| mature miRNA: TACTTCTGCAAGTGACTTTTG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110404483|gb|EC969611.1|EC969611 WIN093.C21_C17 Cab Sauv pericarp normalized (WIN09) Vitis vinifera cDNA clone WIN093_C17 3', TACTTCTGCAAGTGACTTTTG EST sequence (targeted fragment marked with yellow): GCTTGCATCTGCTGCTGCAGTGGAAAAGGGGATAGTGTTTGACGAAGGCATGGAGGACAGATTATGTGCATACTCACGGGCTGTAAGTCACTTTCCAACAGCGGCTAAGGAGTTCAAATGGAGAAATGGTTGGTTCTATTCACTCTCCCAAAAGGCAATTGCAGAAGGAAAACCAGATCCATGCCCACTACATACAGAATGGCTCAAAGAACTGAAAATTGTCTAGAGAAATCAAAGTTCATCCAATATTTCCCTTCCCATTCAAAACCCAATGCCAAACAGATGCAGATTGCAGCCACATTCAAATGGCAGGTATTCTTAACTGACATGTTGACATCTTGCAAATGCCATGGATTTAGAACAGTTGAGACTAGAGAATGTGGAAGTGATTTATTTTAGTTACATTGAAGGCTTGTAATCTATCTGGATTTTGGTTCTTGGTATTTATCTAAAAAAAAAAA | |||||||||
gi|110380895|gb|EC946196.1|EC946196 WIN0538.C21_A02 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone TACTTCTGCAAGTGACTTTTG EST sequence (targeted fragment marked with yellow): CAGCTCAGTACTAATTCATCATCACCCAGCTTTGAGAATGGACAGCAACTACCGCCGCCGCCAGCGTCAACGCTCATGTCTGCAACGGCACTGCTGCAGAAAGCAGCCCAAATGGGAGCAACTGCAAGTACTAAAATGAATAACTCTCCAACAAAGGGCTTTGTGACAAGCATGGCTCCAACCCCATTTGGTGGGATACTTCTACAGAAGAACAGTAGCTCAAATGATCACCACCTCCAAGCTGATCCAACCCAGTTTCTAAACCAGTTTTTTTATCAGAATGATGGGGCTGAGAGTGAGGTGATGAGCGAAATGGGGATGTTCTCAGGACTGTTTGATCAAAACCATGGACTGTTCAAGAACATGGAGCATCATGAGCATAGCAACAGTAACAACATTTTGGCTGCTAAAACTACAAATCCAGGGTTAAGTAGCACTCCAAGAAATGGAAAAACTGATACGATGACAGTCGATTTCTTGGGGATCGGAGGAGCCCGGCCTGGGAATTTCCATGGACAGCAGCAGCAGCAGCAAGAAATGTTTGAAGGAATGAATATAAACCACCCAAGAATGCAAGGTTTTAGTAGCTTTGAGCAGCACATCGCACATGGGCAAGCAGCAATGGAGAAGACCATGTGGGAGGCTTGAAGTTTTCTCCTTTTTCTTCACTTTGTGATAGTTCTTTAGAACTAAATGTAATGAGTTCTTCTATCTTTATTGTTCTTTCTTTTTTTTCTTTCAATTATGCGAGGAACCAGAAGTGTCTTGCAGAAGTGCGAGGCATGTTGAGAGTTCAGGTGATTACTCAATGAAGATGATAGAAATGGTAGGTTTTATTAATTGGGTTAGTTCAAA | |||||||||
gi|110728806|gb|EE104697.1|EE104697 SBB06491 Inflorescence (VvS11) Vitis vinifera cDNA clone SBB06491, mRNA sequence TACTTCTGCAAGTGACTTTTG EST sequence (targeted fragment marked with yellow): AGTGATGATTCTGCCTCTACTGATCACATCTATGATAAAAAACAAGACTCTAAATTAGAAATTAAACAGAGAGTTGATGAAGAGAATCGCCCTGCTACTGAGGATCCATTTCAGCCATGTAAAAGCAGGACTGGGGGAAGAGCATTCTTGCCATTTAAGGGATACTCGGGTTTTCCGGTGGCCACTGCTAGGAAGGAAGATAAGGATGAATTGCCGGTCCATGGACTTTCTCTTCTCACTCCAGGGATTAAAAATCCCAGGGAAGAATCCGGTTCTAGTGGTTCAAAAACTAGTTGTAGCAGAGGAGTCTCCTCCTCTGCACCCAATCTTCAACCCAATTTACGGACCGGACCACAGCCACCACAGCAGCAGACCGCCCGGAAGCAAAGAAGATGTTGGTCACCTGAGCTGCATCGACGGTTTGTCAATGCCTTGCAGCAACTTGGGGGCTCACAAGCTGCCACCCCAAAGCAGATTAGAGAACTCATGCAGGTTGATGGCCTCACCAATGATGAAGTGAAGAGTCATTTGCAGAAATACAGACTTCATACTCGAAGAATGCCGACTACCTCAGCTGCCCCGCCTTCCAATCAACCTGTTGTAGTATTGGGAAGTCTGTGGATGCCCCAAGATCAGTATGGTGACTCCTCCAAGGCGAGTAGTTCTCAGTCTGCTTCCCCCCAAGGTCCCCTCCAGTTAGGCGGAGCTGCTGGANGGACCTCAACTACAGGTGGGGACA | |||||||||
gi|161714780|gb|FC062699.1|FC062699 sT7aVVM004N12036 VVM Vitis vinifera cDNA clone VVM004N12036 5' similar to emb_CAO23378.1 unn TACTTCTGCAAGTGACTTTTG EST sequence (targeted fragment marked with yellow): AGTTCTTCATGAGCGCTTTGTTGAGTGTGTAAATCGCCTGGGTGGAGCTGAAAAAGCAACCCCAAAAGCCATACTCAAGCTGATGGATTCAGAAGGACTGACCATCTTTCATGTGAAAAGCCATTTGCAGAAATATCGAATTGCAAAGTACATGCCAGAATCTGCAGAAGGGAAATCTGAGAAAAGGGCCAGCACAAACGATTTGCCACATCTTGATAACAAAACTGGCATGCAGTTCAAAGAGGCACTGCAGATGCAGCTTGATGTCCAGAGGCGTCTCCATGAGCAGTTAGAGATACAGAGAAATTTGCAGTTGAGGATTGAAGAACAAGGGAGGCAGCTGAAAATGATGTTTGAACAGCAGCAACAGACGAATAGGAGCTTCATGGAAGCTGAAGAGGACTTGGATATCATGTCACTGGAGGACCCGTCAACCAGTCTGGACCAAGTAGAAAACTTGAGTGCACAGGGGTCTGGGAACACTCGGTTTCCATCAAAGATAAGTTAGACGATCTGAAGGAGATGATTTGATATGATCTTTCTAGATATGTAAAAGCAGCCATTGATGGGGGGATTTATACCAAATGCTCACCCACAGCACTCCCCTCACATGATCAGAATCAAG | |||||||||
gi|110384232|gb|EC948656.1|EC948656 WIN0536.C21_E21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone TACTTCTGCAAGTGACTTTTG EST sequence (targeted fragment marked with yellow): GTAAAAATTCAAATCCGACTGGGGGAAGTGGAAAGCAGCGGCTGCGATGGACTTCGGATCTTCATGACCGCTTTGTGGATGCCATAACTCAGCTCGGTGGACCAGATAGTGGGGGCAACACCAAAAGGTGTGCTAAGAGTGATGGGTGTACCTGGACTTACCATTTATCACGTGAAAAGCCATTTACAGAAGTATCGCCTTGCGAAATACCTGCCAGAATCTCCTGCTGATGGTTCTAAAGATGAAAAGAAAGGATCTGGAGACAGCGGCTCTAGCATGGATTCTGCCCCGGGAGTGCAAATTAATGAGGCACTGAGGCTGCAGATGGAGGTCCAGAAGCGTCTTCATGAACAG | |||||||||
gi|110729952|gb|EE106476.1|EE106476 SCB02740 Inflorescence with GA3 (VvS12) Vitis vinifera cDNA clone SCB02740, mRNA sequence TACTTCTGCAAGTGACTTTTG EST sequence (targeted fragment marked with yellow): CAAGTGAAGATTTGAAGATGCAAGCCAAGCCACCGCATGTATGGTGAGATTAGGTGTGGAGGGCAGCCTGGATCTAATGTTGTTGAGGAGTGGGTGTTGACAACTTGGACTGATGAAGAATGCAAGCTGATCATGAAGAACTGCTACAATGCACTACCGGTGGGTGGAAAGATGATAGCCTGCGAGCCAGTGCTGCCAAAGGAGTCAGACAATAGTCTTAGAACACGAGCCCTCTTGGAAGGAGACATCTTTGTCATGACAATCTACAGAGCCAAGGGTAAGCATAGGACTGAAGAAGAATTTAGGCAACTGGGTCTCTCTGCAGGTTTCCCCCATTTACAAGCATTCTATATCGACTATTTCTATACTGTCCTAGAGTTCCAAAAGTGATTTCCAGAAGTAAAATTCAACACCCAAGGAAATGGAATTCTCACATTGGGAGGCCCT | |||||||||
gi|110382292|gb|EC939087.1|EC939087 WIN058.C21_J01 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone W TACTTCTGCAAGTGACTTTTG EST sequence (targeted fragment marked with yellow): GCCCAAACATTCCCGGTGTGACCCACGTTGGAGGTGACATGTTCAAATCTGTTCCTGATGGCGATGCTATCTTTATGAAGTGGGTGTTGACAACTTGGACTGATGAAGAATGCAAGCTGATCATGAAGAACTGCTACAATGCACTACCGGTGGGTGGAAAGATGATAGCCTGCGAGCCAGTGCTGCCAAAGGAGTCAGACAATAGTCTTAGAACACGAGCCCTCTTGGAAGGAGACATCTTTGTCATGACAATCTACAGAGCCAAGGGTAAGCATAGGACTGAAGAAGAATTTAGGCAACTGGGTCTCTCTGCAGGTTTCCCCCATTTACGAGCATTCTATATCGACCATTTCTATACTGTCTTAGAGTTCCAAAAGTGATTTCCAGAAGTAAAATTCAACACCCAAGGAAATGGAATTCTCACATTGGGAGGCCCTAATCTGTTGCTCAGATTAATAAATCATGCATATTGTGCATCGAAACATTGCAGTAACTGTGGTAAGATGGGGTCATTTGTAGTTATTTATCAATTTCATTACTTGAGCCTTAATTAAAGAGATAGCTAGAAGCTCCTCTTTTAGATTTCAAGGTGTAGTTTTGTACTGATTTTTGAACCCAAAAGCAGTCTTACCGTAACTTTGTTACAA | |||||||||
gi|161709320|gb|FC059649.1|FC059649 sT7aVVM_AER93C08 VVM Vitis vinifera cDNA clone VVM_AER93C08 5' similar to emb_CAO17933.1 unn TACTTCTGCAAGTGACTTTTG EST sequence (targeted fragment marked with yellow): TGGAGTTGAGGCATGCTGAGTTGATCCGGCAGGCTGTGAACTCTGTAAAGATTCAAGACATCAAAGAATTTTCATATGCGCCCCCCAAAACAGATGACATATTCTCCATTTTTGAAGAGCTGAAAAATGGTGAAGCAAATGGGAGAGAGATTGAACCATGCACAAATTACAATCCCCCCACCCATGCTTCCAAAATCCAAAATGGGAATCCTGAGGTCAATAGGTTTAGCAAAAGCCCTTTGCAGAAGTGTCCAAATGGCTTTGTCGATCATAACAGGGTGTTTTAGAAAGAAGATGCCAGTGGCTGGGAAACTGTTAGTCGTGCTGAGGATCAGGGTTCAATTTATTCCCTGGAAGGGAGTGATTACTCCGTCAACAGGTTTAGCCAAGGCCGCAATGCTTCAAGGAGTGGAATAGAATGGGATGAGAATGCAGGTCAAG | |||||||||