| mature miRNA: TGAAGCTGCCAGCATGATCTC species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110388746|gb|EC953528.1|EC953528 WIN0558.C21_P24 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone TGAAGCTGCCAGCATG-ATCTC EST sequence (targeted fragment marked with yellow): GAGGAAAGAGAGATATGGCAATTCAACTGAAGCTCCTCTACACATCCACGTTGACGCACAGGAAGCAAGGCAAGCCACCCATCTTCAACATTTCAACACCACCAACTCTGCAGGTCCATGCCTCCTCAAGCAGTGCCCGGCAACTGATAGAGTCCGGGGCAGTCCGGCCGATACTGCCAAAGGATGCAGCCTCTGCTTTGAACTCTGAAGGCTTCATACTCCTGGACGTCAGGCCAGCGTGGGAGAGGGAGAAGGCACGTGTCTCGGGGTCAATGCACGTGCCACTCTTTGTCAAGGACATGGACAACAACCCCATCACTCTGTTGAAGAAGTGGGTGCATTTTGGGTACATTGGGCTGTGGACTGGCCAGAATTTCACCATGATCAATCCTGATTTTGTCGGGCAAGTGGAAATAGCTGTTCCTGATAAGGACGCTAAGCTCCTTGTTGCTTGTGGAGAAGGGCTGAGGTCCATGATGGCAGCTTCAAAGCTACATGGAGGAGGATACAGGAACTTGGGGTGGCTGGCAGGCGGATTTAACCGGGCCAATGATGGTGATTTTCCTGATGTCGAAGGGACTGAGAAGCTGCAGTATGCCACAATAGGGGGTGTGTCCTACTATTTCCTTCAATTGCTTATACTCCTGCAAGCTGTGGGTGAAAGAAGTTGATCATAAACTGTCAAGACATTCTTAATTGTTGTTCTTGAATCAAAGGAATGAAAGCTGCATCTGTTTTATTAAAAAA | |||||||||
gi|110381228|gb|EC946550.1|EC946550 WIN0539.C21_A09 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone TGAAGCTGCCAGCATGATCTC EST sequence (targeted fragment marked with yellow): GGCCGAACATTTGTCAAGGTTTACAAATCGGGATCGGTTGGGCGGTCATTAGACATCACCCGGTTCAGCAGCTATCATGAACTGCGAGAGGAGCTGGGTCAGATGTTTGGAATTGAGGGGAAACTAGAAAACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCATGGGAGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGTGCAGAAAATGGGGAAACAGGGGATTGAATCAGGATTCAGCCCAAATAGTGCTCAAAGGATGAATAGCAGTGGAACTGATGATCGAGACCTTGTTTCTGGACTACCCTCTGCTGGGTCGCTTGAGTACTGAGAATGCATGGAAAATCAGTTCTATAACACTCCAGAGTCATTGCTTCAAGTCCTACTCTTGGGAGTGAAATAAATGTCTTGTATGCATTTTGTCCGGGATTTCCACGTTATGGTGTGTGCCATTTCTCTCCTGTCTGTTTGCTGTGCACTTGTCTGTACAAGTACTGTATACAACCTGTATCACCCATGCTACTTAGTTATTGCCATGAATGGGTTTCATATATTAAAAATGTGTAGGATCAGGACTTAGAGATTAGATTTTATTGGAAAATGATAAAACATTTCTTGCCAGCCTAGGCTTATGGGAACTAAGCTATTGAATGACACCCTTGTTAAGGTATCGCTAAAAAAAAAAAAA | |||||||||
gi|110369112|gb|EC933258.1|EC933258 WIN0417.C21_M08 Cab Sauv pericarp normalized (WIN04) Vitis vinifera cDNA clone WIN0417_M08 3 TGAAGCTGCCAGCATGATCTC EST sequence (targeted fragment marked with yellow): GTTCAAGCATCAGGAACAGAGGCTGCTGAGCGCTTCATTGATGCGGACTTAATTAGATGGTTGTAGCTTCCTTTCTCCTTGAAAAGCTGGGCAAAATGGTGTTTGCAATACAAAATGCCCTCAAGGGCTGCATAATTTGATGGGGATATTGGGCAGCCACCATGGGAGCACTTGAAACATGATTTGTGATAAGCCTGGCTCTCCACGGTTACCTTCTCAAGTGGATAAGCTGTTTTACCACAGGTTGCACATTTCTCTTGTGTCCCAGAAAACATGCTGGCAGCTTTGCTGGGTGACCTTGTCAGCTCTGGAGTTAACTTCTCAGCTGACTTCGCAGGTGACTGAAAATTCTTGTTGAAATTTCCAGACTCCTTAAAGAGCTGCTCAAAGTGAGGCTTACAGTAAAGAACACCCTCCATTGAGGAATAATTGCTCAGCTTAAGTGTCCCATTGCAGTGAGAGCACTTGAAGCACGATTTATGGTAAACCACTCCATCAGCAGACAACTGCTCAACCGGATAAACAGTCTTCAGGCACGCCTTGCATTTCTGTTGTGTGCCAATGAAAGACATAATTGTGCGTGCCTTAGATCCGACTTTTTATCCGATTCGGAAATGCGAGATTGGCTTCGGAAATATATGCTTAGATTTGCCTTTCCCTCAGCTGCTCAGAAAACTAAACAAGCCAGAAATCGTTGATCCGTGAGGTCTTCAGAAATGAAGGTCTTAATCAACAGCCAGACATTAAAGATTCAGAGGCGATTTGGAGAATCAAAATCCAAGCTAACGTAAAAGAGAGCGGGAGAAAGAGGATTGGAC | |||||||||
gi|110730479|gb|EE107603.1|EE107603 SCB03820 Inflorescence with GA3 (VvS12) Vitis vinifera cDNA clone SCB03820, mRNA sequence TGAAGCTGCCAGCATGATCTC EST sequence (targeted fragment marked with yellow): ATTTTATGAGTTCTACAGGCACCGATTTTTCACTTAATCCAGCAATGACACCTTCCAGTTGCATTGATGAATCTGGTTTCCTGCAGTCTCCAGAAAATGTGGGCCAAGTAAACCCACCAACCCGAACCTTTGTTAAGGTTTACAAATCAGGGTCCTTCGGAAGATCACTAGATATCACTAAATTCAGCAGCTACCATGAACTGCGTGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAGTTGGAGGACCCTCGGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGTGCAGCAGATGGGAAAACGAGGGTTAGAGCTTCTGAACTCGGTCCCCATACAAAGGCTCACTAGTAGCAGCTGTGATGACTATGCAAGCCGGCAGGACTCAAGAAATTTGAGCACTGGGATCACATCTGTGGGGTCTCTTGACTACTGAACAATTTAACAGTAAAGATACTATTCTCTCTTCTGTAATATTAGCATCTCTTTCAATCGCTCTCATGTTGGGTANGGCTGCCTAATTCTAGCTTAAAGCTCTTATATTTAAGCCAATACTGTAATTATATGATATCTGCCTTCTCCCTTTCTATGCTTTTGATATACATACNATACATATTTATTAAGAGACTAATGTTCTTTAAGATCACTGCTTGTTTTTATTTTCTT | |||||||||
gi|110707709|gb|EE084414.1|EE084414 S5B01860 Fruits 7-9 mm treated with GA3 (VvS5) Vitis vinifera cDNA clone S5B01860, mRNA sequ TGAAGCTGCCAGCATGATCTC EST sequence (targeted fragment marked with yellow): AGTGGAACCAGAAAACTGTAACTTGGATGCCCAGAATCATACTCTTTTTGGTGTAAACATTGATTCGTCTGGGCTGCTACTCCCCACAACAGTGCCCAGTTTTGGTAGCTCCTCAGTTGATGCTGATGTTTCCTCGATGCCATTAAGGGCTTCTGGGTTTCAGGGCTCGTTATTTGGTTGCGTGCAAGACCCTTCAGAGTTGTTGCAGAATGCAGGACAAGTTGATCCTCCAACTCCAAGCCGAACATTTGTCAAGGTTTACAAATCGGGATCGGTTGGGCGGTCATTANACATCACCCGGTTCAGCAGCTATCATGAACTGCGAGAGGAGCTGGGTCAGATGTTTGGAATTGAGGGGAAACTAGAAAACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGTGCAGAAAATGGGGAAACAGGGGATTGAATCAGGATTCACCCCAAATAATGCCCAAAGGATGAATANCAGTGGAACCGAAGATCGAAAACCTGTTTCCAGACAACCCCCCCGCGAGCCCCCTGAAATACGGAGAAGGCAGGGAAAACAGNTTCCAAAAAACCCCAAAACCAATGGCGCCAAACCACAAACGAGGAAAACAAAAAAAAGCCNGGGAAGGCATATAGAACAGGAAGAACACAGATAAGGCACT | |||||||||
gi|122691020|gb|EC966215.1|EC966215 WIN0820.C21_F24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0820_F24 3', m TGAAGCTGCCAGCATGATCTC EST sequence (targeted fragment marked with yellow): GAGAAGAAGCCCAAGAATTGAGGGGGGCCCTGTGCTACAACACGAGGAGGCTATATGTGTATGATCCATCTTATCATGCACCAATAGCAGTTGAAGCTGCCAGCATGATCTAAGCTTTTCTGTTGCCCACCCTTTCTCCAGGAAAGACTAGATCATGTGGCAGTTTCACCTGTTGATGGAAGCATGAGAAACCCTAATAGACTTAAATCCCGTTCCGATCTTCTGATCCGCTTTCAGCAACCCCATTAGGGTTTTTCCTTAGGAAAACCTGAGAAAGGGTTAGTTATCTTCTTCTCTTTGATTTTGGCTCACATATGTGTTTCAAGATTTACTTTCTCTCTCTAGCTATGCCTTGCTTGTTCAATTACATGCTTCTTGTTTATAGTGTTTTCTCATGTTTTCGGTTGTTGTGTTCTTTCTTTCTTTTCTGTGTCATGGTATGTGGAGAATCTTACTTGTAGGAGAGAGATAATGTTAGGGTTTTAAGTGACAGAATTTCTCTGTCTGAACGCGGTTGGTGCTTTTGAGATCCCTCCAAATGCCTTGGTGAGAGAGCTGTAACAGCCTTTTCATAATTTTTTTCATGTATTGTTAATGTCAAATTTAAGTCTCATATGCATTTCTTGGTATTCATGATCTGATCTATTCATATCTATTCAGTTCTCTGGTTGAATGTTTTTCCATCAATTGGGATTGAATCAACAATTCACTGATAAATTAAATTACATATCTGAATATAGATTGAAATGAATAAAAGTAAAACCTTGGATTTGTGACAACTAAAAAACTAAATATTGAATCTCT | |||||||||
gi|294964753|gb|GW838556.1|GW838556 Summer_Black_1953 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence TGAAGCTGCCAGCATGATCTC EST sequence (targeted fragment marked with yellow): GGGGGAACTTTAGCTGCAGAAGCAGCAGAAGAAGCAGCTCTGTTGTATGATGGAGTATAGGTCTCTCTTTTCCCCATGAGTCTACCCTACTAGGGAGTGCTCTTCTTCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACCTGTTGTTGGTAGCACAAGAAACCCTAATCCTGAAATAAAAACCCTAAGTCCCACTTCTATGCTTACTTTCTCATCTGGG | |||||||||