| mature miRNA: GTTCAAGAAAGCTGTGGGAAA species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|122691264|gb|EC971202.1|EC971202 WIN104.C21_A14 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): GCATGTATTTCCCACATTCCAAGTGGGCTTCAGGATCATGGGAGTTGCTCTCTCTGGCCTGCAAATAGATACATTGGATATAAAGAATCTACCAAGTCGCCCATACAAAGGTTTTCGAGCTCTCACACAGGCGGGTCAATACGAAGTAAGGTCATAGCTTTCAACTCTCTGTTGAAGTTAATTTTGAACCATGCTGCTTCTGGATTGTATTGTTTGTTGTTGTCCCATGTTATAATGCACAGATGAAGAATTTCACATATCTTTCTTGAATAAAATTTTTTATATGGTTTTTTTTTTTTAAAAAAAAAAAAAAA | |||||||||
gi|156737675|gb|EV241796.1|EV241796 VV_PEd02f11.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): CCATAGACCACGCGGTGGCGGCCGCTCTGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACCAGGAGCCGATTGGATTCACTCGGATCATTTATAATTTTTTTAAAACCTTTTCGTTTACGGTCAAACAAGAAAGTTGCACACCTGGATCTCTCATCTGCCCAACATCACCTGTGAAGTATGTCGGGAAACCTACAGCGTGTGATCGTCGCCGTCGATGGCAGCGAGGAAAGCATGAAAGCCTTGAGGTGGGCGCTTGATAATATCAAGCTTCGATCGCCTCCCTCCCATGCCGAAGCCGGCTCCTTCGTCATCCTACATGTTCAATCCCCGCCCTCCATCGCTACCGGTCTCAATCCCGGTGCCATCCCCTTCGGCGGTCCCATTGATTTGGAGGTGCCTGCATTCACTGCGGCGATTGAGGCGCATCAGCGGCGCATTACTGAGGCCATACTTGATCACGCTTTGAAGATTTGTTCTGATAAGAATGTTAGCCCTATTTTTATCTCTTTATTTATATTTTACTTGGTTTTAGATTGTTATAGCTTTCTTGAACACTTTAATGAAGAATCAATGAATCTCAGCTACAATGCCTGGCTTCGAGAACGTTCCTCGCTAGACATGATTTCTAGTGATGAGCTCAATCTTTGAAAAGAAAGTGATGTGACTCACTAAGATGGTCTCGACTTGAAAAGTCATAAACCACTTACATTCAATCTTCATTTATTGGAAAAATACTAAGCATCCTTACCGGTTTTGATATGTGGATATATGTGGTGAAATTTAGATCATTCCAGACGAGGTTAAAGAAAAATTGGTACTGAAGTATGACAGTAGTAAGCCAGGAGTCCTAATGGTGTAGATTCNGCACCACTTAATTGGTGGTGACTTTCCGGTAATGCAAAAATAAAACTAGCTTTTTGGTATTGAAGCAAGACATACATTGGGATGTTTTATGCATATATCATGACATCTTGTCTGCCTGTCATTTTTGAAGTTCACGGGTAGGGCCTACAGCTGGAATTTTCCAAAGGCCTCATTTTGGTGGGTAAAGCAATAAATTTTATGTTAAAAGGGGGAAGCCTTGATATTAAC | |||||||||
gi|110391796|gb|EC956797.1|EC956797 WIN0574.C21_M21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): GCAGAAACCAGCGTACTCATAGATACAACAGCATGTGCTTTCCTCAGGGCATGTGTAGTATTCATCGCAGACTACACTCGGCTTGAAGGAGAAGGAGGGGATGGACCGGGGTTAGGAGGGTTCTGCCCATTCTTGATTGGGTAAGAGGGTTCTATTGCAATCCCGCACTTGCCAGTTTCAGTGCCGGCCAAATTACGCTCCAACTTGATATATCCACTCTCCCCCCAGTTAGGGCCCCATGAGTTCCTAACAATCCAGTAGTCCACACTATTTTCTGTACCATATCCCACAGCAACTACACCATGATCCAATTGTGTCCCGCACTGACCGGTAAATACACCTGACTGGTAGAGTTGGAAAGCCCTGCCACCGGCTTCGATGGCAACACTAACTGGTTGATTTGCCACAGCTTTCTTCAAGGATCTCTCATCGTTTTGTGGAACATCTTCATATCCATCCATGGACACAACCCGAGCATTTTTCCGGTTAGGATCACAGGTTGTATCAGCCGCCCGGTAAGGGTAATCTTCTTCGCTATCAATGCCACCATTGTTGATGATGAATTCAAAAGCATAGTCCATGAGACCTCCATTGCATCCTTGGTTGTATGACTTATCACAATCCACCAGCTCCTGCTCTGATAGAGAGATCAGATCCCCCGTTGCTATTTGGTTTATCCCTTCCACAGCAGCAATGGTCGAGAATGCCCAGCAACTCCCGCAGTTGCCTTGATCCTTCACAGGAACAACGGCGCCTTTCTCCCTCCAGTCCACCGACTCCGGCAAGTCTTCGCCGGCCCGAAAGGAATACCGATCGCTAACCCTGCTCGCTCTCAAACCCCGCCGGGTCTCATCGCGCCTGCCCAA | |||||||||
gi|110403014|gb|EC964043.1|EC964043 WIN087.C21_B19 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN087_B19 3', mRN GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): CTGGAGATGAAGCTGTTGTGGTTGAGGCTGCTGCTGCCCCTCCTCTAGGTGAGACCTTGGACCTCATGACAGCCTTGCAGCTTGTCCTGAGGAAATCATTGGCTCATGGTGGGCTTGTACGAGGCCTCCATGAAGGTGCTAAGGTGATTGAGAAACATGCTGCCCAGCTCTGTGTATTGGCAGAGGACTGCAACCAGCCTGACTATATTAAACTTGTCAAAGCGCTTTGTGCTGACCATAATGTCAGCCTTATATCAGTGCCTAGTGCTAAAACTCTTGGTGAATGGGCTGGTCTGTGCAAAATTGATTCTGAAGGGAAAGCAAGGAAGGTGGTCGGTTGTTCTTGTGTTGTTGTGAAGGATTATGGGGAAGAAACTCCAGGTCTTCATATAGTCCAGGAGCATGTGAAGTCCAATTGAGTCAGCTTGGGAGAATGAAGCTCTTTTGCTTTAACAGAGGCTTTCCTAGTAGTGCTGTACCTTCTCCTTTAATATTGTTTTTGATTATGATACTGGATAGTGAGAAAACAAGTTGAAAATGATGTGATCATGAGGAGTGTTTGAAGTAACTTCTTTGGATTTTGGGAACTTTGGAATCGTGCGAGCATCCAGCTCTTTTTGGTCTTTAAAGGAATGTTCTTTACTTATATTTTACTTTTCACAGCTGTCTTGAATGTTAAAAGTGTAGTAGGTCCCCATTTGGCTTGTTTTGGATAGGATTTGGTTCACAGCACATGGACATTTCCTTTCTTGCATGATCAAAAAAAAAAAAAAA | |||||||||
gi|161706460|gb|FC056780.1|FC056780 sT7aVVM_AER98B01 VVM Vitis vinifera cDNA clone VVM_AER98B01 5' similar to emb_CAO66978.1 unn GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): GACTCCTCGCCTTCCATTGAATTACCAGGACTGCCCTTGCTCAGTAGCCGTGACATTCCCTGTTTCCTACTCCCCTCAAATGCAAATGAATACAACTTCGTCCTTTCAGCGTTTCAGAAGCACCTAGAGATGCTCCACCGTGATACCAACCCAACGGTACTGATAAACACTTTCGATGCATTGGAACCAGAGGCCCTAAGGGCTGTCAGTAAGTTTAAGTCGATTGGAGTTGGACCCTTGTTTCCAACCGCTTTCTTGGGTGGAAAAGATCCATCCGATACTTCATTTGGAGGTGATCTGTTCCGTCGTTCAAAGGATTATATAGAATGGCTGAACTCAAAGCCTGAATCTTCTGTCATTTATGTG | |||||||||
gi|110695447|gb|EE073472.1|EE073472 C4B03382 Berries veraison stage (VvC4) Vitis vinifera cDNA clone C4B03382, mRNA sequence GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): TTTCTCGGGAATGTGGACCATAACGATAAAGAGAAAGAGATAGAGGGAAGATGAAAAGATCAGTGGAAACAAGGAAGATGGAGAATCAGAGGATAGAGGAGAAAGCACCACCTATGATCATAGCCACCACTAAGGGTAACTCCTCTGGAAGAAAGCTGGACACCATTTATGAAGACAAGGACCCACATGGACGCTCTCAGAATCAGACGGCTGGGGTCTCTTGTGCCAACTCTGAAGGGTGACTTACGCTGTGCTCCTTTCTAATAGATATATGTGATGTGTATCTGTAAATTACTTCATTTTCAGTTCCTGTCATGGGGTTGACTGAGAGATGGTAAAGTTCTCGGCTTGTTTCATCGTTCAATATCAGGACCGGTCATGAAACGTTTTGGTTTGAATCTTGCGGGTTTTACAAATTGTTTAACATTTTCGGTAAGTGAAATAATAGCTTACCCCCACCTTTCTTGGACAGGCTGGCATTAATAGAAGGGATGGCTTCTCTTGGGGTTGCGTGGTGCGGGTCGGTGCTCTGTGAGAGAAGAACGTAGATTCCATGCCAAGGGAAATCCCTCGATTTGAGTCGTGATGCATGGTGAGTATGTGGTACGAGGGTCTCGGAGCCAGGGTACAAAAGATATTATGCTGCTTGGACCCAGGTTAAGAGTCGCCGGCATGTGAATATTGGGAGTGCGTGATCAATGGTAAGAGCATTTATATGCTTGAAGCAAACACAACAGAATTTATTTAAAAGCTCGGAACTGAGAGT | |||||||||
gi|161708451|gb|FC057876.1|FC057876 sT7aVVM_AER39F04 VVM Vitis vinifera cDNA clone VVM_AER39F04 5', mRNA sequence GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): GAGAAATTGTATGGGCATGCTTCATTTCATCATCTCCTTCCTTTCTCTTCCTCCTCTTTCTTTCCATCTTAATATTAACGTCACGGTGGAAATTAAAGACATGTGAGAGTGAGAGTGAGAGTGAGAATGAGAGAGATTCATGGAGATGAATATTATGAGATTAGCAACTTTTTCTCTCTGCAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTCTTCTCCCTGTTTGGTGGTCTCCTACGTTTACCCATCCACTGAAGTTCAAGAAAGCTGTGGGAAACCATGGCTTTTCAGGACTTCTGCTTGCTGTTTTGGGCTGCGATGATCAATTAATGGTCTAATTCCATTTTCCTTTTGGTGCATTCTTCACGAAAAAAATGACAAGGTTTGGTGGAAGGATGCTGCTCCAGTGATCTTTCCATACAT | |||||||||
gi|122690176|gb|EC949035.1|EC949035 WIN0545.C21_H02 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): GTTTTCCTCTTTTCTCTTTCAGATTCAAAAAAATGTAGAAAATATTAGCATCTTTGCCTCAATCCCTCCAAGTCGTTGTTCCCAAAATTGATTCTGTTGTCTACCCATTCCTTGTCATTTTCCCCAGAAAATGTAGGAAAATGAAAGAATTTTTTTTTCAATCTTATATTTTGCATGGAACGTTAGATGGGTTTATCATTTGCTGGAAGCTTCAAATAATTTTCCCTCCACTTTCTTGAGCACAATTAGGGTTTCAGTGTGAGTTATTTTATTAGGTTCCCAGATTATATTTTTAAAAGATTGAAAGAGGTAAATTTTGTTACATTGATTGATTTGCTCATTTGATGCTATTGCTGAAGCCATCAGTTTCCTTAGGTCATGTTGAATGTCTATTGCCTTTTCCCAGTAGTAGCACTGATCATAATGCTATGTACTCACAAACAGAAACTCAGGGGAGGCTGAGAAGCAACTGGGCTGGAACCGGAAGCTCAGGTGGTTTACCAGAATGGACTCCATGGATACCCTAATTGACTGGATATCCTGGTATGGATGAGTGGCGGTTTTTGGTTTTGGCAGCAGCTTTGGTGGACATTATACATGACAAGTTTTGTATCACATCCCAAATGTGTGGTGGTTGTGTTGTGGGAAATGTTAAGAGACCACCCCTCTAGTCTTGTGTGCTTGCAATGTACATAAAATTTTGGATAGATCTCTTCATCATAAACCCGATTCA | |||||||||
gi|110375807|gb|EC940826.1|EC940826 WIN0520.C21_N21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone GTTCAAGAAAGCTGTGGGAAA EST sequence (targeted fragment marked with yellow): CAACAGATCAATGGAAGGCGGTGGCCCGGAAAGTGCGAAATGAGTCCCACCAGCTACGGTCGTTAAGGGCTGAGCAGCGATGGCAGCAGTAGTGGATTTGAGGGCCCCAACAGAAGCAACAGCAGCACCACCACCACCACCCGCGGCAGCGGGTGTGGGGATTTCCACAGGCTTTCTTGAACGGTTTCGGCCACGGTGCATGTGGCGCTCGCAGTACTTCTGACCAGTTACCACGTCCCTTGAGCACCTCCATTTTTTACCGTCTGTTCTTCGGCAACGCCCGGGCTCCGGATCCATTGCAGCTCTTCCCCAGTACCCTGATTGCAACAAAGCAGGCTGATAATGCTGGTAATGTTGAAGAGGGTGCTGGAGGTAGTATGGAGGATGGTTAAGAAGGCTTTTCTTGATTAGCTGAAGGAGTTCAGGAGGCACAGCAGCACCAGCTAACATGTGCCTGGAAACAAGAAACCCAGAAACTTTTCCATACCGGGAACCAAGCTTTCTGAGTTGTTCTGCCACAACAGATGACAAGAATAAAAAAAGGGAGGGATAGAAGAAAAGGAATACAGATCTTACTGGAAAATCTGGTAGCAGTTGTTGTTGAATCTGGAAATGCTGACAGGTTGCTGATCTTGCTGTTGGGTTCAGGTACAAACAATGGAAGAGCAGACCCAGATGGTTGTTGATCAAGGAGAAGTCTAGGCATCTTTCCAGAAGGTGCTTCTTCTGACTCATGCTGGTTTCTCCATTGCTTCAGATGGAAATCCATGGACATGAGAGAGAAAAGAGAGAAAGAGATGGGGGAGTTTTAGTCTCTAGTTACTTGTTGGCCTGGTTGGTTTAATAGCTTTGATCTGTTATGTTGGGTATGTGAAGAGAA | |||||||||