| mature miRNA: TGCCAAAGGAGATTTGCCCCT species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|156725784|gb|EV229895.1|EV229895 VV_PEa08e01.g1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence TGCCAAAGGAGATTTGCCCCT EST sequence (targeted fragment marked with yellow): AAAAGTNNNNNNNAAAGGACCGATGCGGCGCAGCATAGCTTGCTCGAGTCTAGAGTCGACTGGGCCGAGGCGCCCTTAATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCTATCGAAGAAACCAATTATTTCTTTTATTTATTTTTCAATAAGATACGCCTGAACACCACATTAACTACAATTGTTTGAGGAATATTTAAGATAATGAAACACCGAGAACTTCAAACTCATCGTTAGAGATTGACCTCGTCACAAAAAAAGTCTACCAATGACTCACGTACAAATCCGAATTTATCAAAGTAATAAAGGTACTATTACAGTATTATCAGATTCCAAGATAAATCCCCCCTGCTAACGCCTATTTGAAAAATAACTGCATTGAAGGGGAAACCCTTCTCTTTTATTTACTCTCAATTCGCAACTGGGGGAATGAAATGCCTCACAACAGATTCATATGGCCAATCCCGGACCAAAACCAAATAATACTCCCCAATCCAATCCTTAACCTGGGGAAGCATTTTCCCCCTTGAAGGATTTCTTTCTCCTCTCCTCCGAAATGAACGACACCCCTGCCCTTGAGGTGGAACCGCACTCACTTAACACATGGCTAGGTGCTTCGAGAATCTTTTTCTCAAAATTGAGTTTTGCTTCAACTGGATCGAAAATTGCAGGGCCACCTGGGTGAGCAATCCAAAATAACGAGTTCCAATCGCTAATACCAAGTGGGTCAAAAGCCTGGGTCAAGCATTTCTCTATGTTTTCAGAAATCCAAGTAGGCACATTGGGCCCAAAATGAAAGGGGAGCCCCACCTCACGTAAGTTTCCGGAAATGGCTCCCGCTGAATTAAGAAAAAATGGTTGGGATGCTGAAACAAATTGGAAAAATGGGTCGTTCAACCGAGAAATCTGGGTCTGAACTCAAAATCACAGCTGGAAACCCCTCAACAAAAAAGGGGTTGGGCCAATTAAAAAATCCAAAACATCCTTGGAAAAGGCTACCGGAAAAGTCCCCCACCGGGCTTTTTTCAAAGGCACCCCCACAGAAAACTCGGGGCCCCTGGCAATATTTTTCGGCGCAAAACTCCTTTGGCGGTTCCCAGGGGGCCGGCTCCCCCCC | |||||||||
gi|156729735|gb|EV233856.1|EV233856 VV_PEb10f03.g1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence TGCCAAAGGAGATTTGCCCCT EST sequence (targeted fragment marked with yellow): AAGGTGAGGGCGCCCGTGCTCGTATAGCCAAANGNNNNNNCTTGCTCGAGTCTAGAGTCGACTGGGCCGAGGCGGCCCCATAAAAGGTTTTTTTTTTTTTTTTTTTTTTTACCAACCCCTTTTAAACCATTTTGAGTGAATTGGGTAACAGAGGGAAGCTTCACAAACTATTTTTTAAACCCCCACAAGATACTGAAAACACACTTCAAAACCATGTACAACAACAGAGAAGGAAAGCTTACAACCTTGTACTTAAACTAGAAAATACTGTCTGATATCAAAAGATTCGGGGACTACCATACAGAATGCCTTCCCACTTCTACGTTTGCCCCTAAAGTTTATAAACATATTATACCCTGGAATCCATGCATAAAATTGTCCTTCCAAGGGGGAGTCAGGGGGCAGTCACTTCCATTTTCCTCGGCATATTATCAATGATCTTTGTGGGCACATTTGCAGCACTGACTGGGGTTAACTTCTGGTCATAAGCTGAAAGATGGACTCCTAATGCCCCCCTGCCAAAAGGATCAGGGTTTTTTGACCACGCAAAATCCCTTTCAACTGCTTTGGCAGTGCTGCATGCAACTCTTGCTCCTCCCGGAACAGTCACCCTAGCTGAGTTCTGGGGGAAGAACCTCTCAAAGATCATTCGGTAATAGGGGGCTTCCTTTGGGGTAGGGGTATTGTGTGGAAAGATATGTGAAGCTTTGAGCATCATTTTTTTCGGTCACAAGTTGTGAACCCATGGGCTTTTGACCCCCTCAATCCAACTGGATGCCGACCCCTCTCGCATGAATTGGTTCTTTTTTCCCTGGAAAAAAAAATGTCTTTGCGCAAAATAGGGGTTTTTTCTCCCCTTCATTAAAAGGCCCCCCCAGAAAAACCCCTTTTTCTCAAATTCCCCCCCTTGTTTTCGGGGTTTTTATCCGAAAAACAGAATTTTAAATCTTTGTCTCACAAAAAAAAACCCCCCCTTGTGAAAAAATCCTATAAAAATTTTTTTCGCCCCCCCCCTCCTTTATAAGAAATAAGCCACCCCTTAAGTGGGAATAATGGGGAATATTTTTTTTTAATAACAAACCCAATTTTCCGCCCCCCGGGGGGGAAAAATTTCCACATTGTGAGCAATTCTTAAAGGGAAAATCTCCTCTGGCGCCTAAAAAGAGGGGGGGAACTCTCTGGGGTCTTTCTCACACAACCCTCCTCTCTCTTATAG | |||||||||
gi|122690415|gb|EC952375.1|EC952375 WIN0555.C21_H22 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone TGCCAAAGGAGATTTGCCCCT EST sequence (targeted fragment marked with yellow): GTTTCTTTTATTATATACATAGTGATGTATATTTACACGAGTATTCAAAACAAGCACATCAATCATATATAGCTTGTTGGATCCTGTTGTTTCTGACTGGAAATCATCACCATGAATTGCAAAATATCTGCTTGATCAGAGCAACTTTGCGAAATGGGTTCCTGTATATGGCAGCAACTTGACTTGTGGGTCTACAAGTGAGTGTTACCTTCTTCTCCAACACATTCACTTCCACCGACTCCATCTCTGCATTCATTCTTGAAATTATAGCAGCAATTCTCTTTTGGCATTCAACACACTGAAAATCTGCAGAGATGACAACTTCCTGGATAAGAGGCATAGTTAAGGATTCAACAGAGGCAAGGGTAGTTCGATGAATCTGTGAGCTCCTTGACTTTTTGAACCCAATTATAGGAAGCTCCTTCTTGACCCCATTCACAACCGCCATGGCTTTGCTTTGTGATCATTCAGACATAAGCAACAGGGGGGCTTTATAAAGGATACAAGGTGGATCCGTGTTTGAGAGAGAAGGATGGAGGAAGAAAAGGATCTAAGAGCAGCTCCTACTGAACTGACAGAGCAATCCC | |||||||||