| mature miRNA: GGCCGGGGGACGGACTGGGAA species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|299827279|gb|GR390614.1|GR390614 FS-VVIN-lig1B_B07 Fruit set (FS) RDA subtracted library Vitis vinifera cDNA clone FS-VVIN-li GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): AAAAAAAAATAAAAAATACCCCACACGGGGGGGGGGGGGTTTCCCCCCCAAGGGGGGGCCGCCCCGGGGGGGGGCCGGAAAAAATATATTTGGAATAGGGAAAATTGTTTCTTTTCCGGGGGGGGGGAACCCCCCCCCCCCCCTTTCCCGGAAAAAAAAAAAAAAAAAACTTAAAAAGAGGGGGGTTTTTCCCTTTTCCCGGGTTTCCGGGTCCCCCCTTTTTTCCTCCCCCCTCCAAAAGCCATTTCCAAAAAATGGGGAAAAGGAGCAAAGTTCAACCGGGGTTTTTTTTCCCCCGGGATTCCGCCAAACCCGTTCCCCTGGGCGGGGGGTTCGCGGGATAGGAGGCAGGGACAGGTGGAATCTCGTTAGTCCATCCATGCGCGTCACTATTAGATGACGAGGCATTTGGCTACTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAAGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGACGCCCGGGGAAGGCCCCCGAGGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGGAGCAGCTCCCTCGGATAGCACAGTTGCCTAATCGAATTCCCGCGGCCGCCATGGCGGCCGGGAGCATGCGACGTCGGGCCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGATACGTGG | |||||||||
gi|161720712|gb|FC069949.1|FC069949 sT7aVVM026F05027 VVM Vitis vinifera cDNA clone VVM026F05027 5' similar to ref_NP_191141.1 un GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): GTGCAATCTCTCAGGAACAAGAATTTTTCTGAATCAGAATTCCAGAAGTGCTCGCATAGAGTTTTTGCAGAGGAGATCGAGATGGAGGCGCCAATCTCTGTAGTCGAATCCGTGTTTCGACTCTTTTGATGGAACTCAGATTTCGAGTTGAGCTTGAGGAATTTGCAGAGCGATTGCGGATTTGTTTTAGTTGCTAATGAGAAAGTTGCAATGAGGAGAGGCTGGTGTATGAAGGATTCAATCGCTTTTGTTTGTGTAATGGTCACCGTTTGTAGCCTTATGGTTGTGATCGTGACAATGCTGAGACTCCCCGAGGTCTCAACAAGGCAAAACAGCGCAATCAGAGAGGGGTTCAATGACGAGAGCATAGGAAAGTTCGGGGAGATGATGCTTGAAATGTTGCCACAAGATCTGGCTTTCACGATCTTCGTCCCTTCAGAAAAAGCTTTCCAACGGGATTTGAGGCTACAAGTGAATCGGAGTCTGGCGGCAGAGCAGATGAACGATACCTACGCCGTGCTTTCTCGTGTACTTGGTTTCTCGGCCGTTCCCCGGCCGCTGTATTCCAAAACGATGCTCTTTGGAAAAGAAATGTGTTTTGATTCATTGTCTGGATTTGAATTGTGCATTTGGAAAGAGTCCGATGGAGCGATGATAGTGAATAGAGT | |||||||||
gi|122689180|gb|EC934404.1|EC934404 WIN051.C21_C15 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone W GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): ATTCATGCAACTCTGGCAGTGACCTTGTCCTCACTCACTGTGGAGGATGGGCGTTGCCCAGTTTGTCCTCTGGCCTCAAAATCATCTCCAAAGCAGATGCAAACGCTAGCGGTGACCCTGGCTTATCTCATCTATGATCTGATTTGCTGCCTCTTGGAGGACAAACGTGTCAATCTCGACAATTCGATCCACCATTTAGTTAGCATTGTTGGTATTGGAGCAGGCCTCTTCTATGAAATGGTAACAACTAAGAATTAATAATGCTACTTTACTCAAATATTTTGGTGACGAATTAATGTTAAGTATGGGGATATATGCAGTGTGGATCAGAGATGGTTGCATCATTATGGATAACAGAGATATCCAGCCCTTTCTTACACTTGAGGGAGCTTCTCAAAGAGCTTGGGTACAGGGACACCGATCTTAATTTGACCGTTGATATGTTATTTGCAATCATATTCACAATTGCAAGGATGATATGTGGTCCATGCCTCGTTTATGTCACTCTATCTGCCAGCAATCCCCTCCTCATAAAGGCAATGGCTTTGGGATTGCAGCTGGTCAGTGCTTTCTGGTTCTTCAAGATTGCTAGGATGGTGAAATACAAAATGACTAAGAGGACTAAATCTAAAGCAGTTGCTTCAAGCCTATAACATGGCCACACTGTAATAAAAACTCCAGCAGGCTTCCTCTCTTTGTTGTCTTCGAATTGCTTCTTCACCTCTCAGTTCTCACGAAATTGTACTACTATTGAACACCAAAAATTCGGGCTGGGGGGTGGAGGTACACGGGGCTTCAATGCCTAAAAACATGTTCTCTCTCCTAACAGTCTGGATGTCATGTACCTTAGTTTATTGTTTGAATGTCATGAACAAGTTTATTGTTAAAAAAAA | |||||||||