| mature miRNA: TGAAGCTGCCAGCATGATCTG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110718547|gb|EE095508.1|EE095508 S8B02236 Fruits Veraison (VvS8) Vitis vinifera cDNA clone S8B02236, mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): GAGGGAAAGATGGGGAAGAAGCGAAAGCACAGCGAAGCCAATGTTGCAGAGCCGCCGAAGAAGGATTCCGACGCCCCGGAGAGGCCGAAACGGACGCTTCTCGGCTGGAAAGACCCCACCCCAACCGAAACTAAAGAAACTGAATCTTCTTCTCCCATTTTCCGCAACAAAGAGAAGGTGTTGGTCACTTGCTCTCGCCGCATCAGCTACAGGTATCGCCATTTGATGCTGAGTATAGTTTCGCTTCTCCCTCATGCCAAGAAGGACAACAAGGTGGAGTCCAAGGAGAGTAAAGGCGCCACTTTGAATGAGCTCGTTGAGCTCAAGAACTGTTCTTCCTGTTTGTTTTTTGAGTGCAGGAAACAGAAAGATCTATATTTATGGATGGCCAAATGCCCCAGTGGTCCATCTGTAAAATTTATGGTTGATGCTGTGCACACTATGGAAGAGTTGAAGCTTACTGGGAATCATCTAAAAGGATCACGTCCTCTTTTGACTTTCTCAACCAATTTTGATAAGGACCCCCACTGGAAACTTCTCAAGGAGATGATCACACAGATATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATGTCTTTGCTTTCTCACTTGCTGATGATCATATATGGGTTCGGAACTACCAGATTTCTGTTCCTCATAACGAATCTGACAAAGTGGATCGAGGAGGCCTAGATAAAATACCCTGGGTTGAGGTTGGTCCCAGATTTTTGTTGAATCCCATCAGATTTTGGTGGCAGCTTTGGA | |||||||||
gi|122691020|gb|EC966215.1|EC966215 WIN0820.C21_F24 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0820_F24 3', m TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): GAGAAGAAGCCCAAGAATTGAGGGGGGCCCTGTGCTACAACACGAGGAGGCTATATGTGTATGATCCATCTTATCATGCACCAATAGCAGTTGAAGCTGCCAGCATGATCTAAGCTTTTCTGTTGCCCACCCTTTCTCCAGGAAAGACTAGATCATGTGGCAGTTTCACCTGTTGATGGAAGCATGAGAAACCCTAATAGACTTAAATCCCGTTCCGATCTTCTGATCCGCTTTCAGCAACCCCATTAGGGTTTTTCCTTAGGAAAACCTGAGAAAGGGTTAGTTATCTTCTTCTCTTTGATTTTGGCTCACATATGTGTTTCAAGATTTACTTTCTCTCTCTAGCTATGCCTTGCTTGTTCAATTACATGCTTCTTGTTTATAGTGTTTTCTCATGTTTTCGGTTGTTGTGTTCTTTCTTTCTTTTCTGTGTCATGGTATGTGGAGAATCTTACTTGTAGGAGAGAGATAATGTTAGGGTTTTAAGTGACAGAATTTCTCTGTCTGAACGCGGTTGGTGCTTTTGAGATCCCTCCAAATGCCTTGGTGAGAGAGCTGTAACAGCCTTTTCATAATTTTTTTCATGTATTGTTAATGTCAAATTTAAGTCTCATATGCATTTCTTGGTATTCATGATCTGATCTATTCATATCTATTCAGTTCTCTGGTTGAATGTTTTTCCATCAATTGGGATTGAATCAACAATTCACTGATAAATTAAATTACATATCTGAATATAGATTGAAATGAATAAAAGTAAAACCTTGGATTTGTGACAACTAAAAAACTAAATATTGAATCTCT | |||||||||
gi|161718539|gb|FC069304.1|FC069304 sT7aVVM024F24092 VVM Vitis vinifera cDNA clone VVM024F24092 5' similar to emb_CAO65376.1 unn TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): AGCCGAGCTTTCTCGCTCTACATCCTCTCTCTCCCTCTCTCTGTGCAATGAAGATGGCTTCGTCTTCGCTCTTCGTTTTCTTCGTTGTTCTCCTCTGCCTCGCTTCTCGGCCGTCGCACTCGCACACTGAGTCGAGTCTGTTGGAGGACACCAATGCGACGGCGGAGTCCAACGCCTCGCGGTCGAGATCTCAGGACAGCTTCGCCGACATGATCGATCGGGCGCTGGAGAAGGAGTTCACGGAAAATGAACAAACCGGAGCCAGTGATGCTGGTAGCTTCAACAACAGTGTTGCGGAACAGCAGGCAGTTTTGGAAACTGTTGCTAGAGTTAGGCCCAAGAAAAACGACACGAAGGAGGAGAAGTCATTTCAGCTTCACAATGTTTTCAATTTGGATAATGAGAACAGACAAGAAGATACACCAACATTGATAGATCGAAAGGACAATGTTTTTATTATGTCCAATCCCAAGTCAAAGTACCCTGTGCTACAGTTAGACTTGAGATTGATATCAGATTTGGTTGTTGTCATTGTTTCTGCAACTTGTGGCGGCATCGCCTTTGCTTGTGCTGGACAGCCGGTTATTACTGGATATCTACTGGCAGGATCTGTTATTGGACCTGGAGGT | |||||||||
gi|161709944|gb|FC058481.1|FC058481 sT7aVVM_AER20G12 VVM Vitis vinifera cDNA clone VVM_AER20G12 5' similar to emb_CAO22224.1 unn TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): AAGAGCGTTCTCATCCTCTGCGGCGATACATGGAAGACTATGAGGTGATGGTTCCCTTTCAAGCGTTGCTGGCCTACGGAGTCTCCGTCCACGCCGTTTGCCCTGGAAAGAAAGCCGGCGACGTCTGCCGGACTGCTGTTCATCAGGGCCTTGGTCATCAGACTTATTCTGAGTCACGGGGTCACAACTTCACAGTCAATGCAACCTTTGATGAGGTTGACGCAAGCAAATATGATGGACTTGTTATTCCAGGAGGGCGGGCTCCGGAATATCTTGCAATGAATGAATCTGTTTTGGACTTGGTACGCAAATTTTTTAGCTCTGGAAAACCAATTGCCTCTATTTGCCATGGGCAGTTAATCTTGGCAGCTTCAGGCTCAGTCAGAGGACGGAAGTGCACAGCTTACCCTGCTGTGGGACCTGCACTCATTGCTGCAGGAGCTCATTGGGTAGAACCTGAGACCATGTCAGCATG | |||||||||
gi|294963770|gb|GW836620.1|GW836620 Summer_Black_0017 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): GGGGACTCTCTTCCTCACTCTGTTTCTCACAAGATGGCCAAGAGCATTCTCATCCTCTGCGGCGATTACATGGAAGACTATGAGGTGATGGTTCCCTTTCAAGCGTTGCTGGCCTACGGAGTCTCCGTCCACGCCGTTTGCCCTGGAAAGAAAGCCGGCGATGTCTGCCGGACTGCTGTTCATCAGGGCCTTGGTCCTCAGACTTATTCTGAGTCACGGGGTCACAACTTCACAGTCAATGCAACCTTTGATGAGGTTGACGCAAGCAAATATGATGGACTTGTTATTCCAGGAGGGCGGGCTCCAGAATATCTTGCAATGAATGAATCTGTTTTGGACTTGGTACGCACAATTTTTTAGCTCTGGAAAACCAATTGCCTCTATTTGCCATGGGCAGTTAATCTTGGCAGCTTCAGGCTCAGTCAGAAGACGGA | |||||||||
gi|110703715|gb|EE080803.1|EE080803 S2B12046 Buds (VvS2) Vitis vinifera cDNA clone S2B12046, mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): ATAAGCCATACCACTCCAAAACTCCTCCAAAGCCCACGCGCCCACAGTCACTCTCTTCCTCACTCTGTTTCTCACAAGATGGCCAAGAGCGTTCTCATCCTCTGCGGCGATTACATGGAAGACTATGAGGTCTTTGTCCACTCTAGGCGGCATGAACAATTTTGGGGTTGATTGTTATCTCACTATTTCATGTCGTTGCAGGTGATGGTTCCCTTTCAAGCGTTGCTGGCCTACGGAGTCTCCGTCCACGCCGTTTGCCCTGGAAAGAAAGCCGGCGATGTCTGCCGGACTGCTGTTCATCAGGGCCTTGGTCATCAGACTTATTCTGAGTCACGGGGTCACAACTTCACAGTCAATGCAACCTTTGATGAGGTTGACGCAAGCAAATATGATGGACTTGTTATTCCAGGAGGGCGGGCTCCAGAATATCTTGCAATGAATGAATCTGTTTTGGACTTGGTACGCAAATTTTTTAGCTCTGGAAAACCAATTGCCTCTATTTGCCATGGGCAGTTAATCTTGGCAGCTTCAAGCTCAGTCAGAGGACGGAAGTGCACAGCTTACCCTGCTGTGGGACCTGCACTCATGGCTGCAGGAGCTCATTGGGTAGAACCTGAGACCATGTCAGCATGTGTTATTGATGGTAACCTTATTACTGCAGCAACTTACATAGGTCATCCTGAGTTCATCCAGCTTTTTGTAAAAGCACTANGAAGCACCATAACTGGTTCAGATAAACGGATTCTATTTTTGTGTGGGGATTACATGGGAGACTATGANGTAATGGTCCCTTTCAATCC | |||||||||
gi|294964753|gb|GW838556.1|GW838556 Summer_Black_1953 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): GGGGGAACTTTAGCTGCAGAAGCAGCAGAAGAAGCAGCTCTGTTGTATGATGGAGTATAGGTCTCTCTTTTCCCCATGAGTCTACCCTACTAGGGAGTGCTCTTCTTCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACCTGTTGTTGGTAGCACAAGAAACCCTAATCCTGAAATAAAAACCCTAAGTCCCACTTCTATGCTTACTTTCTCATCTGGG | |||||||||
gi|294963863|gb|GW836738.1|GW836738 Summer_Black_0135 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): GGGGGAAGCCCACGCGCCCACAGTCACTCTCTTCCTCACTCTGTTTCTCACAAGATGGCCAAGAGCGTTCTCATCCTCTGCGGCGATTACATGGAAGACTATGAGGTCTTTGTCCACTCTAGGCGGCATGAACAGTTTTGGGGTTGATTGTTATCTCACTATTTCATGTCGTTGCAGGTGATGGTTCCCTTTCAAGCGTTGCTGGCCTACGGAGTCTCCGTCCACGCCGTTTGCCCTGGAAAGAAAGCCGGCGACGTCTGCCGGACTGCTGTTCATCAGGGCCTTGGTCATCAGACTTATTCTGAGTCACGGGGTCACAACTTCACAGTCAATGCAACCTTTGATGAGGTTGACGCAAGCAAATATGATGGACTTGTTATTCCAGGAGGGCGGGCTCCGGAATATCTTGCAATGAATGAATCTGTTTTGGACTTGGTACGCAAATTTTTTAGCTCTGGAAAACCAATTGCCTCTATTTGCCATGGGCAGTTAATCTTGGCAGCTTCAGGCTCAGTCAGAGGACGGAAGGTGCACAGCTTACCCTGCTGTGGGACCTGCACTCATTGCTGCAGGAGCTCATTGGG | |||||||||
gi|110374260|gb|EC938925.1|EC938925 WIN058.C21_B09 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone W TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): ATTTGCCATGGGCAGTTAATCTTGGCAGCTTCAGGCTCAGTCAGAGGACGGAAGTGCACAGCTTACCCTGCTGTGGGACCTGCACTCATTGCTGCAGGAGCTCATTGGGTAGAACCTGAGACCATGTCAGCATGTGTTATTGATGGTAACCTTATTACTGCAGCAACTTACATAGGTCATCCTGGGTTCATCCAGCTCTTTGTAAAAGCACTAGGAGGCACCATAACTGGTTCAGATAAACGGATTCTATTTTTGTGTGGGGATTACATGGAAGACTATGAGGTAATGGTCCCTTTTCAATCCTTTCAAGCTCTTGAATGCCATGTTGATGCGGTTTGCCCGAAGAAGAAGGCCGGTGAGACCTGTCCAACTGCTATTCATGATTTTGAAGGTGATCAAACTTACAGTGAGAAGCCAGGCCATGATTTCACTCTAACAGCCACTTTTGAAGATCTAAACATCCCAAGCTATGATGCTCTTGTTATACCTGGAGGCCGAGCCCCAGAATACTTGGCATTAAATGAGAAAGTTATTGCCTTAGTGAAGGAATTCATGGAGGCAGGAAAGCCAGTTGCATCCATTTGCCATGGACAACAGATTTTAGCTGCTGCTGGAGTTCTCAAGGGAAAGAAATGCACTGCATATCCTGCTGTGAAACTCAATGTAGTTTTGTCTGGGGCAACATGGTTAGAACCTGAGCCAATAGATCGCTGTTTCACAGATGGAAATTTGGTAACTGGAGCTGCTTGGCCAGGCCATCCAGAGTTCATCTCTCAGTTGATGACGTTGCTCGGTATCCAGGTCTTGTTCTAGTTATTTATCTATGTGCTGGCCTGTATGCCTTAATTGTCTATTGAATAAATAGAAGATTTGGCTTACATATCAGAATGAGGAAACTTTTTAAATTTTG | |||||||||