| mature miRNA: TAGCTCTGATACCAATTGATA species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110395888|gb|EC961562.1|EC961562 WIN0811.C21_O21 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0811_O21 3', m TAGCTCTGATACCAATTGATA EST sequence (targeted fragment marked with yellow): CGATGGAGGAACTGGAAAAACAACCTTTGTGAAGAGGCATCTCACTGGTGAATTTGAGAAGAAATATGAGCCAACCATTGGGGTCGAAGTTCACCCATTGGACTTCTTCACGAATTGTGGGAAAATTCGGTTTTACTGTTGGGATACTGCTGGGCAAGAGAAATTTGGTGGACTTAGAGATGGTTACTACATTCATGGGCAATGTGCAATTATCATGTTTGATGTTACTGCTCGGTTGACCTACAAGAATGTTCCAACATGGCATCGGGATCTCTGTCGGGTGTGTGAAAATATACCCATTGTTCTTTGTGGAAACAAGGTTGATGTGAAGAACAGGCAGGTTAAGGCAAAGCAGGTTACATTCCACAGGAAAAAGAATCTTCAGTACTATGAGATATCAGCGAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTATCTTGCTAGGAAGCTTGCAGGGGATCCCAATCTCCACTTTGTGGAGTCCCCTGCTCTTGCTCCTCCAGAAGTACACATTGACTTGGCTGCACAGCAACAGCACGAGGCTGAGCTTGCTGCAGCAGCTAGTCAGCCTCTTCCAGATGATGATGATGATGCATTTGAGTAGAGAGAACTGGTGGAGAGGCTTGGGTTCTACCTTTTTGCAATGATTTAATGCTTCCTTTATTATGCATCGTTCGCTTACCAAGTTTTAGCCATATATATAAGTGGATTTGATCATTAGGATTTGTTCTAGTATTGAAGAACGTGGATCATACTAGTTAGGTTTTCTAAAACTATTATTGAGTCTATGGTTGTGTTTGCTTGTGGTAGAGTAATATTTTTGGCTATCATATTGGTGGTGTTGTCAATTCTTATCAAAGCTATCATGCACCAGTCTAAAAAAAAAAAA | |||||||||
gi|110716631|gb|EE091782.1|EE091782 S7B01378 Berries 14mm with GA3 (VvS7) Vitis vinifera cDNA clone S7B01378, mRNA sequence TAGCTCTGATACCAATTGATA EST sequence (targeted fragment marked with yellow): CTCGGTTGACCTACAAGAATGTTCCAACATGGCATCGGGATCTCTGTCGGGTGTGTGAAAATATACCCATTGTTCTTTGTGGAAACAAGGTTGATGTGAAGAACAGGCAGGTTAAGGCAAAGCAGGTTACATTCCACAGGAAAAAGAATCTTCAGTACTATGAGATATCAGCGAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTATCTTGCTAGGAAGCTTGCAGGGGATCCCAATCTCCACTTTGTGGAGTCCCCTGCTCTTGCTCCTCCAGAAGTACACATTGACTTGGCTGCACAGCAACAGCACGAGGCTGAGCTTGCTGCAGCAGCTAGTCAGCCTCTTCCAGATGATGATGATGATGCGTTTGAGTAGAGAGAACTGGTGGAGAGGCTTGGGTTCTACCTTTTTGCAATGATTTAATGCTTCCTTTATTATGCATCGTTCGCTTACCAAGTTTTAGCCATATATATAAGTGGATTTGATCATTAGGATTTGTTCTAGTATTGAAGAACGTGGATCATACTAGTTAGGTTTTCTAAAACTATTATTGAGTCTATGGTTGTGTTTGCTTGTGGTAGAGTAATATTTTTGGCTATCATATTGGTGGTGTTGTCAATTCTTATCAAAGCTATCATACACCAGTCAGTTAACTTCAACAGTAAAAAGAAAAATTTTGAATGTCCAATCTTGAGTTTCCTCTTGTATTGAAGCAATTTACAGACACCCGAACAAATGCATGATGCTGTTGCTGTTTCTTGCA | |||||||||
gi|110715133|gb|EE092838.1|EE092838 S7B04268 Berries 14mm with GA3 (VvS7) Vitis vinifera cDNA clone S7B04268, mRNA sequence TAGCTCTGATACCAATTGATA EST sequence (targeted fragment marked with yellow): AGAGCAACTACAATTTTGAGAAACCTTTCTTGTATCTTGCTAGGAAGCTTGCAGGGGATCCCAATCTCCACTTTGTGGAGTCCCCTGCTCTTGCTCCTCCAGAAGTACACATTGACTTGGCTGCACAGCAACAGCACGAGGCTGAGCTTGCTGCAGCAGCTAGTCAGCCTCTTCCAGATGATGATGATGATGCGTTTGAGTAGAGAGAACTGGTGGAGAGGCTTGGGTTCTACCTTTTTGCAATGATTTAATGCTTCCTTTATTATGCATCGTTCGCTTACCAAGTTTTAGCCATATATATAAGTGGATTTGATCATTAGGATTTGTTCTAGTATTGAAGAACGTGGATCATACTAGTTAGGTTTTCTAAAACTATTATTGAGTCTATGGTTGTGTTTGCTTGTGGTAAAGTAATATTTTTGGCTATCATATTGGTGGTGTTGTCAATTCTTATCAAAGCTATCATACACCAGTCAGTTAACTTC | |||||||||
gi|110362159|gb|EC925675.1|EC925675 WIN029.TB24_K18 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA cl TAGCTCTGATACCAATTGATA EST sequence (targeted fragment marked with yellow): AAGAGTATGTTATAAATTGTCAATCCAAATCTAATAGCTTAAACTTTTGGGAAAATTAGTTACTTATTAAATGGTATTAGAGCTCTGGTTAACTAGAGGGCTAGGCTAATTGGTTACTGCCACCTGTGCCTCCCACGTGCAGGTAGGGGGCTGGTTGCATGCCAGCGAGTCCAAGTCCTAATACTTAAACTTTTAGTAAAATTGGTTACTCAACAATTTTCAAGACAACATTTCTAATGATCTGGTTCTTTTCATGTGGAAAGGATGCTGGAGAAGGGATTGGAGGAAGGGAGATGGTCCCAAAAATTTGTTTCTCGGTGTGCAATCTCACTCGGATGGTTCTTTCATTCTAATTGTACAATTCACTGGAGACTTGGTCGTTGCATCTCCTGATGTTTTCCAAGTAGCTCTTGGATCAGATGCAGAATTTTTACTGTTAGCATCTGATGGCTTATGGGATTATATGAACAGCTCAGAAGCGGTAACCTTTGTTAGGAATGAACTTCGACAACATGGAGATGTTCAGGTAGCTTCTGAAGCACTTGCACGTGCAGCACTGGACCGACGCACACAAGATAATGTCAGCATCATCATTGCAGATTTAGGGCGGACAGACTGGCAAAGTTTGCCACTGCAGCAACAAAATTTATTTCTCGAATTGGTGCAAGCTCTTGGTACCATTGGCATTGTGACGCTTGGGATTTGGATGTCATCTCAGTTTAGTTTATGAAGCTGACGTCTCCTGTTGATGTATATAAAATCAACACACATCCTCTTCAACTTTGTGTCTATAAGTAGTAACCTGTAACTGTACATATCTCACTACTTTTAT | |||||||||
gi|110401237|gb|EC967840.1|EC967840 WIN0826.C21_A19 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0826_A19 3', m TAGCTCTGATACCAATTGATA EST sequence (targeted fragment marked with yellow): GCTTTTGTTCTCTTTGAAGAACACTCCCGGCCACTCACGCACACACTCCACTTTGGACTGAATTTTGGGGATTAAAGGGAAGAGCTCATTGATCGTTCATCCTCGGAGCATCACGCACCCGGAAAGCAGATTATTGGACATCAAAGGTAGCAGAAATGGCTTCCCAAAGCACGAACCAAGGTAACGGATGAATTTTGCTATTAAATGCATGCTTAATTGTCATCATGTGATCCTATGCGTTTTAAATTCTCATCAATTGGTATCAGAGCTATGCATGATTGACATTTGAGCTGCAATTTTGGGTTAATTTTTGGGTTTCCCGTTTCCTGTGGTGGAAGCCATTTTTTTGGAATTTTATTTCTCGTTTGATGTTGATTCTCTGTTTTCAAGCCCGATTGTTGTTGGAAACTTGTAGAGAATGTTGTTTGGAGCAAAACCCATCAAAATTTGTGATTTTTGGAGCTCATTTGATGATATTTCGAAAATTAGGGCTTGTTTGGTTCTTGCTATTATGCGTTTTTTGTGCAATTTTTGGGTTTGGATTGATGAATTGATGTTTTAGGATGGAAATCTATGTATTTTTGACGAAAAATGCGTGAAATTTTGGGCGGAAAAATTTTTTTTTTTTCTTCTCCAGAACCAGGCCGTGCTCAGCTGGAGGAGAAGATGAACAGTGACGTGATGACGTCATCATGACGTCATAAAAAAAAAAAAAAA | |||||||||
gi|110697271|gb|EE074111.1|EE074111 C4B03138 Berries veraison stage (VvC4) Vitis vinifera cDNA clone C4B03138, mRNA sequence TAGCTCTGATACCAATTGATA EST sequence (targeted fragment marked with yellow): GCTGAGCTTGCTGCAGCAGCTAGTCAGCCTCTTCCAGATGATGATGATGATGCATTTGAGTAGAGAGAACTGGTGGAGAGGCTTGGGTTCTACCTTTTTGCAATGATTTAATGCTTCCTTTATTATGCATCGTTCGCTTACCAAGTTTTAGCCATATATATAAGTGGATTTGATCATTAGGATTTGTTCTAGTATTGAAGAACGTGGATCATACTAGTTAGGTTTTCTAAAACTATTATTGAGTCTATGGTTGTGTTTGCTTGTGGTAGAGTAATATTTTTGGCTATCATATTGGTGGTGTTGTCAATTCTTATCAAAGCTATCATGCACCAGTCAGTTAACTTCAACAGTAAAGGGAAAAATTTTGAATGTCCAATCTTGAGTTTCCTCTTGTATTGAAGCAATTTACAGACACCCGAACAAATGCATGATGCTGTTGCTGTTTCTTGTCATCCTTCCTAAATTACTATCCATGCATGTTTTATATCCATGACCTGCCACCACTTAAGTCAACACATTTTATTTGTACACCAGCTGCTACTTTGTCATTTATTTTCTGCTGTAAGTTCTTTAATATCTC | |||||||||
gi|110689805|gb|EE066351.1|EE066351 C2B06810 Buds/little clusters (VvC2) Vitis vinifera cDNA clone C2B06810, mRNA sequence TAGCTCTGATACCAATTGATA EST sequence (targeted fragment marked with yellow): CGTATACAAAGCTAGGGATACTTTGACAGGGAAAATTGTGGCATTGAAGAAGGTAAGATTCGACAATTTGGAGCCAGAGAGTGTAAAGTTCATGGCTAGAGAGATTCATATTCTAAGACGGTTGGATCACCCAAATGTGGTAAAATTGGAAGGTTTAGTGACTTCAAGGATGTCCTGTAGTCTATACCTTGTATTTGAGTATATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCAGGGATCAAGTTCACAGAACCTCAGGTCAAATGTTACATGCATCAATTATTATCAGGGCTAGAACACTGTCATAATCGCAATGTGCTGCACCGTGATATTAAGGGGTCAAATCTTCTTCTTGACAATGGAGGAGTTCTCAAGATTGCTGATTTTGGTCTGGCTTCTACTTTTGATCCTAATCATAAGCAGCCCATGACTAGTAGAGTGGTTACTCTATGGTATCGGCCACCGGAACTGCTTCTTGGGGCCACCGAATATGGTGTAGGTGTGGACCTCTGGAGTGCTGGCTGCATTCTAGCTGAGTTATTGGCCGGGAAGCCTATCATGCCTGGTCGCACCGAGGTGGAGCAGCTACACAAGATATTTAAGCTATGTGGCTCTCCTTCTGAAGAAACTGGAAAAAATCAAAGTTGCCGCATGCAACCATATTTAAGCCTCAACAATCATACAAGCGATGCATAGCAGAGACCTTTAAGGATTTTCCAGCATCATCATTGCCCCTAATTGAGACACTTCTTGCAATTGATCCAGCTGAAC | |||||||||
gi|110362419|gb|EC925952.1|EC925952 WIN0210.TB24.1_J13 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA TAGCTCTGATACCAATTGATA EST sequence (targeted fragment marked with yellow): ATGTGATCCTATGCGTTTTAAATTCTCATCAATTGGTATCAGAGCTTGCATGATTGACATTTGAGCTGCAATTTTGGGTCAATTTTTGGGTTTCCCGTTTCCTGTGGTGGAAGCCATTTTTTTGGAATTTTATTTCTCGTTTGATGTTGATTCTCTGTTTACAAGCCCGATTATTGTTGGAAACTTGTAGAGAATGTTGTTTGGAGCAAAACCCATCAAATTTTGTGATTTTTGGAGCTCATTTGATGATATTTCGAAAATTAGGGCTTGTTTGGTTCTTGCTATTATGCGGTTTTTTGTGCAATTTTTGGGTTTGGATTGAAGAATTGATGTTTTAGGATGGAAATCTATGTTTTTTTGACGAAAAATGCGTGAAATTTTGGGCGGAAAAAAATTTTTTTTTTTTCTTCTCCAGAACCAGGCCGTGCTCAGCTGAGGAGAAGATGAACAGTGACGTGAGACGTCATC | |||||||||