| mature miRNA: TCGATAAACCTCTGCATCCAG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110701016|gb|EE078177.1|EE078177 S2B11508 Buds (VvS2) Vitis vinifera cDNA clone S2B11508, mRNA sequence TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): CTCTCTTAGAAGGGCGTGGATCGAGAGCTTCAGCAATGGTCTTTGTCAAAGCTCAAAAGTCCAAGGCTTACTTCAAGAGGTACCAAGTTAAATTCAAGAGAAGGAGAGAGGGAAAGACTGACTACAGGGCTAGGATTCGCCTGATTAATCAAGACAAGAACAAGTATAACACTCCGAAATATCGCTTTGTTGTGCGATTTACTAACAAGGATATTATTGCCCAAATAACATCCGCTAGCATTGCTGGTGATATAGTCCTTGCTTCTGCATATTCTCATGAGCTACCTCACTATGGACTTGAAGTTGGTCTGACCAACTATGCTGCAGCTTACTGCACTGGGCTTCTCTTGGCTCGCCGTGTCTTGAAAATGCTTGAGATGGATGGTGAATATGAAGGCAATGTGGAGGCAACTGGTGAGGATTACTCTGTTGAACCCACAGATAGCAGGAGGCCATTCCGTGCCCTTCTTGATGTTGGGCTTGTGAGAACAACAACTGGCAACCGTGTTTTTGGTGCTCTGAAGGGAGCACTGGATGGTGGCTTGGACATTCCTCACAGTGACAAGAGATTTGCTGGATTCTAAAGGATAGCAAGCAGCTTGATGCCGAGGTTCATCGAAAGTATATTTATGGTGGCCATGTTAGTGCATATATGGGGACTTTGATAGAAGATGAGCCAGAGAAGTACCAATCTCACTTCAGTGAATATATTAGGAAAGGAGTTGAGCCAGATGACATTGAGGAGATGTACAAGAAAGTTCATGCTGGCATCCGTGCAAACCCAATTCAGAG | |||||||||
gi|110715670|gb|EE093983.1|EE093983 S7B05486 Berries 14mm with GA3 (VvS7) Vitis vinifera cDNA clone S7B05486, mRNA sequence TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): CTAGCCGCTTCTCTCTCTCTTAGAAGGGCGTGGATCGAGAGCTTCAGCAATGGTCTTTGTCAAAGCTCAAAAGTCCAAGGCTTACTTCAAGAGGTACCAAGTTAAATTCAAGAGAAGGAGAGAGGGAAAGACTGACTACAGGGCTAGGATTCGCCTGATTAATCAAGACAAGAACAAGTATAACACTCCGAAATATCGCTTTGTTGTGCGATTTACTAACAAGGATATTATTGCCCAAATAACATCCGCTAGCATTGCTGGTGATATAGTCCTTGCTTCTGCATATTCTCATGAGCTACCTCACTATGGACTTGAAGTTGGTCTGACCAACTATGCTGCAGCTTACTGCACTGGGCTTCTCTTGGCTCGCCGTGTCTTGAAAATGCTTGAGATGGATGGTGAATATGAAGGCAATGTGGAGGCAACTGGTGAGGATTACTCTGTTGAACCCACAGATAGCAGGAGGCCATTCCGTGCCCTTCTTGATGTTGGGCTTGTGAGAACAACAACTGGCAACCGTGTTTTTGGTGCTCTGAAGGGAGCACTGGATGGTGGCTTGGACATTCCTCACAGTGACAAGAGATTTGCTGGATTCTCAAAGGATAGCAAGCAGCTTGATGCCGAGGTTCATCGAAAGTATATTTATGGTGGCCATNGTAGTGCATATATGGGGACTTTGATAGAAGAGAGCCAGAGAATACCAATCTCACTTCAGTGAATATATTAAGAAGGAGTTGAGCAGATGACTTTGAGGAAATGTACAAGAAGGTCATGCTGCCAT | |||||||||
gi|110706484|gb|EE082049.1|EE082049 S4B03086 Fruits 2-3 mm (VvS4) Vitis vinifera cDNA clone S4B03086, mRNA sequence TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): CTGAAACTGACTTAAACCCGCTTAAAATTAAATTGATGAGAGATTGAAATCCTAGCATTTGATGGAGAGGTTTATCGTGCATTGGAAATACGAAAGCTGATTGATCCCGCTCTAGGGTTTGCATGCAGAAGAAGAAAACCCGGGTCTGTGTTCACACAGAAGCATTCAATCTTTCCTTTTCTAAGCGATTCTTTTGGTCGATTGTTCAGAGGCTCCCCTCTGCCAGAGCACAAGACAGAGAAAGAGAAAGAGTAAGGAGGAAGCGAGGAAGATATGAGTTTCCTAATGACAACCCTCAGAGAGAAGAAAGAGGTGGACTCGATCATCAGGGACACCATTGACAAGGTCCTAGTCCTCCGCTTTGGCCGCTCCACCGACTCTGTCTGCCTCCACCTTGATGACATCCTTTCTAAATCAGCACGGGAGGTTTCCAAGTTTGCAACTGTAGCATTAGTGGATATCGATTCAGAGGATATTCAAGTTTATGTCAAGTACTTTGACATAACTTTGATACCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGGGAGTGCAGATCACACTAAATGGGTCGGTGCTTTTGACAGAAAACAGGACTTCATTGATGTTGTAGAGGCAATATTTAGGGGGGCCATGAAAGGAAAGCTGATTGTTACTTGCCCCCTGCCTCCGGAGCGAATACCAAAATACCAGTTGTTATACAGAGACTTGTAAC | |||||||||
gi|110725488|gb|EE102049.1|EE102049 SBB01014 Inflorescence (VvS11) Vitis vinifera cDNA clone SBB01014, mRNA sequence TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): CTCTCTTAGAAGGGCGTGGATCGAGAGCTTCAGCAATGGTCTTTGTCAAAGCTCAAAAGTCCAAGGCTTACTTCAAGAGGTACCAAGTTAAATTCAAGAGAAGGAGAGAGGGAAAGACTGACTACAGGGCTAGGATTCGCCTGATTAATCAAGACAAGAACAAGTATAACACTCCGAAATATCGCTTTGTTGTGCGATTTACTAACAAGGATATTATTGCCCAAATAACATCCGCTAGCATTGCTGGTGATATAGTCCTTGCTTCTGCATATTCTCATGAGCTACCTCACTATGGACTTGAAGTTGGTCTGACCAACTATGCTGCAGCTTACTGCACTGGGCTTCTCTTGGCTCGCCGTGTCTTGAAAATGCTTGAGATGGATGGTGAATATGAAGGCAATGTGGAGGCAACTGGTGAGGATTACTCTGTTGAACCCACAGATAGCAGGAGGCCATTCCGTGCCCTTCTTGATGTTGGGCTTGTGAGAACAACAACTGGCAACCGTGTTTTTGGTGCTCTGAAGGGAGCACTGGATGGTGGCTTGGACATTCCTCACAGTGAACAAAGATTTGCTGGATTCTCAAAGGATAGCAAGCAGCTTGATGCCGAGGTTCATCGAAAAGATATGTAGGGGGGCCCTGTTAGTGCCATATATGGGGACTTTGAAAGGAAAATGAACCAAAAAAAATACAAATCCTCAATTTAGTAAAAAATATAAAAAAGGGAGTATG | |||||||||
gi|161718076|gb|FC067599.1|FC067599 sT7aVVM019E15060 VVM Vitis vinifera cDNA clone VVM019E15060 5' similar to emb_CAO46314.1 unn TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): GTGGATCGAGAGCTTCAGCAATGCGTCTTTGTCAAAGCTCAAAAGTCCAAGGCTTACTTCAAGAGGTACCAAGTTAAATTCAAGAGAAGGAGAGAGGGAAAGACTGACTACAGGGCTAGGATTCGCCTGATTAATCAAGACAAGAACAAGTATAACACTCCGAAATATCGCTTTGTTGTGCGATTTACTAACAAGGATATTATTGCCCAAATAACATCCGCTAGCATTGCTGGTGATATAGTCCTTGCTTCTGCATATTCTCATGAGCTACCTCACTATGGACTTGAAGTTGGTCTGACCAACTATGCTGCAGCTTACTGCACTGGGCTTCTCTTGGCTCGCCGTGTCTTGAAAATGCTTGAGATGGATGGTGAATATGAACGCCATGTGGAGGCAACTGGTGAGGATTACTCTGTTGAACCCACAGATAGCAGGAGGCCATTCCGTGCCCTTCTTGATGTTGGGCTTGTGAGAACAACAACTGGCAACCGTGTTTTTGGTGCTCTGAAGGGAGCACTGGATGGTGGCTTGGACATTCCTCACAGTGACAAGAGATTTGCTGGATTCTCATAGGATAGCAAGCAGCTTGATGCCGAGGTTCATCGAAAGTATATTTATGGTGGCCATGTTAGTGCATA | |||||||||
gi|161717746|gb|FC068154.1|FC068154 sT7aVVM020P05017 VVM Vitis vinifera cDNA clone VVM020P05017 5' similar to emb_CAO46314.1 unn TCGATAAACCTCTGCATCCAG EST sequence (targeted fragment marked with yellow): ATCGCTTTGTTGTGCGATTTACTAACAAGGATATTATTGCCCAAATAACATCCGCTAGCATTGCTGGTGATATAGTCCTTGCTTCTGCATATTCTCATGAGCTACCTCACTATGGACTTGAAGTTGGTCTGACCAACTATGCTGCAGCTTACTGCACTGGGCTTCTCTTGGCTCGCCGTGTCTTGAAAATGCTTGAGATGGATGGTGAATATGAAGGCAATGTGGAGGCAACTGGTGAGGATTACTCTGTTGAACCCACAGATAGCAGGAGGCCATTCCGTGCCCTTCTTGATGTTGGGCTTGTGAGAACAACAACTGGCAACCGTGTTTTTGGTGCTCTGAAGGGAGCACTGGATGGTGGCTTGGACATTCCTCACAGTGACAAGAGATTTGCTGGATTCTCAAAGGATAGCAAGCAGCTTGATGCCGAGGTTCATCGAAAGTATATTTATGGTGGCCATGTTAGTGCATATATGGGGACTTTGATAGAAGATGAGCCAGAGAAGTACCAATCTCACTTCAGTGAATATATTAAGAATGGAGTTGAGCCACATGACATTGAGGAGATGTACAAGAAGGTTCATGCTGCCATCCGTGCAAACCCAATTCAAAAGAAGGTTGAGAAGCAGCCACCGAAAGAGCACAAGAGGTACAA | |||||||||