| mature miRNA: TCATTGAGTGCAGCGTTGATG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|254916038|gb|GR903896.1|GR903896 169g_E08_010 ovule cDNA library of a seedless grape (Vitis vinifera var.Thomson seedless) Vi TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): GGGAAACCCCGCCCATTGGTGGTTTGGTACCCGGAGAATCGGCCATTACGGCCGGGGTCTCTCCTGGGGCAGATATGTGCATTTACTTTCCATACTCTGATGTTGAAAAAAGACTTACTGCCCTGCATGGTTCAATTGAAAAGCTCTTATATGATCCTGAGCAGAATGAAGAACACATTGGTATGCTGAATGATCGGTCAAAGCCCATAATCTTTTCCATGGCAAGGCTTGACCAAGTGAAAAACATTACTGGGCTGGTTGAGTGCTATGCTAAGAATGCCAAACTGAGGGAAATGGCAAATCTGGTTGTGGTAGCTGGTTACAATGATGTGAAGAAGTCAAATGACAGAGAAGAAATTGTAGAAATTGAGAAGATGCATGACCTTATGAAGGAGTACAACTTGCATGGCCAGTTCAGATGGATGTCATCCCAAACAAACCGAGCACGTAATGGTGAACTCTATCGCTACATTTGCTGACACAAGGGGTATTTTTGTGCAGCCCGCCCTTTATGAAACTTCTGGACTTACAGCAGTGGAGGCAATGACTTGTGGCCTTTCCTACATTTGCCACCTGCATTGGGGGGTACTGCTGAGATATTTGTAAAGGGTGATATCCTGATTCCATATTGGTTTCCACGTACACCGGATGAGGGTGAAAATACCTGGGGGGACATCTTCACAAACCGGCATGGGGGATACTCCTCGTCCATTCTAATCATTCATCCATCAACTTCCACCATCGACAACGTCTTACACAACCAACCAACCACACAATAATTATAATTCACACAGGCCACATGAGACATCTAGCGTCAATTCCTTATGGCTTAAGGAGATAGAGATGCCTGTTAATTTTGTTCATATTAAAATGAGAATCAACATACTTTCCTACTTGAACTTTCTCTGTATATACTCTTAACATGACTATGGAAGCCTAATCCGTATTGCTAGCCGTTGCTTAGGTATATATGGGGTGAGAGTACAGTTGCAGACAGCATCGACTGTGCACTCAATGGTGTGGGAGCTCTACTCTGAGATAGACTGCTAANATGTCATCAACTCAGCGCGACTATTCTATAGATATAAATATCAATCATTCATGAAAATTGTC | |||||||||
gi|161716400|gb|FC064913.1|FC064913 sT7aVVM011F03012 VVM Vitis vinifera cDNA clone VVM011F03012 5' similar to emb_CAN74557.1 hyp TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): GTGGAATGACGATGCGGAAGAAGTGGAAAGAGAGATGATGAGGACTGGAGATGGGCCCAAGATCTCAGAAGCTTACACCATTAATGGCATGCCTGGACCCCTCTATCCCTGCTCTAAAAAAGATACTTTTATCCAGAATGTGGTTCCTGGCAAAACCTACTTGCTTCGTATCATCAATGCAGCACTCAACGCTGAGCTTTTCTTCGCCATTGCTAATCACACATTGACTGTCGTAGAGATTGATGGGTTGTACACAAAACCCTTTACAACCACAGCCATTATGATCGCTCCTGGACAAACCACCAATGTTCTGCTCACAGCGGATCAAGTTCCCGACTCTTCTGCCATGTTTCCCATGGCTGCAAACAATTATGTCACCTCCATTTTTCCATTCGATAATTCAACCACAATGGGCTTCTTACGCTACAAAACTATCACAACCCCAAGAGCGAAACCCCTAAACAGACCAGCTGTATACAGTCTCTCATCACTTTACAATCTTCCTCAAATGAAAGATACAGCTTTTGCCACTGCATTTTCCAGCAAGCTCCGAAGCCTTGCTTCTGCTCAGTACCCATGTAACGTGCCCAAGACTATTGATAAGCGAATAGTGACCACCATAAGCCTAAC | |||||||||
gi|156736410|gb|EV240524.1|EV240524 VV_PEd0013a11.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): CCTGCAGGCCCCCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTGCAATGGCTGAATGCCTCCCTAATGATCCCTTTCCTCAAACAAATTATTACACTTTACCTTTGTAATCACATTTCTAAGGGAAGCCGTATTGTGCAAAAACCTGGTTTCATGGGATAGTGTCAAATTTCAAATGGCGCGGGCGTTATCATCTTTTACAAGGGCGTGCAAAACCAACTCTCAACCACCCGCCTCAAAGAACATCTGTTATTATTATTTTTTTTTTTCAAAAAAAAAAAAATTCTTTGTTTTCATCTTGTATGATGAGTGAGCTCGCTCTTTGGGATCTCTTCATTTCTACAACACATGGAAGGGGCTTGGCTATATCAACTTGATAAGCGTCCATCCGTGCAAATGTGCCTTCCTTGGATCACTTGGTTCCAGCATATCATGGTAGAGGCAGACGAAGCCTTTATAGTATGCTCTCTACATTGACTGCTAAAGCAGATCCATCTCATTGTAATGAACTGGGATGACCTGCACATGTTGGTTCATAGTCTCGAAAAAGTTCAACTTGATGAACTTAAGATATAATTGGGTCTAACCCATAACTCAGCTCTGGAACTTGCTGAAGCCTCTGTCTAACTTTAAGTATTCCAGTGCCCAGTTGCATGGGTATACCCATGATTATGCATTCACTTACTCTTTCAATCTTGTCATCTCTACCACTTACAAAAGCATTGAAAAGTGATCTGCTGTCTTCTCAAATGAAGCCAGCATCAATACACTTTTGTCCATTTTTTGATGCCAATNCTGTGATCCCTAGAACTCACCTCTAAATGTCATCAAATCTGCTAAAACATCATATGTCGTATATCTATGCTCATCCCATGGCTTGCATGGTAACTGTATCTCATTATGATGCACTTTCTGCAGCTTCAATCCAATGTCGCTGCACTCAATGAAATGATACTGGTGTTTCACTCCATAACTCCTCATGCCCATGACATTTGAAACCGTGTTTGTACTTTGTATCACACACGTCACATTTCATCCTTTAAACACGTGGAGCAATTTAGAACTGAGTCAAATGATGACTCTTACCTAAGAGAATTCACTTCAGCTCAAAC | |||||||||
gi|110691962|gb|EE070664.1|EE070664 C3B05193 Clusters 4 cm (VvC3) Vitis vinifera cDNA clone C3B05193, mRNA sequence TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): ATCTTCTTGGTTTCTGTCTGTGTTTGAATTTTACAGCCCCAACCTTAAACATGTTTCTCACCCTGTTCTGGATTTGATGTGGGGGTTCATCTGAAAAAGCTGTTTATTTGTAGTTGTAATGATCTAACAGCAGATAGAGAGTCTGGCCTCAGACCCCCTTTTTTTAATCATACCAAGCCGCCTTTTAAAAGAAGAAGAAAAAAATCTGGTTGTTGCCAAGTTTCTTTTAGGGTTATAATTTCAGAACCATTTAATTGGGTCTTTGATTTGGTGCTTTTGAGGCATATAAAGCTGGAAAAGCATATTTGATCATGAACATGGGGTGGTTGTCAGTGGCATATGGGTTGGTTTCAATGTTTTCATTGGTGGTGCATTCAATGAATGACATTGGTGCCAAATGGGGGACACACGAGACCAACCCTTTGCCTCCAGAAACTGTACTGGATCTGGTGACGTACAATGGTATCAAAGAAGTTATACTTATTGATGCTGATTACGGAATCTTGAAAGATCAAGGAAAAACCTCGAATTATATTAAGTTTAAATCCCCATAAATAAGCTTGCCTCTCCGAGCTGGCCNAGTTAAACATACTAGACAAACGATTCCTCTCTTTTTTTCTGGACAAAAGAAAACCTCAAAAGTTATCCTCTTATTACTAGCTAAATGTTATAATAATTTTCGTGGCCAATTTTAATGGAATAATATACCATGAACAATCTTAACTCCTTCTTAATTCATTAATATGACA | |||||||||
gi|294967220|gb|GW840095.1|GW840095 Summer_Black_3492 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): GGGGACGAGGGATTGGTCTTGAATGTTGTGGAGGCTGAGAAACCCAAAAAAGTTCTTATTTTGATGAGTGATACTGGTGGTGGTCACCGAGCTTCTGCGGAAGCTATTAAGGCGGCATTCAATGAAGAATTCGGGGAGGAGTATCGGGTGTTTGTTACTGACTTATGGTCAGATCACACCCCTTGGCCATTTAATCAATTGCCCAGGAGCTATAACTTCTTGGTGAAACATGGCCCCCTGTGGAAAATGACCTATTATGGAACTGCTCCACGTTTGGTGCATCAATCAAATTTTGCTGCAACTACTACATTTATAGCTCGAGAGGTTGCCAAAGGACTTATGAAATACCAACCTGACATTATTATTAGCGTACATCCTCTGATGCAACATGTTCCACTCCGTATTTTGAGGGCAAAGGGCCTTTAGAAAAAGATCGTCTTCACAACAGTAGTTACAGATTTAAGCACTTGCCATCCTACATGGT | |||||||||
gi|110721624|gb|EE098838.1|EE098838 S9B03518 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B03518, mRNA sequence TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): TCATGCTTTGTATGGCATACAAAACAAAACTAGGGTCATGACGCCCTTGCTACTCGGAAGACAGTAGTAAGTCCCGTTTGGACTGCGAGAGAGTGAAAGAAGGGAGAAGAGGAGACAAGATGGCAGTGGGGGGTTTCGCCGTTGACGACAATTCCAGGGCCTTCAGTGGCAAGGTAACAGCGTCGGTGGTGATCACCTGCATCGTTGCCGCATCTGGTGGCCTTATTTTTGGGTATGACATCGGAATTTCAGGAGGTGTAACAACGATGCAACCCTTTCTTAAGAAATTCTTCCCGGTGGTACTGAGGAAAGCGGCGGACGCCAAGACCAACATATACTGTGTGTATGACAGCCACGTCTTAACAGCATTCACATCCTCACTGTACATAGCGGGGTTAGCAGCGTCCCTGGTGGCTAGTCGCCTCACCAGAGCAGTGGGACGTANAAACACAATGATAATTGGTGGTTTGACTTTCCTGATTGGCGCTGCACTCAATGGGGGGGCGAAAAATGTTGCAATGGCAATCATTGGGCGGAAAAGAGCAGGGGGATGGGGGATGGGTGCAGGAGAGAGGAAAAACAGAAGAAGAGGGAAA | |||||||||
gi|110374512|gb|EC939321.1|EC939321 WIN059.C21_E03 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone W TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): GGTTGCGTTCCATCTAACCAATCCATGGAGTGAAGAAGCAGTCAATACAAGGTACGCGTTTTACTTTTACCACTACTTTATTGTTCTTATCCTAAGGGTTTTTTTCTCAGCAACCAAACAGAAAGAGCATTAGTCGTCGTGTTCGATTCTTACTCCGACAATTTAAACGCTGCATTTAATGAATACCACTTCCTCTTTCCTTTCTGGGCCTTTACCTAATACTTGGAGGACTGTTGAAGTCATCATTTTTCCGCATTTTCAGTCTACCATTTCTCATAAATTTTACCCAATTTGGTTGTGGTGACTCCTAATGAAACCAGTAAATTGCCCAATTAAGAAGCATGCTCCTTCATGGGTGTGGCAAAGTAAATGTGTACTTCAATGATATGCGATTGTCATGTCTTTAGATGTGTAAGAGAGGTTTTAAATTGAATTGATTTAGTTGTTTCTTGCTCATGGTAGTTTTCTTCTTTGTTTAAATGTGCGTCTGTATTTGTATAAAAACTGCAACCAGTTTTAGGATGTAGGACTATGCGGTTTGTGCAATTGAATAGATATATAGGTTGTATATAGGCGTTGCCTGAATGTTCTTGTGTATAAGTTTTGTGATTCAAGTGACCAAATTTCAATTGATTTAAAAAAAAAAAAAAA | |||||||||
gi|122691502|gb|EC979165.1|EC979165 WIN111.C21_B22 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clon TCATTGAGTGCAGCGTTGATG EST sequence (targeted fragment marked with yellow): GAGCAACTGAAGCAAAAACATTGGAGACACCTAGATAGAAGAAAACATCATTGAGTGCAGCGTTGATGAAACTGAAGTATTCCATTTTTCAGCTTCTTTGAAGTCCGGCAAGATGGGTTCTGGTTGATTCCATTGGCGCTGCACTCAATCATGTCTTTTTTTGGCTATTCTGGTACAATCCTGCATCAGCACAATATCAAGTATAAACAGGACAACTTCTCTCTGTTGCTGCATCTGTTTTCTTTCCATAATATGTTTCCTTCATTCCTTCCTTCCTTCCTTTCATTATGAAATCATAATTTTGTTTTCCAAAAAAAAAAAAAAA | |||||||||