAAAATTAAAACAGCTTCTGCTTTTTGGGAACTGATCCTCCCTCGGATAGCACAGTTGCCTAATCGAATTCCCGCGGCCGCCATGGCGGCCGGGAGCATGCGACGTCGGGCCCAATTCGCCTCTATAGTGAGTCGTATACATCAA | |||||||||
gi|161719335|gb|FC064839.1|FC064839 sT7aVVM011B20080 VVM Vitis vinifera cDNA clone VVM011B20080 5' similar to emb_CAO71789.1 unn CTAGATGACCAGCAACAAAAC EST sequence (targeted fragment marked with yellow): GTTTCGGAACTGTCTCGAGGAGTTTCCCTGAGGTTTTGGTGTGTTTGGACTGCAGGAAACTTCGCAGGAAAGTTCTTCAACTGAGTTTGGAGTCTAGAGAGCATGAACTCTTCATCCACTCACTTTGTCACCTCGAGAAGGATGGGCATATACGAGCCACTCCACCAGATTAGCACATGGGGAGAAAGCTTCAAAACTAATGGTTGTCCAAATACATCAGCATCCACAATTGCAGAGTTGGAAGCCAAACTAGACAATCAGTCAGAGGACACTTCACATGGAACACCTGGACCTTCTGATAAGTATGACCAACAAGCTACTAAGCCTGTTGATAAGGTACAAAGACGTCTTGCACAAAACCGTGAGGCTGCTCGTAAAAGCCGTCTGAGGAAAAAGGCCTATGTTCAGGAGTTAGAATCTAGTAAGGTGAAACTGATGCAATTAGAGCAAGAACTCGAGCGTGCTAGACAACAGGGATTGTATATAGGTGGTGGGTTAGATGCTGGTCATCTAGGGTTCTCTGGAGCTGTAAACTCAGGAATTGCTGCATTTGAGATGGAGTATGGTCATTGCGTAGAAGAACACAGTAGTCAGATCTGTGAGCTGAGAACTGCTTTGCATGCTC | |||||||||
gi|110389697|gb|EC954557.1|EC954557 WIN0562.C21_B09 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone CTAGATGACCAGCAACAAAAC EST sequence (targeted fragment marked with yellow): GAGGGTCTAGTATGTGTTTTGCAGCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAACGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGATAATGCATCACATCACGGCTGTGTCTCCCCCCCCCCTCTCTCATCATGGGTGTGCGTGCACAAATAGTTATTGTTTACTCTGAATTGGAACCTTTTTTTTTTTAGTTTGATGATCCTTCTTTTGTCTTCTGATTTTGCCTGTCTGCATAGATGGTATGTCTTTCTCTCAAACGCTGCAAATGATGCTCACTTTTTCTGTGTGGCCCACTAAAACTGTCATCTGCTGATTCAACATTTATCACCTTTGAGGTTTGTTATGATTTCTTATGAAGATGGAAGATGTGTTTGTATTTGGACCATTGAAAATATTTTGTTAGAAGTTAAAGGATGAGGGTTAAAGCAGTTGGACACCTCGCCTCTGAATTGTACTTCGATTCTTCCCCCTAATGGAGGGTAACAGATATAGTAATTGAGTTGATCTAAATTAAACTGCAAAAAAA | |||||||||
gi|156734346|gb|EV238460.1|EV238460 VV_PEc08C10.r.ab1 Vitis vinifera cv. perlette LibC Vitis vinifera cDNA, mRNA sequence CTAGATGACCAGCAACAAAAC EST sequence (targeted fragment marked with yellow): CCATAGATCCGCGTGGCGCGCTCTGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGACGGAGGTGGCATCATGGGATCCAAATCTCAGGCTAAGACAAAAGCCAAGGAGAAACTCATAGCCAAGGAGGCTGCACAAAGAATGTCTTAAGTGTTTCAACGCATAGTAGAAGGAGAAGCGCATAATATAACAGAACTCTTCTACATAAGTTTCTTGCATATCATCCATCATTTTGCTTGTCGACTAGGCTAAGTTTTGTATTTGGTCATCTAGCTGAGATACTAGTATTCTATTTGAGTTCTTGAGTTATCCTTTGGTAAGAGAAAATTAAAACAGCTTCTGCTTTTTGGGAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCAAATTGTAAGCGTTAATATTTTGTTAAAATTCGCGTTAAATTTTTGTTAAATCAGCTCATTTTTTAACCAATAGGCCGAAATCGGCAAAATCCCTTATAAATCAAAAGAATAGACCGAGATAGGGTTGAGTGTTGTTCCAGTTTGGAACAAGAGTCCACTATTAAAGAACGTGGACTCCAACGTCAAAGGGCGAAAAACCGTCTATCAGGGCGATGGCCCACTACGTGAACCATCACCCTAATCAAGTTTTTTGGGGTCGAGGTGCCGTAAAGCACTAAATCGGAACCCNTAAGGGAGCCCCCGATTTAGAGCTTGACGGGGAAAGCCGGCGAACGTGGCGAGAAAGGAAGGGAAGAAAGCGAAAGGAGCGGGCGCTAGGGCGCTGGGCAGTGTACCGGTCACGCTGCGCGTAACAACACAACCGCCGCGCTTAATGCGCCGCTACAGGGCGCGTCAGGTGCCACTTTTCGGGGAATGTGCGCGGAACCCCTTATTGTT | |||||||||
gi|161717154|gb|FC064696.1|FC064696 sT7aVVM010L03006 VVM Vitis vinifera cDNA clone VVM010L03006 5' similar to emb_CAN62273.1 hyp CTAGATGACCAGCAACAAAAC EST sequence (targeted fragment marked with yellow): GTCTCGAGGAGTTTCCCTGAGGTTTTGGTGTGTTTGGACTGCAGGAAACTTCGCAGGAAAGTTCTTCAACTGAGTTTGGAGTCTAGAGAGCATGAACTCTTCATCCACTCACTTTGTCACCTCGAGAAGGATGGGCATATACGAGCCACTCCACCAGATTATCACGTGGGGAGAAAGCTTCAAAACTAATGGTTGTCCAAATACATCAGCATCCACAATTGCAGAGTTGGAAGCCAAACTAGACAATCAGTCAGAGGACACTTCACATGGAACACCTGGACCTTCTGATAAGTATGACCAAGAAGCTACTAAGCCTGTTGATAAGGTACAAAGACGTCTTGCACAAAACCGTGAGGCTGCTCGTAAAAGCCGTCTGAGGAAAAAGGCCTATGTTCAGGAGTTAGAATCTAGTAGGGTGAAACTGATGCAATTAGAGCAAGAACTCGAGCGTGCTACACAACAGGGATTGTATATAGGTGGTGGGTTAGATGCTGGTCATCTAGGGTTCTCTGGAGCTGTAAACTCAGCCCACACTAAGAATTCTGCAGGAATTGCTGCATTTGAGATGGAGTATGGTCATTGGGTAGAAGAACAAAGTAGTCAGATCTGTGAGCTGAGAACTGCTTTGCATGCTCATATAAGTGATGTAGAGCTCCGGATACTGGTGGAGACTGCCATGAACCACTATTTCAATCTCTGCGCATGAAAGCTAATGCT | |||||||||
gi|110428436|gb|EC994908.1|EC994908 WIN1151.C21_L08 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo CTAGATGACCAGCAACAAAAC EST sequence (targeted fragment marked with yellow): GCAAAAGTTTCTTGCATATCATCCATCATTTTGCTTGTCGACTAGGCTAAGTTTTGTATTTGGTCATCTAGCTGAGATACTAGTATCCTTTTTGAGTTCTTGAGTTATCCTTTGGTAGGAGAAAATTAAAACAACTTCTGCTTTTTGGAGAACTGATCTGCAGACTTGAGAAGTGATGCTTTGTTTTATTCACCCCTATGATTTGCTGTTGCTGTTGAAAGTTTTCTCCACATGAGTTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|156724406|gb|EV228517.1|EV228517 VV_PEa03c03.g2 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence CTAGATGACCAGCAACAAAAC EST sequence (targeted fragment marked with yellow): GGGAAAGNNGATTATGGGCNGGNNAAGGGTGCGNNATCGGGATGAAGTNATNTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNCNCTCTNTTTTATGAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNGNGCGCTTTTTTTAAAGAGGGGNNAGNNNNNAAAAAANAGANANAAAAGGGGGAGGAGAAGAGGAAGAGGAGAGCGGGAGAGAAAANGGAGAGGGAGAAAAGAAGAAGGGAAAGAAGAAGAGTACAAGAAGGAGGAGAGGCGAAAGGAGAGGGAGGGGAGGGAGAGGAGGAACGAGAGAGGGAGGGGGAGGAGGAAAAGGGAAAAAAAGGGGAGAGAAGGAAACGAGAAAAGAAAGAAGAGAAGCAGAGAAGAGAAAGNAGAAGAAGAGGAGAGAGGGAGGANAGAAGAAGGAGGAGAAAAAGGAAGGGAGCAGGAGAAGAAAGAAAGAAAAGGAGAAGAAGGGAGAAGAGAGAAGACAGAAAAGGAGCAAAAGAGGACGGAGGGGAGGAGAGAAACAGAGAAGAGAGGAGAGAGGGAAAGGAGGAGAGAGAGGAGAGAGAGAGAAAAGAAGAAAGGGGGGAGGAAGAGAAGGAGAGAGGAAGAAGGAGAAGGGCGAAACGGAGGAAGAGAAAGGGAGAAAAGAAGAAGAGAAGAAGAGGGAAGGAGGAGAGGGGGGAGAGGGAAAAGAGAGGAAAGAAAGAGAGGAGAGAAGGAGAGNAGAGGGAGAAAAGGAGGGAAGAAAGAGGAGAGAAGAGAGCGGAAGNGAAGGGAGGACAAGACGAAAACANGAGAGAAAGGAGAAAGGAGAACGGGAAGAGGAGAAAGAGAGAGAAAAGGGAGAGAGAAGGGAGGAAGNGGGAAGGAAAGAGAAGAGGGGAGGAGGGAAGGAGAGGAGGGAGAGAGAGGAAGAAGAAGAAGAGAAGAAGGAGAGAGGGGACGGAGAGAGAGAAAGGAAGAGGAAGAGAACGGAGGAGAAGAGAGGAGGAAAGAGGGAGGGAGAAAACAGGAAAGAGGAGAGAGAGAGAGGAGGAAAGGAGAAAGAGAGGACGGAGAGAAAAAGGGAAAGGGAGAGGAAAAAGAGAAAAACAGGGGAGGAGGAGGAGAGGAGAGAAGAGGGGGAAAGAGGAGAAGAGAGAAGGGGAGAGAAGAAGCGAAAGGAAGAGGAGGGAGGAGAAGGAGAGGAGAGGAGAGAGGAGGGAGGGAGAAAGAAAAAGGCGGGAGAAGAGGAGGAAGAAAGGGAGGAGAGAGGGAGAGGAGAAGGGAAGGAGAGAGGAGGGAGAAAGGAGAGCGGAAAAGAGGGAGGAGAAGAAAGGGAAGAAAGAGAAGAGGGAGAGAGGAAAGGAGAAGGGAGGAAAGAAAAAGGGGGCGAGAAGAAGAGAGAGAGGAAGAGAAAAGAGGGGAAGGAGGGAAAGGAAAGAAAGGAGANAGGAGAGGGAGGAGAGAAAGAAAGAGAAAAGAGAGAAGGGGAGGAAAGGAGAGGGGCAGGGAAAAGGGAGAGAAGGAAAGGAAAGGGGGAAAAGGAGAAGAGGGAAGAAGAGGGAGGGGAAAAAAAAAGGAGAAGGGGGAGAAATGGAGAGGAGAAGGGGAGAAGGACGAGAGGAGAAGGAGAAGGAGAGCGGGAGAAGAGGGAGGAGGAGAAAGAGGAAAGAGAAGAGAGGAGGATATGTTTTTGTGTATATTATGATGTAATGTATAATATTGTGTTGATAGTATGGTGGTTGAGTAGTACATTTGTATTTTTAGTTGTATTTTATTATTGTTTTATTATTGGTTATTTAGATGTTGTATATGTTGTATNACATATG | |||||||||
gi|110428250|gb|EC994716.1|EC994716 WIN1151.C21_C11 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo CTAGATGACCAGCAACAAAAC EST sequence (targeted fragment marked with yellow): TTTGAACCAGTTTACTAAAACCCTTGACAAGAACCTTGCTACAAATCTTTTTAAGATGTTGCTCAAATATAGACCTGAGGACAAGGCTGCCAAGAAGGAAAGACTTCTAAAAAGAGCACAAGCTGAAGCAGAGGGGAAAACTGCAGAGTCAAAGAAACCCATTGTTGTCAAATATGGGCTTAATCACATTACCTACCTCATTGAGCAGAACAAGGCTCAGTTGGTGGTAATTGCACATGATGTTGATCCAATTGAGCTTGTTGTTTGGCTACCAGCTTTGTGCCGGAAAATGGAGGTCCCTTATGCAATTGTGAAGGGCAAGTCTCGTCTTGGAGCGATTGTTCACAAGAAAACAGCCACAGCTTTGTGTCTTACATCAGTGAAGAATGAGGATAAGTTGGAATTCAGCAAGATTGTTGAGGCTGTTAAGGCCAACTTCAACGACAAGTATGATGAATACCGCAAGAGATGGGGAGGTGGCATCATGGGATCCAAATCTCAGGCTAAGACAAAAGCCAAGGAGAAACTCATAGCCAAGGAGGCTGCACAAAGAATGTCTTAAGTATTTCAACGCATAGTAGAAGGAGAAGCGCATAATATAACAGAACTCTTCTACAAAAGTTTCTTGCATATCATCCATCATTTTGCTTGTCGACTAGGCTAAGTTTTGTATTTGGTCATCTAGCTGAGATACTAGTATCCTATTTGAGTTCTTGAGTTATCCTTTGGTAGGAGAAAATTAAAACAACTTCTGCTTTTTGGAGAACTGATCTGCAGACTTGAGAAGTGATGCTTTGTTTTATTCACCCCTATGATTTGCTGTTGCTGTTGAAAGTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||