| mature miRNA: TCACAAGTTCATCCAAGCACC species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110411058|gb|EC976758.1|EC976758 WIN1032.C21_H02 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA TCACAAGTTCATCCAAGCACC EST sequence (targeted fragment marked with yellow): GTTTTAACCATCAATAATGTTTATGATTGATTTTAGGCCGGCACAGCCCACACTTTCATCCCTAGCAGATCCGAACGGTCAAGCAGTACCCTGCATCCACCCTTCCGATTAACATCGGTTCGATTCCACTCCACCTACTAGGGTTGGCCGATTGCCATACAAACTGAAAGCATGCAAAGTTATGGTGGATCCATCAACATAGAAGAAAAAACCTTGCAGAACTGAGCTGCCCCTTTGGCTTTACTTTCAAGAACTTAATGTTCTTAGCAAATTCGTCCAAGCACCATCATGAATAAGCCTAGTTTTGAAGAAAATCGTAGGCCTGTTTGAGCTTTAGATGGTGCTTGGATGAACTTGTGAAGATCATCAAAATTCTTCTGCATCAACCACAGCCACAACCACAACCTCAACCACCCCTCTCTTCTCCTCAGTTCA | |||||||||
gi|110383392|gb|EC947763.1|EC947763 WIN0542.C21_K02 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone TCACAAGTTCATCCAAGCACC EST sequence (targeted fragment marked with yellow): GGTTTTTGGTACAAGCCATCTAGTAATGGCTTCTGCGGACCGAAATTACGATGTATTCTTGAGTTTTAGAGGTGAAGACACCCGCAAAAATTTCAGTGATCATCTCTACACCACTTTGATTGCAAATGGAATTCATACTTTCAGAGACAGTGAAGAACTTGATAAAGGAGGAGATATTGCATCTGAACTCTCAAGAGTAATTCAGAAATCAAGGATTTTCATTATCATATTCTCAAGAAATTATGCTACTTCGAAATGGTGTTTAAATGAACTTGTAAAAATCACTGAGCGTATGACACAGAAAGAGTCAACAATCCATCCTGTTTTCTACCATGTGAATCCATCAGAAGTGCGACATCAATCCGGAAGTTATGGAGAGGCCTTTTCCAACTATGAAAAGGATGCAGACCTAGAGAAGGAGAACATAGTGAAGTGGAGGGCTGCCTTGACACAAGTAGGCAATCTATCCGGATGGCATGTGGATAACCAATATGAGTCAGAGGTACTCATAGGAATCACTAATGACATCATCAGAAGATTAAATCGTGAGCCTTTAAATGTGGGCAAGAACATAGTCGGAATGAGTTTTCATTTGGAAAAACTCAAATCATTGATGAACATTGAGTCAAATGAGGTTTGTGTGGTTGGGATATCTGGAATCGGTGGAATTGGTAAAACTACTATTGCTAAAGCTATTTATAATGAAAAAAAAAA | |||||||||
gi|110387675|gb|EC952361.1|EC952361 WIN0555.C21_H02 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone TCACAAGTTCATCCAAGCACC EST sequence (targeted fragment marked with yellow): CAGTTCCTCCCACCTTCTTCCCCACATACCTCCCTTAACTGTTCTCAAAAGATAGCTTAAATGCTAAGCCACTCCTGACTCCTAGCCTGAAGAGAAATCAAGCTTCAAAATCTCTTTGTAGTTTTGACACAGAAAGGAGAGGGAAAAACAACCATGACTTCCACAAACACCCAAATCATCTCTTATTCTCCTCCTCCTCCTCCTTCTTCCTCTTCTAAATCCACCCGTCAATTCGCTTTTGAAGTCTTCTTGAGTTTCAGAGGAGAAGACACCCGCTATGGTTTCACCAATCATCTTTATGAGGCTTTGATTTCCTATGGAATTCACACCTTTAGAGATGACGAAGAAATCAAGAGAGGAGGAGAAGTTGCGTCTGAGCTCCTGAATGCTATTGAAGAATCAAAGATTTTTGTTATCATTTTTTCGGAAAACTATGCTACCTCCAGGTGGTGTCTAGATGAACTCGTGAAGATCTTCGAATGCATGGCAACAAAGCAGCGACTAATTCTACCCATTTTCTATCATGTGGATCCATCAGATGTCCGAAAACAATCAGGAAGTTATGAACAAGCATTTCTTGATCACGAAAGAGAAGCAGATGTGGAGAAAAAGGAGAAGATTCAGAAGTGGAGACTTGCCTTGACAAAAGCAGGCAATCTAGCTGGATATGACCTACAAAAATATCGGTAACTATAATTTCCTTTCATCTTTAATTTCAAAATTTTCTCCTTCAATCTGGGTTGACCTTTTTACTACTCATAAAAATTAGGCCAAGTTGTTATAAAATTTTGTTAAAGCCAGTGAGCATTATAGTTTCCACAAAA | |||||||||
gi|254916595|gb|GR905421.1|GR905421 312j_F12_012 ovule cDNA library of a seedless grape (Vitis vinifera var.Thomson seedless) Vi TCACAAGTTCATCCAAGCACC EST sequence (targeted fragment marked with yellow): GGGGGAAGAGAAATCATGCTTCGAAATCTCTTCTAGTTGTGACACAGAAAGAGGGGAAGAAAACAACCATGACTTCCACAAACACCCAGATCATCTCTTATTCTCCTTCTTCTTCTTCTTCTAAATCAACCCATCAATACACTTATGAAGTCTTCTTGAGTTTCAGAGGAGAAGACACCCGCTACGGTTTCACAGATCATCTTTATGAGGCTTTGATTTCCAGTGGAATTCGCACCTTTAGAGATGATGAAGAACTGGCGAGAGGAGGAGTAATTGCATCTGAGCTGCTGGAAGCTATTGAAGAATCAAAGATTTTTGTTATCATTTTTTCGGAAAACTATGCTGCCTCTAGGTGGTGTCTAGATGAACTCGTGAAGATCAGTGAGTGTGGGCCAACCGAGGGGCGACTGATTCAACAAATTTTCCAATATGTGGGATCCGTACCATGGGCAGGAAGCAAAGCAAGGAGTTATGAAAAAGGCATTTTTTAACAATGAAAAGGAAGGAGAATTAGGATAAAAGGGGGTATGATCTCTAGGGTGGAAAAATAGTAGTGGTGCAAGTGTGGGAAACCAAGGAAGGTATGAGACTCTTCAAAATTACCAAGTCCGGGATATTCTCTCCCTCTTTACTTCCATGCCAAAAACTGTCTCTCATCAAAGAAGGGTACACAGTTTGATGCTTTCTGCTCGCGTACGAGGTAATAGATAGCCGAACGTTTTGTACACCTTTGTTTGTTAGCAGTACCTTACGTAGTTGGCCTGAAACGACATAGCGTTGTAGAATTTTCTTTGTGATTGGTTAACTATAAGTTTTAGCGCGTTGTTTCCGTTTAATTAATAGTATTATGTGGTGGGTAATACGTTGAGGATTAGGATAAATTCGAAATAATTATTATGTTACCTTCTATAATATCATGTAACAGTTATTAGTAGATCTACGTGTATTACTTACACCTGCATTCATCTCACTTCTCCTTTCCATACTTACGCTCATGACTGTCTTGCATACACTGTTACATAATTCTTTGCAACACCATATAAGATAATATT | |||||||||
gi|110366861|gb|EC930779.1|EC930779 WIN0411.C21_H03 Cab Sauv pericarp normalized (WIN04) Vitis vinifera cDNA clone WIN0411_H03 3 TCACAAGTTCATCCAAGCACC EST sequence (targeted fragment marked with yellow): GATCAAAGATTTTTGTTATCATTTTTTCGGAAAACTATGCTGACTCTAGGTGGTGTCTAGATGAACTCGTGAAGATCAGTGAGTGTGGGGCAACCGAGGGGCGACTGATTCTACCAATTTTCTATCATGTGGATCCATCCCATGTGCGGAAGCAAAGCGAGAGTTATGAAAAGGCATTTGTTGATCACGAAAAGGAAGCAGATGAGGAGAAAAGGGAGAAGATTCAAAAGTGGAGAAGTGTCTTGGCAAAAGTTGGCAATCTTGCTGGATTTGATCTACAAAAATATCAGTAACTATAATTTCCTCTTATCTTTCATTGCAACATTTTCTCTTTCAATCGGTTGACCTTTATACTACTTATTAAACTTAGGACAAGTTGTTATAAATTTTATTCTGATAAAA | |||||||||
gi|156723510|gb|EV228302.1|EV228302 VV_PEa02d01.b2 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence TCACAAGTTCATCCAAGCACC EST sequence (targeted fragment marked with yellow): TTTATAGAGGGGGGGGGGCCAGGAATTGCATACGGCCGGNNNGGNTCNNNANNTNCNNNNGGAANANANNNNNGGGNNCCTACCCATGAGGGAGCAGGGGNANANNGANAAAANNAAAATACCTTAAAAAGGAANTGNTGGAANTAAATNNTTATATTGGTGAGGAATATAATTAAATATTTAAAAAGTCCGGGGTTAGGTGATTAATTGAATAAAGATTGGAGGAGGTGGGTGGAATGGAGTTAAATANAGTTGGTGATATGAATGATAGGGGAGTTGGAGATATAAAAGAAGTGAAATATGGTTNTGATTAGGAGTGTGTGTAAAGTTGGATAAGGATTGATGAATTGGAATNAGAAAGAGTGGGGGGGGAAAGAGAAAAATAAGAAAGAGAATGAAAGAGAGAATGAGATGGAAGGTGAGAAGGAGAGAAATGGGAAGGTGGAGGAAGNNTGTTAAGGAAGGGAGTGTGAAAAGGANGTAGTGAGAAAGTGGTAATGTAAGATTATAATGGAGGAATTGAAATATAATTGTAAGTGGAAAGTTGAGTATGAGGGTATTTTAAAATGAATGGTGAAGAGAAAAATAGATAGTGTGAATATGAGAGTAGGATGAATAGAAAATGAGGAAGGATAATGTTGGGAGGGTTTGGATGAAATTGTGANAGATTGTTTAGGTATAATAAGAAAATAGAGGGTGGTTGTAAGAAGAGATTATGGAAAAAATTATATTGATGGAAGGGGTTTAAGGAGAGTGTTGAAAAATTGGGGGTGGATGAGGAGGGAAGATTGGTGGAGATATTATAATATTTGGGAGATTTAGATTAAAGGATAGAATTTAGAGTGGGTTAAAATATTTAGGTGGGGGAGAGGAAAATTTGAAATAAAAATTTGGTTAGAATAGAGGAAAATTANGAAGAGGAAATTGGAATTAATTAATGGGGAAAATTTGGTGGAGAGATAAAAAGTGTGAGGAAGGGGTTTAAAATTTGAGAGTGGGTATTTGGTAAATAGTAAAATTGAGGGGATAAGAAGGGAATGAAAGGAAATTGTTGGGGTGGTGATGTAGGGAAGGGGTGTTTAGAAGATAGAAGGATTGATGATTTTGATGAGAGATAAAGGGAGAGAGAGGATTTTTTGAGGTTATATAGGAAGGGGAGAGAAAAATAATAGATGAGAGGAATAGAAGATGTGTGGAGGTGAAATATATTAGAGAAGGAAAAATAGGAAGTGGATGAGTTGTGGTGAATAAAAGAAGAAGAAGTATTAGGAGG | |||||||||