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mature miRNA: TGAAGCTGCCAGCATGATCTA
species: Vitis vinifera
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|110729782|gb|EE106114.1|EE106114 SCB01358 Inflorescence with GA3 (VvS12) Vitis vinifera cDNA clone SCB01358, mRNA sequence 

TGAAGCTGCCAGCATGATCTA
..|||||||||. ||||.|.|
GTTTCGACGGTTTTACTGGGT

EST sequence (targeted fragment marked with yellow):
CAATTGTGAAGATTCAATAAATCTTCCCTTAACAATTTTTGAGGGAAAGAGGAATAAAAAAATGGGTGGCCCAAGGCAAACTATTAGCTCTGCATCTGAAGAAGATCCTCAGTATGCGATGATGGATGAGAAGAAAAGGAGAAGGATGCTGTCAAATCGGGAATCGGCCAGGCGGTCTAGAATGAAGAAGCAGAAGCTTTCAGAGGATTTGATCAGTGAAGTGAGCAGACTGCAGAATTTGAACAAGGAGATAAAGCAAACAATTGATGCCACTACTCAAGGATATCAAAACTTTGTGTCTGAGAATAATGTTTTGGTGGCTCAAAAGATGGAGCTGGTGGATCGGCTGAATTCTCTGAATTTTATACTTCAAAATGTGCAAGATGTTTATGGTGTGCCCCTGGACATTCCTGAGATCCCAGATCCTTTGCTGAAACCATGGAGCCTTCCTTGCCCATTGCAACTTATCCCAGCTTCTTCAGACATGTTGCAGTTCTGAATGAACCCGAAAACAAACATTCAGTACTGGGTCATTTTGGCAGCTTTGATCTCATCTTAGATCGGTTTGTGTCTTGTTCAACTGTCATTTATTTTCACATGTCCTTTTAAATGTTAGTATGCTAGTTCCAAATCTTGATAATGGAGTTTGTAAACTTATGGGTTCCAATCGTTGTGATGATATCGGATTTTGATCACCATTGGTGACTCTGGTTATGGTATGAATTGGTAACTTTTGGGGGCTTAATCCTTTGTGATATATCAGACTGGT


gi|110727917|gb|EE105228.1|EE105228 SBB07736 Inflorescence (VvS11) Vitis vinifera cDNA clone SBB07736, mRNA sequence 

TGAAGCTGCCAGCATGATCTA
..|||||||||. ||||.|.|
GTTTCGACGGTTTTACTGGGT

EST sequence (targeted fragment marked with yellow):
AGTTATCCAACCCTCTTGCAGATCTGTTTCCTTCAATCTTTCTCTGTTGTGCTTCTGTACTGGCTTTATGTAACCCCATAAATCCCCATTCTGCTTCATTTGAATTTCAATTCCTTGCTATAGAATTCATATAGTTGTAAATATTTTCTTTGTAAGCATCCAATTGTGAAGATTCAATAAATCTTCCCTTAACAATTTTTGAGGGAAAGAGGAATAAAAAAATGGGTGGCCCAAGGCAAACTATTAGCTCTGCATCTGAAGAAGATCCTCAGTATGCGATGATGGATGAGAAGAAAAGGAGAAGGATGCTGTCAAATCGGGAATCGGCCAGGCGGTCTAGAATGAAGAAGCAGAAGCTTTCAGAGGATTTGATCAGTGAAGTGAGCAGACTGCAGAATTTGAACAAGGAGATAAAGCAAACAATTGATGCCACTACTCAAGGATATCAAAACTTTGTGTCTGAGAATAATGTTTTGGTGGCTCAAAAGATGGAGCTGGTGGATCGGCTGAATTCTCTGAATTTTATACTTCAAAATGTGCAAGATGTTTATGGTGTGCCCCTGGACATTCCTGAGATCCCAGATCCTTTGCTGAAACCATGGAGCCTTCCTTGCCCATTGCAACTTATCCCAGCTTCTTCAGACATGTTGCAGTTCTGAATGAACCCGAAAACAAACATTCAGTACTGGGTCATTTTGGCAGCTTTGATCTCATCTTAAATCGGTTTGTGTCCTGTTCACTGTCATTTATTTTCCATGTCCTTTTAATGTTAGTAGCCN


gi|110415249|gb|EC981134.1|EC981134 WIN1111.C21_P10 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo 

TGAAGCTGCCAGCATGATCTA
..|||||||||. ||||.|.|
GTTTCGACGGTTTTACTGGGT

EST sequence (targeted fragment marked with yellow):
GACTTCAAAATGTGCAAGATGTTTATGGTGTGCCCCTGGACATTCCTGAGATCCCAGATCCTTTGCTGAAACCATGGAGCCTTCCTTGCCCATTGCAACTTATCCCAGCTTCTTCAGACATGTTGCAGTTCTGAATGAACCCGAAAACAAGCATTCAGTACTGGGTCATTTTGGCAGCTTTGATCTCATCTTAGATCGGTTTGTGTCTTGTTTAACTGTCATCTATTTTCACATGTCCTTTTAGATGTTAGTATGCTAGTTCCAAATCTTGATAATGGAGTTTGTAAACTTTTGGGTTCCAATCGTTGTGATGATATCGGATTTTGATCACCATTGGTGACTGTGATTATGGTATGAATTGTAAACTTTTGGGGTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA


gi|122691020|gb|EC966215.1|EC966215 WIN0820.C21_F24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0820_F24 3', m 

TGAAGCTGCCAGCATGATCTA
||||.|||||| |||||||||
ACTTTGACGGT-GTACTAGAT

EST sequence (targeted fragment marked with yellow):
GAGAAGAAGCCCAAGAATTGAGGGGGGCCCTGTGCTACAACACGAGGAGGCTATATGTGTATGATCCATCTTATCATGCACCAATAGCAGTTGAAGCTGCCAGCATGATCTAAGCTTTTCTGTTGCCCACCCTTTCTCCAGGAAAGACTAGATCATGTGGCAGTTTCACCTGTTGATGGAAGCATGAGAAACCCTAATAGACTTAAATCCCGTTCCGATCTTCTGATCCGCTTTCAGCAACCCCATTAGGGTTTTTCCTTAGGAAAACCTGAGAAAGGGTTAGTTATCTTCTTCTCTTTGATTTTGGCTCACATATGTGTTTCAAGATTTACTTTCTCTCTCTAGCTATGCCTTGCTTGTTCAATTACATGCTTCTTGTTTATAGTGTTTTCTCATGTTTTCGGTTGTTGTGTTCTTTCTTTCTTTTCTGTGTCATGGTATGTGGAGAATCTTACTTGTAGGAGAGAGATAATGTTAGGGTTTTAAGTGACAGAATTTCTCTGTCTGAACGCGGTTGGTGCTTTTGAGATCCCTCCAAATGCCTTGGTGAGAGAGCTGTAACAGCCTTTTCATAATTTTTTTCATGTATTGTTAATGTCAAATTTAAGTCTCATATGCATTTCTTGGTATTCATGATCTGATCTATTCATATCTATTCAGTTCTCTGGTTGAATGTTTTTCCATCAATTGGGATTGAATCAACAATTCACTGATAAATTAAATTACATATCTGAATATAGATTGAAATGAATAAAAGTAAAACCTTGGATTTGTGACAACTAAAAAACTAAATATTGAATCTCT


gi|294964753|gb|GW838556.1|GW838556 Summer_Black_1953 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence 

TGAAGCTGCCAGCATGATCTA
||||.|||||| ||||||||
ACTTTGACGGT-GTACTAGAC

EST sequence (targeted fragment marked with yellow):
GGGGGAACTTTAGCTGCAGAAGCAGCAGAAGAAGCAGCTCTGTTGTATGATGGAGTATAGGTCTCTCTTTTCCCCATGAGTCTACCCTACTAGGGAGTGCTCTTCTTCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACCTGTTGTTGGTAGCACAAGAAACCCTAATCCTGAAATAAAAACCCTAAGTCCCACTTCTATGCTTACTTTCTCATCTGGG