| mature miRNA: GAGCCAAGGATGACTTGCCGG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110390014|gb|EC954897.1|EC954897 WIN0563.C21_B20 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GTTCGCATTCAAGAGAGTGCCCTTCGATTACTATGACTGGCCGATCGAAGCCCGGCGAGACATCCTCGGCTCCCCCTCAATCCACCATCTCTGCAAAAGCATCGTTCTTGTCAATACTCAAGCTCCATCCAATGTTACTGACTGTAGTGACCGCAACAATTCAAAGTATTATATTGTTGTTGTTCAGTATACTGCTAGATTCAATGCTGAAACTGTGAAGAATTTTCTGTATTCACTCAACAATGGCAAGATACCAAAGAAGAAATTCAACTTGAGGCTTGCTCCTGAGGAGTCATCACAGAAATTGACTGGATATGAGCACAATGGGGTGACATGTATTGGCATGAAAACCGACATTCCGGTGATTTTGGATGAAGCAATTGTAAAGCTTGATTCCAATTTCTTCTGGTTAGGAGGTGGGGAGATTGATCTGAAGCTGGGGATCAAGACTTCTGAATTCATTAACTTTGTTAAACCTTTCATTGTCAGCTGTAGTGGTATTTAATTTCCCCAAAGATCCACAACTCTTGGAATGGAACCGCTCGACTGAGACGATGGAATGGAATCTCTTAAACGTGATGATGTCAAGGAAGATGGCCTCATGGTGGACCTTGCTCCTTTTGGGGTCCAATTCTAGGATTTTGGTAATCATTAAAGCAGGAAATTTTGCTTTACATATATTTATTTTTAGTTAGTTTTTGGATGTTGAAAATTCATTCGAGAGTTTTGTAGTTTAATTGTTATATTCAACGACTTGCACGACAAAACGTAACGTGATAATTTCTTAAAAAA | |||||||||
gi|161718741|gb|FC066633.1|FC066633 sT7aVVM016G09041 VVM Vitis vinifera cDNA clone VVM016G09041 5' similar to emb_CAO42344.1 unn GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): TTCCATGGCTTCTAGAATGGGGCAACCGAGAGCTCAAGTCCAGACACCTGCTTCAAAGCTGGCAGCAGGTGATGGTGTCCTTGCAAACCAGCCCATGAATATATCACCTTGCTCTGGTCTCTCAAGCCCCATATCTGTTTCTTCACATCCTGTTGCTCAGTCTGGGAGTGGATCTACTAGCACCGAGGAAGTGTTGGCTGCTAAAACCACAGGGGTTTCTGCCACTCCTGTTACCAAATTGGATTCCCCTAAAATGCTCTCTGTTGCTGCAACACCTATGATGCCATCAGCTGTTCCTCAAGCTCGCAAAGCATCCTTGGCTCGGTTTTTGGAGAAGCGCAAGGAGAGGGTGATGAGCACAGCGCCATACAATATCAGCAAGAAATCCCCTGAATGTGCCACCCCAGGATCTAATGGCATGAGTTACACAGCGAGTTCTGGTGCAGGTGCAAGTGCTGGTGCTGGTGCTGGTGCTCTTTCAGCTAACAAGGAGTAGCCATAATGTCTGAGGCCAAATTAGAACAACGAATTTATTGCAAATTTCTGTAGTTAAATTATAGAAGTCGGAAATTCCAATTACTCCACTGTTTTGTTGTAATCCGTAATCCCTGCTTGTTTGACTCTAAATCTTGACTAATATTTTCTTAATAAAAAAAAAAAAAAAAAA | |||||||||
gi|110697807|gb|EE075206.1|EE075206 C4B07815 Berries veraison stage (VvC4) Vitis vinifera cDNA clone C4B07815, mRNA sequence GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CTCATTTACTTGGAATGCATGAAGCTAGAATGCCTTTACCCCTTGAGATGACACAAGATCCTGTTTATGTTAATCCAAAGCAGTACCATGGGATTTTGAGACGAAGACAGTCCCGTGCCAAAGCGGAACTTGAAAAAAAGTTGATAAAAGTCCGAAAGCCATATCTGCACGAATCCAGACACCAGCACGCCCTTAGAAGGGCAAGGAGTAGTGGAGGCCGTTTTGCCAAAAAGAATGCAGCTGAAGCTTCTAAACACGCTTCTGAAGAAAAGGTTACAGCTTTAGGCTCAGCCCCTTCACCACAATCTGTCAGTTCATCGGGTTCAGAGCGGTTGCCATCTGACTCTACTGAAACCTGGAATTCCTCCAGTAGACAGCAAGAAGCAAGAGGGCCTCAAGCACATGACACCCATGAACCACCCAAATATAAAAATGGCAGCGGCTACTACCAAAGTCCTGGTGACTCACAGACAACAAATCATTCACACACGAGTGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGAGCCCCCTGGGAAGCCCTTGGTCATCTGGTTTTTATCCAAGGCAAATGAAAATATTCTCGGCTTTTGTTTGCTGGGCGGCAAATCATTCTTGGCTTTGCTTTTGTGCCTGCAGTGAGGGGGGAAAGGGGTTACAAGGAAATGAGTGATGGGCATTGTAACTTATTTTGAN | |||||||||
gi|110699720|gb|EE076964.1|EE076964 S1G07336 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G07336, mRNA GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CAAAAAGGTTTTCCCTGATTCCCTTGTGACTTCTGGATTTGACCCAAGTAACAAATGCCCAGCTGTGTGACCCGCAGAAAGCAGTCAATCCCGATAGGCAAGGTGGAAGTTTTGCAGTGACAGCTTATCCTGTGCAACATGATTCACATTTAATGAATCATCATCCTCATGATGTCAAGATGTTTCCAGTCTCAAACCAAACGATTTCAGTTTCCATGGGCAACCCCTTTTTCAAGACCCATTTTGCTGCAGCTGGTCAGAACATGGTTGGTGCTGCCCTGAAGCAACAATTACTTGGAGGAATTCCTGTTTCAGCTCCACATGGAATTCTGCCCTCTGCTGGTTCTTTTGCTGGAATCACTGAACCATGGAATAATTTTAAGACATCTGGATCTCCTACCCAATTGACCATCTTTTATGCTGGTACAGTGAATGTCTATGATGATATCTCGCCTGAGAAGGCTCAGGCTATCATGTTCTTGGCTGGGAATGGGGCTTCCATGGCTTCTAGAATGGGGCAACCGAGAGCTCAAGTCCAGACACCTGCTTCAAAGCTGGCAGCAGGTGATGGTGTCCTTGCAAACCAGCCCATGAATATATCACCTTGCTCTGGTCTCTCAAGCCCCATATCTGTTTCTTCACATCCTGTTGCTCAGTCTGGGAGTGGATCTACTAGCACCGAGGAAGTGTTGGCTGCTAAAACACAGGGGTTTCTGCCACTCCTGTTACCAAATTGGATTCCCCTAAAATGCTCTCTGTTGCTGCAACACCTATGATGCCATCAGCTGGTCCTCAAGCTCGCAAAGCATCCTTGGCTCGGTTTTTGGAAAGCGCAGGA | |||||||||
gi|110403058|gb|EC964155.1|EC964155 WIN087.C21_G15 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN087_G15 3', mRN GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): TCACAAGTTGATTGCAACCAATTGACTGCTCGCATTCCAATCACTGCCACCGAGATATACCATTGCGACTTACTAGCACCTGCTTATGGTACAAAGGCTATGATTCATCATCCTCAAATGATGGGAATGGCCCCTTCTCGAGTGCCATTGCCTGTACTAAATCCACAAGAAGAGGTTATTTTCATCAATCCAAAGCAGTATAATGGAATTATGAGGCGGAGGAAGCATCGCGCCAAGCTTGAAGCTCAAACCAACCCTGTCAAAGCTAGAAAGCCTTATCTCCATGAGTCTAGGCATCTCCATGCCTTGAAGAGGCCTCGTGGAGCTGGTGGACGCTTCCTCAACATGTCCAAGCTCCAAGAACCCAAGCCTTCTTCTCCCTCAACAGATGCTCTGATTGCAGGCTCAGCTCAGCCACCTTTCAATGGAAATACTGCATCAGAGTCTGAAGTTCATCAGCCAGAAAACAACAGAGAAGGGGCTTCCACCACCTCCTGCTCTGATGTCACTAGCGGCTCAAACAGTGATGACGTCTTTCTGCAGCCAGAATTCAGGTTCTCCACCTACCCTCCTCACATTGGCGGATCCATGAAAAGGAATGATTCTGGGAGCAATAACTTAGGTGGGTCTGGCCTCGGGTGACAGACGAGGCAGACAGTGGATGTGTCAGCAGCTTGTGTTCATCGTCCATCGAACGATCCGGCTGCTGGTGTCCCTTGGAAAGTCATCCTTGGCTGTGTTTTCTTCATTAGTTCATAGCTTTGTCAGCTGAATACAAGATACGGAGATTGTTACTAGCTGTTATTTCACTTTTTTTTTCCATTTTGTTTCTCTTCGGAAATACAAAAGTAG | |||||||||
gi|110383364|gb|EC947732.1|EC947732 WIN0542.C21_I13 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): AGCACCTACCAGAGTCCCACTGCCCTTTGATATTGCAGAGGATGGACCTATTTTTGTCAATGCAAAACAGTATCATGGAATTCTCAGGAGGAGGCAGTCACGAGCAAAGATGGAGGCCCAGAACAAACTTGTCAAAGCCCGAAAGCCATATCTGCACGAGTCTCGGCATCTTCATGCCCTAAATAGGGTTAGAGGATCTGGTGGACGCTTCCTCAGCACGAAAAAGCTCCAAGAACCGGACTCAACTTCCAATGCTGGCTGTCATAGTGTATCTGGCTCTGGTCATTTTCACCAGAAGGGAGACACAACTGAGTATGAAGTCCATCAGTCTGATACTGGCAAATTTGTTGCTTCAACTACATCCAGCTCTGATGTCACCAGTGTCTCTAACAGTGATGTCCTTTTCAGGCAGCCGGAGCACAGGTTCTCAGGCATGTCTCCCCACATGGGTGGAGCCATGCAAGGTGGTGGCGGTGGGACTTATGGGCAATGGAGTCCTGCTCCTGGTTGTCCGGTGAGAAGTCGATAGGAACAAGATCGATGGAGTCACTGGTCTGGGCAATTCATCCTTGGCTTTGTTACTTTCGTTTCATGCGTGTTAAGAAGATAAACACATCAAACTTCATGGTGTAGTAGAAATACTCTGCCTTTCCCATTTCCAACTGCATACATTCTGGCTCTGTAAACATGGTTGAGAAGAGGCTATGCTTGAAACTCTCTGTTTGTGAACCATTGTTTTGTTTCTTCAAGACAATGTGAGATATTGGTTCACCGGTATTTTGTTTGTTGCTTACAGAAAGCAAACCCTGCCTTTTGTGCTAGTGTAGTGATGTTGATGCCAGTTTTTC | |||||||||
gi|110360638|gb|EC923903.1|EC923903 WIN023.C21_C02 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clo GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GAGCTTGAAAAGAAAGCTATCAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAACATGCAATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACTAAGAAGCTTGATAACAATGATGCCAATACAACAGCAGAAAAAGGTTCAGTCTCTGGTGCGGCCCTTTCTACACAATCTGCCAGTTCATCAGGCTCCGAACACCTGCCTACCAACTCTAGTCGAAATTTGGATTCCTCCAGTTTGCAGCAAGAAGAGAAAGGACGCACAATTCAAGATATGCTTGAAGCACACACTTACTCCAATAGCAACAGGAATGGCCATGGTCTATCATCAGCATACCATTCATCAAATGGCAGTGAGGGAGGTGACTGCTTTGGCCAACCAAGGGAAAACATGCAGCTGAACACGGCCCCTCATAGGGCTCTACCCATCAAATAAAGACCTATCGGTTAGGTGAAGCTGGAGGTGCAGTATCCACTTTGAGGAAGGAAACCCTCATGGTTACATGGCATTTCCCAGGCAATTCATTCTTGGCTTTGGTTACATGGCGTTTCTGGGGTGATACTAGGGATGGACATACATGGTTTGGCCTTTGCTGTCTCCATTCTAACCCTACCTCCATCTCTACTATTCACCCCTTCTGTATAAAAAGGAAAAAACCCAAAATCGTGGGATTAACAAGTAGAGATAGTGTGAATTTGGAGATTCTAAACAGTTAAAACATCTGAAGGTTTCCAATGTGTGATGACCTTTGTGTGAAACAGAACGTTTGCCTTTGCTTCTCCAACTGTGTTTCATGTTAACAATCTTAATTAATTTGTTTGTCTTTAAAAAAAAAAAAAAA | |||||||||
gi|110362334|gb|EC925861.1|EC925861 WIN0210.TB24.1_E09 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): AAGGCTGAGCTGAAAAGAAAGCTATCAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAACATGCAATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACTAAGAAGCTTGATAACAATGATGCCAATACAACAGCAGAAAAAGGTTCAGTCTCTGGTGCGGCCCTTTCTACACAATCTGCCAGTTCATCAGGCTCCGAACACCTGCCTACCAACTCTAGTCGAAATTTGGATTCCTCCAGTGTGCAGCAAGAAGAGAAAGGACGCACAATTCAAGATATGCTTGAAGCACACACTTACTCCAATGGCAACAGGAATGGCCATGGTCTATCATCAGCATACCATTCATCAAATGGCAGTGAGGGAGGTGACTGCTTTGGCCAACCAAGGGAAAACATGCAGCTGAACACGGCCCCTCATAGGGCTCTACCCATCAAATAAAAACCTATCGGTTAGGTGAAGCTGGAGGTGCAGTATCCACTTTGAGGACGGAAACCCTCATGGTTACATGGCATTTCCCAGGCAATTCATTCTTGGCTTTGGTTACATGGCGTTTCTGGGGTGATACTAGGGATGGAGATACATGGTTTGGCCTTTGCTGTCTCCATTCTAACCCTACCTCCATCTCTACTATTCACCCCTTCTGTATAAAAAGGCAAAAACCCGAAATCGTGGGATTAACAAGTAGAGATAGTGTGAATTTGGAGATTCTAAACAGTTAAAACATCTGAAGGTTTCCAATGTGTGATGACCTTTGTGTGAAACAGAACGTTTGCCTTTGCTTCTCCAATTGTGTTTCATGTTAACTATCTTAATTAATTGTTGT | |||||||||
gi|110398973|gb|EC965457.1|EC965457 WIN0818.C21_C23 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0818_C23 3', m GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GGAGAGAGGGGAGGAAGACCAGCAATGGAAAAGCTTCTCTGCTGACCAGGGTTCTCAGAGGCCACATGCCTTCCAGTGAGCCCCCTGGGAAGCCCTTGGTCATCTGGTTTTTATCCAAGGCAAATGAAAATATTCTCGGCTTTTGTTTGCTGGGCGGCAAATCATTCTTGGCTTTGCTTTTGTGCCTGCAGTGAGGGGGAAAAGGGGTTACAAGGAAATGAGTGATGGGCATTGTAGCTTATTTTGATATCTGATAGAACTTCACTCCATTCTTCCCATAATACTGTCTTCTGTACAAAAAAAGGTGGACGAACTCAAGTAGGATAAGTAGGAACAATCAATCTGTAGGGACATTCTA | |||||||||
gi|110719976|gb|EE095552.1|EE095552 S8B02141 Fruits Veraison (VvS8) Vitis vinifera cDNA clone S8B02141, mRNA sequence GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GGAGGAATTCCTGTTTCAGCTCCACATGGAATTCTGCCCTCTGCTGGTTCTTTTGCTGGAATCACTGAACCATGGAATAATTTTAAGACATCTGGATCTCCTACCCAATTGACCATCTTTTATGCTGGTACAGTGAATGTCTATGATGATATCTCGCCTGAGAAGGCTCAGGCTATCATGTTCTTGGCTGGGAATGGGGCTTCCATGGCTTCTAGAATGGGGCAACCGAGAGCTCAAGTCCAGACACCTGCTTCAAAGCTGGCAGCAGGTGATGGTGTCCTTGCAAACCAGCCCATGAATATATCACCTTGCTCTGGTCTCTCAAGCCCCATATCTGTTTCTTCACATCCTGTTGCTCAGTCTGGGAGTGGATCTACTAGCACCGAGGAAGTGTTGGCTGCTAAAACCACAGGGGTTTCTGCCACTCCTGTTACCAAATTGGATTCCCCTAAAATGCTCTCTGTTGCTGCAACACCTATGATGCCATCANCTGTTCCTCAAGCTCGCAAAGCATCCTTGGCTCGGTTTTTGGAAAAACGCAAGGAGAGGGTGATGANCACAACCCCATACAATATCAGCAAGAAATCCCCTGAATGTGCCCACCACAAATACTATGGCATGAGTTACACAGCCAGTTCTGGTGCAAGTAGCAATACTTGGTGAAGGATCACATTCACCTAACACGGAGAAACCTGAATTGATGAGGCATATGTTAAAAGTATAATTATATTGGAAATTCAGNAAATAAAATATACAAAAACGAAATTCCAA | |||||||||