| mature miRNA: GGAGCATCATCAAGATTCACA species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|156731647|gb|EV235768.1|EV235768 VV_PEb22c07.b1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): CAGGGGGATCGGCCTTACGGCCGGGGACATAATTTTATTGGTGGAGGACAGAGCAACCACAAGTCATGCCCGTACCATTTTTCTCCCTGAACCTGCATTCTCTTGCAGAACAACTCACAAAAGTAGATCTATCACAGAGGCTCTTTGTTGAAGAGGGTCTTTTGTCACCAGAGCTGATGTCAGTGAGCTCTGAGGGAGTAAAAGTGAGCAGCAATCAAGAAGCCAACCAAATGCAGAGAACTAGCAAAGGAGCCAAAATAATAGTCGATGAATCAGCTGCCCCTAGCTTTCCTGAGAAAGATAAGATTGTGGACAAAAACAAGGAGGTAATGTCATCTGACACCACTATAATTCGAAATCCAGTTATAAGCTCTCCTAATCAAAGCGCAAAGTCAGAGAACCAAGTTAAGGATAAAGCGAAACAGTTTGGCAGAGCTGCCCAAACCAGAGATCTGGAGCTTGCAGCACAAATAAATAAGGTTTCTGTTGCAGACCCTGAGAAAAAACAGTCAGTATTTGAGGCAGCAGCTGCAGAAGCCGAGCTGGATATGCTTCTTGACTCATTTAATGAAACAAACAAATTTGATTCGTTGGGCCTCAAGAAGTCTCGTAATGCTCTTCCTGTTTTCCAACAAAAGCCCTCTATGACTCCACCGCAACTTTCAAGAAAAGTTGTTACTGCCAATCTTGATGATGCCCTTGATGACCTACTCGAAGAAACATCCAATTTGATGGACCAAAATGGTACAAAACCGCCTCAACAAGCCAAACCCACATCTCCTGGCATCCAGTGTTCTTCTTCCTCTCATTCTGGTCAGGGTTCTAAAGTTTTGGATGATTTTGATTCATGGCTAGATACAATTTGACTGTTTGGAACCCAAAAAAATATTCAGCATTATCCAACTCTGCTGTGCTGTATCGAATGATGTTGCTTCCGTGTGTTTTAGGAGATCGAGAAATGTTTAAAAGGCCAAGCCTCGAGTCTGCTCCAGGGCAGTCTAATGGAGTTCCTAATGTAACTCATGAATCATTGTACAAAACACTACTGAGTTTCAACTTTGTACTCTTTCTTTCTGTACATTTTCTTTTATAGCAGCTTCAAAGAATTGGATTGGAAATTAATGGACTGGGTTGGATTTTTGGTTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGTGGTCCGGGCCCCCCCTCCCGGCCCCCCGCTTCAAA | |||||||||
gi|122690849|gb|EC960881.1|EC960881 WIN084.C21_P12 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN084_P12 3', mRN GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): ATGGGAGAGGAGGGAGGGTGAGAGTGGGGAAGGTGGGAGTGGGTGTGTTGAGTGTAGTGAGCTGGAGATATGTGAGTGTTGATGATGCTCTCAGGTACTTGCAGCATTTTCTTTCACCCTCTCATGACTGATGAGTAGAAATGCACCTCTGCCTCAGTGTATATCTATAATGCCTCTATTTATATTATCATGTTATTATCTAA | |||||||||
gi|110417596|gb|EC983666.1|EC983666 WIN1119.C21_J06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): GTCCAAGTCAAACTATACCCTACAAGAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACTCTTAATACTCCCATCATTGTCTTTACAAGAACTGGATCCATGGCTATAACTTTAAGCCATTATCGGCCTTCCTCAACAATCTTTGCCTTCACTAATGAAGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATTTATGCAGTTTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTGAACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGTTGAATCTACTCACCACATCCAAGTTCGTAAGGTCCAAGGTTGATTTTGTACTTATGAAGAGGTTTCGTTTTTCGTTTTTTTGTTTTTCTCCTCTTTTTAGTAATTGGAGTAGCTGGTATCTCAATGCAACTTTTGGTTTTGATTTAATTAGTAACAATCAGGTGTTTCGGTTTTTTCTGTAAAATTGTGAAATTGGATGATGTTCTAATCAGTTTGAGGAAAGTTTGGTATTTATTTGAGATGTTTTTGATAGAATAATCATTTGAATAATAAAGTTCCAATAGGAGTACGCAATTATTTAAAAAAAAAAAAA | |||||||||
gi|110699977|gb|EE077493.1|EE077493 S2B10405 Buds (VvS2) Vitis vinifera cDNA clone S2B10405, mRNA sequence GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): ATAGATGCTCGCTCAACTGGAAAATACTATCACTTTGTGCGACTTATGGGGCGTGCAGCCTCACACATTACATTGGAGTGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGTGAAGAGGTTGCTGCTAAGAAGCTGACCCTGAAAAATGTTACAGACTACATTGTTGATGTTGTCTGCAAACGTGCAGAACTTGGTTACAACTATGGTGTTATACTTATTCCGGAAGGCCTTATTGATTTCATACCTGAGGTGCAGCATCTTATTGCAGAATTGAATGAAATTCTGGCTCATGAAATCGTAGACAACGCTGGCCTCTGGAAAAAGAAACTTACAAATCAGTCTCTGCAACTGTTTGAATTTCTACCTCCAGCAATTCAAGAACAATTGATGCTTGAAAGAGATCCACATGGGAATGTCCAGGTTGCAAAAATAGAAACAGAGAAAATGCTTATACAAATGGTTGAAACCGAGTTAGAGAAGAGGAAGAGTGAGGGCATATACAAATACAAAGGTCACTTTAAAGGGCAGTCCCACTTCTTTGGATATGAAGGGAGGTGTGGTTTTCCAACTAACTTCGATGCTGCCTACTGCTATGCATTGGGTTTTGCTGCTGGAGCTCTCCTTCACTGTGGGAAGACTGGGCTGATATCATCGGTTGGGAATCTGACTGCTCCAGTTGAAAATGGACTGTTGGTGGAACTGCCTTGACTTCATTAATGGATGTGGAGAAGAGACATGGTAAAGTTCAGCCTGTGATCAAGAAGCAATGGGTGAACTTGATGGTGCTCCATTCN | |||||||||
gi|294965536|gb|GW839107.1|GW839107 Summer_Black_2504 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): GGGGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTATGTGGTCCCTTCCTACACTCCGATGGCTCTTTGATATGGGAATCTTGATGATGCTGCCGTGGCAATAAATGGCTAAATTTTTATATAAATCATCTCCAAAACCACAAAACAGTTGCAGACGATCGAGGACG | |||||||||
gi|110373840|gb|EC938231.1|EC938231 WIN055.C21_P18 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone W GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): GATTGCAATGAAAACAGAGGCAATCAAGGAGCTGTTTGGACTGAGGCAGAAACTTTACTTCTTTTGGAATCAGTTTTAAAGCATGAAGATTCAGAGATAAATGAAAGGCCCACTCTATCAGAAATGCAGAAGACATCCTCTGAGAAGAATGCCATACCTCTACCTTTGCAAATGAGGGCTGCATTTGCAACAGCCCTTGGAGCAGCTGCTGCGAATGCCAAATCATTGGCAGATCAGGAGCACAGAGAGATAGAACATTTAGTGGCAACCATAATTGAAACACAGATGAAGAAACTTCACTGCAAAATCCAGCATTTTGAAGACTTGGAGCTGATAATGGAGAAGGAATACACCCACCTAAAGGAACTGAAAGAGTCTATCATAGCAGAGCGGATTGATATCTTGCAAAGGGTATTTAATGCTGGAATATCTAGATGGAGGGATCCTATTTCTGTAAAATCTCATACTGGTAGTGTATCTTGATGGTGCTTTAGTTTAAAGTAATTTTTTAGTCTTCTTACAGCTAAAGGAAGAAAAAGGAAGCTGATGTTCCATATTGAACTCTTCTGTCTTCTATGTAAACACTAGGCTCATATCTTCATTCTTGGTATAAATGCAATCACTTGA | |||||||||
gi|110409973|gb|EC975648.1|EC975648 WIN1028.C21_N20 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): CTGTGATCAAGAAGGCAATGGGTGAACTTGATGGTGCTCCATTCAAAAAATTTGCATCTATGCGGGATGAGTGGGCTCTCAAGAATCAATACATCAGTCCTGGTCCCATTCAATTTAATGGTCCTGCATCCAATGACGTAAACCACACTCTTCTACTGGAATTCGGAGCCCATGCCTAAACATGATCGTTTTGCTCCCACATGGATGCGAGCCTATATTTCCTAGGGAGAGTCCACATGGATGCGAGCCTATATTTCCTAGGGAGAGTGGCTAAAGGCTCGATTGTGCATCCTCTGGGCTCTTTTTTTGTTATTTAGTTAGACTCTTTGACATTTGCCTTAAGTTTTATTTGAGGATGGTACTTTAAAACCCAGCCCAGCACCAATTAGCAGGACTCAGACACTTTGAAGGTTTTCATCCTCTGTTTCGCCATAAGTCTCTCACCTCAATGCAGTGAAAATCCTGTAGCCCCAAGTCCTGTTTTCTTCTGCCCTGTTCGGCGTGATAAGCTGCTGTTCACTCAAAACTGTCCCTCAGACCATTCCTTCCCACGAGGGGGGAAAAAGGTCAAAAGCCTGTGGCTGATGTTTTGAAGCTGCAGTGGTCATATGTTGCACTAAAAGGGATAGAGAGATGTCTGCAAGTTGAGTTATTTCTGGAAATAAAAAAATTGCTCGTGTCAGCCAGAAGTGCGGGGCTGCAAAAGCATTGCAAATATTTTGATTATTATTGTCATTATTGAAAAATAATCCCGGAGAAAATGGATATCCATGCTATAATTGGAACTTAGGAAATAGTGCATGCACAGTATGTTGCTCGTGACGGCAAGTCAGAACTCCTAAATTTAAGTTTTCATCGGAATATGAACTTAAAGGGAGAAAAGCTATTTATAAACTGTAGCTAGAGCTCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|161716172|gb|FC066837.1|FC066837 sT7aVVM017A01015 VVM Vitis vinifera cDNA clone VVM017A01015 5' similar to emb_CAO39844.1 unn GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): ATAGTAAGAGTGACTTACTAAGAACTCGTGACAACCACTCAAAGAAACCTGCCTCAAGGGAAGAAAGAGATCAGAGATTAGACTGCTTTTTACAACCCAAAGATGATCCCAATCAAGGCACTTTCAAACTTGTTCGAGCTTTATGGAAAAAGTTGCAGCAGATTGAGATGCTTGAAGCAAAGCAATCCAATGGGCATCTTCTTGATAACCAGCAGATTGCAAAGCTTCAAACAAAGTCGGCTCTTGAGATCTCACTTGTTGAACTTGGTGTTCCGTTTGAGACAATACAGGCAAAAGCATCATCTTCAGTTTTACCAGATGGAAAAGGGAATAGAAAGGTGGAGGTATCAAGAAAACAGAGGAGAAAGAGCAAGCAAGTGGTAGCACAAGTTGAAGCTGTGTCTGTTAATTGTGGGACTGATTTAGAAGCCAATCCTGTAAGGGGTCTCTTGGATGCTGAAATCCCACAAGGTTCAGATCATAAGGAGGGGGATGCAGAGTTTGAAGGAACTCCGACCAACCAAGTCACTAAGGAGTCCCCTTTCTGCATACAGAAGAAAGAAATCTTAGAATTGCCAAAATGTAAGAGTTCAACAGCGTTGAAGAAGAAGAAGAAGAAGGGTGGGCTTTCTATGTTTCTGAGTGGTGCTCTTGATGATGCTCCTAAGATGCTGCTC | |||||||||
gi|110391785|gb|EC956785.1|EC956785 WIN0574.C21_M08 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): TTCCATTATTTCTGCTTCTGATGGGGCAATGGTTGCACGTGGGGATCTCGGAGCTGAACTTCCAATTGAGGAAGTCCCTTTATTGCAGGAGGACATCATTAGAAGGTGTCACAGCATGCAGAAACCTGTTATTGTAGCAACAAACATGTTGGAGAGCATGATTAATCATCCTACACCAACAAGGGCCGAAGTTTCTGATATTGCAATTGCTGTAAGAGAAGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCCCATGGAAAGTATCCGTTGAAAGCTGTTAAAGTAATGCATACTGTGGCATTGAGGACTGAGTCTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAGAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACTCTTAATACTCCCATCATTGTCTTTACAAGAACTGGATCCATGGCTATAACTTTAAGCCATTATCAGCCTTCCTCAACAATCTTTGCCTTCACTAATGATTTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTGAACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGTTGAATCTACTCACCACATCCAAGTTCGTAAGGTCCAAGGTTGATTTTGTACTTATGAAGAGGTTTCGTTTTTCGTTTTTTTGTTTTTCTCCTCTTTTTAGTAATTGGAGTAGCTGGTATCTCAATGCAACTTTTGGTTTTGATTTAATTAGTAACAATCAGGTGTTTCGGTTTCTTCTGTAAAATTGTGAAATTGGATGATGTTCTAATCAGTTTGAGGAAAGTTTGGTATTAAAAAAA | |||||||||
gi|110391992|gb|EC957091.1|EC957091 WIN061.C21_K23 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_K23 3', mRN GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): TTCCCTCTTGTCCCTCCTTTAGTCCTTTGCTCAGATACTATTAGCTTTTCTCTTCACATTCTCTCATCTTTTTCAAGTTTTTGATTGTGGGTACATGTATAGAGTACCGTAGAATAGCTTTTCTACCAAGTGGGTCTTGTTTATTTGATAAGCTGAGATATGGTTTTGAAGCGTTCTGCTGTCCTTCCTTGCATTTGCCTTTACTTTTTCCTTCATAGAATGTGGTCTTGAGGTTAGGGCTAGGTTCCTTCTTCCTTTACATCTCTTTTTACTCGTTTTCTTTCTTTATTCCTTTACTTTTGCATGGATTCATATGATGAAAGAAGATCTCAAGACACCAGTCACTGTTTGCGGATGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTTTGTGGTCCCTTCCTACACTCCGATGGCTCTTTGATGTGGGAATCTTGATGATGCTGCAGCGGCAATAAATGGCTAATTTTTATATAAATCATCTCCAAAACCACAAAACAGTTGCAGAAGATCGAGGACGGTGCCCATCATGACAATATCAGGTTCGAACAATGAAGGCAGAACTTGTTAATTATTCTGCAAAAAC | |||||||||
gi|294966169|gb|GW839392.1|GW839392 Summer_Black_2789 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): GGGGAATATGATTTTGATGATGCTCCAAGTCGAAAGACCAGGAAAAAGGAAGGGGGTAATGACCGTAAGTTAACTGAGAAGAATAACTTTGCAAATCGTATCTTGACTCAACAAGAGCGCTGCCAATTCTGTTTCGAGAATCCCACTAGGCCAAGACATCTGGTTGTAGCAATTGCTAATTTCTCATACTTGATGTTACCCCAGTGGCAACCTGTCGTACCAGGTCACTGTTGTATTTTGCCAATGCAGCATGAATCTTCTACAAGAACACTAGACAATAATGTATGGGATGAAGTTCGCAAATTCAAGAAGTGCTTACATAATGATGTTTGCGAAACAAGAGAAGGATCTAGTG | |||||||||
gi|110421052|gb|EC987339.1|EC987339 WIN1130.C21_G09 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo GGAGCATCATCAAGATTCACA EST sequence (targeted fragment marked with yellow): GGACACTCTTTGGGGACATGTTCTAAATGAGATGTACCACAGTGCCTTAAACTTGAGTCTGCGAGTTGCTTATGAACTGGAACAAGAACAGGAGATTATACAGCTACCAAGGGAGAAACGTGTTGGGGCGCTAGGGAATAGATTTGAACGGTTAAGAAAAGTCAGGATACTCTTGGAATCATCCCTTATGAAGCTTGATGATGCTATCATGCTCTTCAATGATTTCTGAATATTTCTTTGTATGGCTCTTAAACCACAATGCTCCAGCTCCTTTCATTGTCTGATAGGCTGAATATGCCTACTGCTGAGGTAACTGGTAAGGCAAAAATTTGGGTTTGTCGATTTCATTATTGTGGTGGCAAAGAGCTGAAAATTTCTCAACTTAATTGAGATGGCAGGCATGGATACCTTTTTTGAACAACCCAGTTGCCTGAATCAAAGAAGAAGAGATTTCCTTCTCAAGGAAGGATTCTTGCTCACTTCCCCAGAGTGAGCCCTCCTGGAGGATGTGAGCCAAAAGGTAGTGGACATACAATGAGTCAGTGACATTCATATATTGTTCTAACTTTCTGCCATAAAATGGAGAATGTTACAGAAACGATAAGCAAAAGTGTTGAGTAGGCTTTGTTTTAAGTTTTATTGTATTGAAATAAAAAAAAAATAATTATTTAAAAAAAAAAAAAAAAAA | |||||||||