| mature miRNA: GGAATCTTGATGATGCTGCAG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110423614|gb|EC989961.1|EC989961 WIN1138.C21_C14 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo GGAATCTTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): ATTAAATTACGAGCAGAGTTTGTACATCAGGTTAACTCTTGCTCCATTCCTACTCTTGCATAAGGCTTCTGGAACTATTTCTATTTGAGGGGGCAAAGTACATCTTCTGGGTTGTTCCACAAATATTAAAGCTCATTCTCACGTCTATGAGCTCCCAAACGACTCTTTTACCGCTGTGTTCTTCCCATTCGCTACTCCTTGAACCTCTTAGGACGTGAATTGTCATATCCTGAGCGGGGGAAGTATGGTTGGCGTCTAGGAGCTCCACTCTTATAGCTGTCCGCTCCCATTTCTGGCATCCTGCTGCTCCTTTCTTGTGCATGACTTCTAGTGTTTCGGAAAAAGCCATCCTTGTCCCAACTTACCTCATAATCAGCCTTCAAACGAGACCCTTGCTTCTGCAATGAACGACCACACAACACCTTTAGAGCATTATAGAAGTCCCTGTATCTCTCAAACTGAACCACAATTTTACAGTGGAGGCCTGAAACTATGTCACCATCATCCTCATCTTCTTTGTCACCTAGATCATTGTCCTCAGCAACATTAAGATTCCTTATTTTTCCAAAAGTGGAAAAAATAGTATGTGTAACCAACATGGACGGCTTCGATGAAACCCGTGGATGATATGGTGTGAACCTAGGAGCACAAGACAAGATTGAGTGTAAGAGAGCAAACAAGTGTAGAAGGGGGAATCCATTGTACTTAAGAGGTCCAATGGTTTGGACTACTTTAGAATCATGTGTTTGATATGGCACACATAATTTGAGCACCAAGTGTGGTGAAGCATTTGTAAACATCTTCTATGAAACATATATTTTATTGACAAGCAGAAATATTTTGAAGGTATTTAAAAAAAAAAAAAAAAAAA | |||||||||
gi|156725742|gb|EV229853.1|EV229853 VV_PEa08c01.g1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence GGAATCTTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TTGTGGGAANGAAGGACTTATGCGGCGCATCATAAGCTTGCTCGAGTCTAGAGTCGACTGGGCCGAGGCGCCTATATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCTAGCATCACCCATAAATGATATTGCAATGTCAAAGAGTTCAAATTACACAGTGCACCTCAATGGGAACCACCCTTTGCTTGAGAGAAGACTGACATTCTGCCACCCTCCAAGGGGGGGGACATTCTTATTTCGTTTCTTGCATGTCATCCTCAGTTTTCCAAACCACATCCTCAAGGCAGGTCGAAAGATTTTTGTAAAACTTATGGAACTCCAAAGTATCTCCCTTTGCTTTTCGAACCTCAACCATATGAAGAGAAGGGGCCACTTGAAATACCTCTGTAGCCACATTAAGGTTCCCCTTTCTCCCAGCTTTCATATTTTCAAGCCTCATCTTATAGTTTTTCTTGGGAACATCAAACCCAAGAGGCTTCACAGCTTCTTCAATCTTATGAATTATCTCATTGGCAGGGCATTTTGACGTGAACCTCGTTTCTCTCTTGAATCCCTGTTCTATATCAAACAAATTCCCAAGGTTGAGCCCTTTTGACATGGAAATTAATTCAAATGCATTCATTGCTGCTGGTTGTTCCTCCCCCGGCCGTAATGGCCGAATTCCCGGGTACCAACACAATGGCGCGCTTCCCGAGAAAAAAAAAAAAAGCTCGTCCAGATCTCGGAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTGTCCGCTCACAATTGCTAAAGTACTTTTCATTTTTTGCGCCCCCGTATCATCCCAAATTACCCCTTGAATATTTCCACCGAAAAAACCACGGGTAAATCCCTTCCCGGGGGGAATCTGCCCAATAAAAACCTCCACCGGATATCTTCGGGCTTTTTGCCCAAACCCCCTTGCCGATGGAAAAACTAAAAAAACTAACCTTGAGATATTTCTTAAAAGCGCTCCCCTAACAATATGCTTTGGGCGAAAAATCCTGGGCTCAAAAGGCCGTTTTCCTCGTGGGGGAAAAATATGTTTTACCCCCCCCCCTCAAATATCTTCCCCACAAAAAACTATTTAGAACCCGTGAAAAATTATATAAGAAGTGTTTAAA | |||||||||
gi|110383253|gb|EC947612.1|EC947612 WIN0542.C21_C21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone GGAATCTTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): GGCATATGACAAAGCTGCTATCCGATACAATGGAAGGGAAGCGGTCACCAACTTTGTGCCAAGTACCTATGGAGAAGGGGCAATCTTAGAGGCCAATGACAGAAGCAGTGGGCACAATCTTGATTTGAACCTTGGGCTTTCTTTCCCTCCCGATGGTCCTAGGGGAAATGACGCAGTTGGGAGGAGATCCATGGTTGAGGGCTCCACTTACACACTAGTTGGTGGACAACCCCGCCATAGTCTAACCACAGTATCCAAGCACCTTCCCATGATATCCGGCATATGCACTAGTTTCTTACCAATTCACGAGGAAACAGCCCTGGAGAAAAGGTTGGAAGGGGTTTCTTCACCAAGATTCTCAAACTGGGCAAGGCAAGTGTATGGCCATGGTGTCAATATCCCAATCCCACTGTTGTCTACTGCAGCATCATCAGGATTCCCTTCTTGCTCCACCATTGGTCCCTCTGCAACTCTTCCACTATTAAATCCCAGGAACATTAATCCTGCCCTGCAGCCTCCTCCACAAATCTCCCCACCAACCACATCCACCACCAACAGTACAAGTTGCTTCTACAATTTTGGGAGCTCAAATCAACAGATGCAGTTTTGATAATTTTTTTCCCCTCTTTCTGCTTAGGAAGTGACCCTGCTGGAAAGCAAAACCAATTAGAGAGTCGTTTCTGTGCTTGTTTTCTGTTTAATATGAAGCCATGTAAACTGATCATAACAGTGTACCTGGTACTTCTACTTGAAGCACTCCATTTCGTTTCAAAAAAAAAAAAAAA | |||||||||
gi|110420206|gb|EC986471.1|EC986471 WIN1127.C21_M21 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo GGAATCTTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TTGAAACGAGCTTTCTTTGGTTTGAGAGCTTTTGCAGGCTCATCAAGATTACCCGACTCTGGTCCCTTCTTTTTGCCTGGTATTACTGTCAACTGAGTGTTGCCAATTGATTTCTCACCAACTCCATCTGTATTTGCCCGGATTGCTAAGAGAGCAGTTCTAGCAGCTTTGATCTCTGCTTCTTTCTTTGTTCTTGCTGCAGCTCCAATATAACGAATCCCCCCAATCTCAACGGTACAAGAAAAAGAGGCTGCTCTACCTGGTGATTCATCTTTCTGGCATACATACATTGGAATTGCATAGTTCATCTTCTGTGCATATTCTTGGAGCAGGTTTTTGCATAAGCCTGTTTCATGCACAGGTTGAGAAATGCATTCCTTCATGTTCCCAGATTTAGCTAATTCCACAAGAGCAACTTCAGCAGCTGACTGCTCTGCTGCCTTGCGATTGGAAAATCCAGGTAGAGAATCATACCTGACATCATTCACTATCACTGTGGACTTAAAGGAAGGCACATGGGGAGGACCTTCCTTGATGGTATCGTATAAAGGCGTCGGAAGTCCCACTTTTTGTGCATACTCTTGTAATCGGCTTTTGAATACATAGCAATTTGAAACACCTGCGAAACCATCATTGCTGGACATTTTTGGCGGTTGTACTGAAAGGACGCTGTTTGGTTGCAGATAAATGGCGAGAGAAAATGAATCGGTGGGAAATCGCCACTCCGCTCAATACGCTGTGGATTGAGAAGAAGCGTTTCAATAAACCAAAAGACGAGAGATTTTTTATATGAATGGAAACAGTAATCTGGAAGCTCAGAAGCGAAAGAGTCCAGCAGTGGAAGTAGTAGTGGGGAATTGTTTTGGCTGTATTTTGATGGAAGATCTCACCACCACCGGCCACGATGGAGGTGGGGAATC | |||||||||
gi|83275839|gb|DV939847.1|DV939847 CSECS171G02_POSu0038 CabSau Berry Postveraison Stage 38 (POSu0038) Vitis vinifera cDNA clone GGAATCTTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): CTCAGCTCACCAAATTATCAGATTCAGTTTNCAAGCAGCAGTAACGGAGGCCGAATTGCTGTCAACGGAGGAGATCTCTCTCTGGCCACAAACCATCAACAATGGCAATCCGGTCCCCCACAATTGTTTGCAACTGNTGCAGCATCATCAGGATTCCCACCGCAGATGATTAGACCCAACCAACAATGGCCGCAGAAAAATGGGTTCCACTCTCTCATCAGACCCTCCTGACCCATACAAACAATTCTTCTTCTTTTTTTTTCTTTCCAATCTTTTTTCTCTTTTCTGCCTCAGCCATCACCTCCCATTTTCCATTCTTTTTCAAGCCCCACCATACCATGTAAAAAGAAAGGAAATCAGTGTTGTGTACGTGGCTGTCTGTCTTCTACCTCTCAAAACCTCCTTTACAGAGACAAGAACAAAACCAAGGAGGTTTGAGGGGTGGTGTTGGGGGATATGAAGAGGAAGGATTCCTTGTCTCTGGGGAAATGTGGGTCGTCGGTCAAACTAACAAAGGAACTAAATCTTCAACTAGATATTCTGGCTTCTGACTAAAACTACTGCTGATCTGTTTATATGTATTGATGATGATTTGTTTTGCTTAAAAAAAAAAAAAAAAA | |||||||||
gi|110391992|gb|EC957091.1|EC957091 WIN061.C21_K23 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_K23 3', mRN GGAATCTTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TTCCCTCTTGTCCCTCCTTTAGTCCTTTGCTCAGATACTATTAGCTTTTCTCTTCACATTCTCTCATCTTTTTCAAGTTTTTGATTGTGGGTACATGTATAGAGTACCGTAGAATAGCTTTTCTACCAAGTGGGTCTTGTTTATTTGATAAGCTGAGATATGGTTTTGAAGCGTTCTGCTGTCCTTCCTTGCATTTGCCTTTACTTTTTCCTTCATAGAATGTGGTCTTGAGGTTAGGGCTAGGTTCCTTCTTCCTTTACATCTCTTTTTACTCGTTTTCTTTCTTTATTCCTTTACTTTTGCATGGATTCATATGATGAAAGAAGATCTCAAGACACCAGTCACTGTTTGCGGATGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTTTGTGGTCCCTTCCTACACTCCGATGGCTCTTTGATGTGGGAATCTTGATGATGCTGCAGCGGCAATAAATGGCTAATTTTTATATAAATCATCTCCAAAACCACAAAACAGTTGCAGAAGATCGAGGACGGTGCCCATCATGACAATATCAGGTTCGAACAATGAAGGCAGAACTTGTTAATTATTCTGCAAAAAC | |||||||||
gi|110362274|gb|EC925795.1|EC925795 WIN0210.TB24.1_A18 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA GGAATCTTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TCAAAAGCGAAGCAAGGTGCTAGATTGGCCTAAGCGCTTCCTCATTATCATTGGGATTGCTCGAGGCCTTCTTTATCTTCATCAAGATTCCAGACTTAGGATAATCCATAGAGATGTCAAAGCAGAAAACATTTTATTAGATATTGAAATGAGCCCCAAAATTTCAGACTTTGGAATAGCAAGAAGTTTTGGAGGAAATGAAATTGAAGCAAGCACAACAAGAGTGGCTGGAACATTAGGTTATATGTCTCCAGAGTATGCAAGTGAAGGATTGTATTCCACAAAATCCGATGTTTTTAGCTTTGGTGTTTTGGTCCTAGAGATTATAAGTGGGAAGAGAAACAGAGGATTTAGCCACCCAGACCATGACCTTAATTTTCTTGGGCATGCATGGACACTCTACATAGAAGGTGGGTTTTCACAATTTATTGATGCATCAATAATGAACACCTATAATTTGTCTGAAGTGCTACGTTCAATCAATGTGGGCCTATTATGCGTGCAACGTTTCCCAGATGATCGACCAAGCATGCATTCTGTGGTTCTAATGTTGGGTAGTGAGGGTACATTACCTCGGCCCAAAGAGCCTTGTTTCTTTACTGATAGGAATATGATGGAAGCAAATTCTTCCTCTAGTATTCAACCCACCATCACACAATTGGAAGCTCGGTAGAAGATGCTTCATGTTGATGTTTTGTTGTCTTTAGACCTATGACCATATAAGCTTAAGTTTCTACTACTTTTGGTAACTTTTCGCAATCACATTGGTTAGCTTCTAACAAAAGACTCATCTAAGAGTTATCAGGGATA | |||||||||
gi|156739192|gb|EV243313.1|EV243313 VV_PEd20f02.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence GGAATCTTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): CCCCAAGCGGGCCCTCCTTAGCACCAAAAAATTATATTAAATATCATCAGCTCAAAAGTGAGCAAAATAATATAGGAGGAACAAAAAGAACCAAAAAGTAAATATACAAATGGGTATGGGTATATATCTTCTTTTTCTTTTCCCCTTCATCAAGCATCATCCATAAATGATATTGCAATGTCAAAGAGTTCAAATTACACAGTGCACCTCAATGGGAACCACCCTTTGCTTTCCAAACATAATAACACAGGAAAACAATTAGTGAAGCCACGTGTCTCAAAATTCTACACAAAAAAAACCCAAAAAAACCCAAAAAAAGAAAAAGGCCAAAATGGTTTCATAAACAAAAGAATGGTTTCATAATGACAACACTAGAACATTAGCCAGGTACCTTGAGAGAAGACTGACATTCTGCCACCCTCCAAGGTGGGGGACATTCTTATTTCGTTTCTTGCATGTCATCCTCAGTTTTCCAAACCACATCCTCAAGGCAGGTCGAAAGATTTTTGTAGAACTTATGGAACTCCAGAGTATCTCCCTTTGCTTTTCGAACCTCAACCATATGAAGAGAAGGTGCCACTTGAAATACCTCTGTAGCCACATTAAGGTTCCCTTTTCTCCCAGCTTTCATATTTTCAAGCCTCATCTTATAGTTTTTCTTGTGAACATCAAACCCCAAGAGGCTTCACAGCTTCTTCAAATCTATGAATTATCTCATTGGCAGGGCATTTTGACGTGAACCTCGTTTCTCTCTTGAATCCCTGTNCTATATCAAACAAATTCCCAAGGNTGAGCCCTTCTGACATTGAAATTAATCCAAATGCATTCATTGCTGCTGGGTGTTCCTTCCGTTTTCCTCGGAAACATGATTGTTCTTCTGAATTCTTTTACTCCGGGCCCAAATCCTGGCAAGCCGGGGGAATCCCCTAATTTCCTAGAACGGCCCCCCCCCCCCGGGGGGACCTCCAAGCTTTTTGTTTCCCTTTAAGGGGAGGGTAAATTTTCGAGGCTGGGGCGAAAACATAGGGCCAATAACTGGTTCCCCGGTGGGGAAAATTGTTTCCTCCGCCCCCACATTTCCCCCACAAACAATAAGAGAGCCCGGAGAAACAATAAAAGGTGAAAAAGCCCGGGGGGGGCCCCCTAAGGGGGGGGGCCCTAACCCCCCCTTTAATTGTGGGTTGGGCCCCTCCATGGCCCCCTCTTTTCCAGGTGGGGGAAAACCCTTTTCTGTGCC | |||||||||
gi|110713794|gb|EE090027.1|EE090027 S6B05790 Fruits 7-9 mm (VvS6) Vitis vinifera cDNA clone S6B05790, mRNA sequence GGAATCTTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): GGGTCTAATCATCAACAATGGCAATCCGGTCCCCCACAATTGTTTGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATGATTAGACCCAACCAACAATGGCCGCAGAAAAATGGGTTCCACTCTCTCATCAGACCCTCCTGACCCATACAAACAATTCTTCTTCTTTATTTTTTTTCTTTCCAATCTTTTTTCTCTTTTCTGCCTCAGCCATCACCTCCCATTTTCCATTCTTTTTCAAGCCCCACCATACCATGTAAAAAGAAAGGAAATCAGTGTTGTGTACGTGGCTGTCTGTCTTCTACCTCTCAAAACCTCCTTTACAGAGACAAGAACAAAACCAAGGAGGTTTGAGGGGTGGTGTTGGGGGATATGAAGAGGAAGGATTCCTTGTCTCTGGGGAAATGTGGGTCGTCGGTCAAACTAACAAAGGAACTAAATCTTCAACTAGATATTCTGGCTTCTGACTAAAACTACTGCTGATCTGTTTATATGTATTGATGATGATTTGTTTTGCCCCTCTGCTATTTATAACTGCACCTTTTCTAATATTTTAGTTATCATCCTTTTCAATACCAATTTCCATGTCTTTAAGAATATCGATTGTTGTGTGAATTTCTTACTATTTTTAATTTTTTTTGTTTGTTTTTCCACCTATTCCTCTTGGACTGTAAAAGCTGTTGGAACTGATTCTCTGGTTCCCTGATCGAGTAATAATATCTTAGAAAGTGTGACATAAGAAAGAAATTTCTGATGAAATCCATTTCA | |||||||||