| mature miRNA: TGGAGAAGCAGGGCACGTGCA species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110724904|gb|EE101141.1|EE101141 S9B08890 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B08890, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CTCATGTTATTCTTTCCCCTCTGCATCTGCTAGTCCTCTGCTTCTCCATTCCCATTTTCATTTCCATTCTCTCTCTCCTTCCCTCTCTGCACTCTTGGCGTCCAATGGCCACTCTTGAAGACATAGGGGTCTCGGCTTCCATCAACATACTTAGTGCATTTGCCTTCTTGCTGGCCTTTGCTCTCCTCAGGATTCAGCCCATCAACGACAGGGTCTATTTCCCTAAATGGTACATCTGTGGAGGAAGAGCCAGCCCAAGGCGCTCTGCGAATTTTGTGGGCAAGTTGGTCAATCTCAATTTTTGGACTTACTTCACTTTCTTGAACTGGATGCCTCAGGCTCTGAGGATGAGTGAAGCTGAGATCATTCAGCATGCCGGTCTTGACTCTGCTGTTTTCCTCAGAATTTACACTCTCGGATTAAAAATTTTCTTACCAGTGACTGTTCTGGCGCTCCTTATTCTTGTTCCAGTCAATGTATCTAGTGGAACATTATTTTTTCTGAGGAAAGAACTGGTTGTGAGCGATATTGATAAGCTTTCAATATCTAATGTCCGTCCTGAATCAACAAGGTTTTTTTTCCACATAGGGATGGAGTATCTGTTCACGATGTGGATTTGTTACATGCTCTACAAGGAATATCATAATGTAGCATTAATGAAGTTGCATTTCTTGGCTTCACAGCACAGGCGTGTGGAACAGTTCACTGTGGTGGTTAAGAATGTGCCGCATGTTTCTGGTCACTCAATATCAGATACTGTAGAACACTTCTTTCAAACAACT | |||||||||
gi|161713712|gb|FC063743.1|FC063743 sT7aVVM007O07018 VVM Vitis vinifera cDNA clone VVM007O07018 5' similar to emb_CAO23850.1 unn TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GTTGAGTCAAGGTTGCCACCAGGTTTCAGGTTCCATCCAAAAGATGAAGAGCTTATGTGATTACCTGATGAAGAAGGTCACTTCCTCTGAATCTTCTCTGTTCATTGAAGTTGATCTCAACAAGTGTGAGCCTTGGGATATTCCTGAGATGGCATGTGTTGGGAGCAAAGATTGGTATTTCTACAACCAGAGAGATAGGAAATATGCAACAGGACTTAGAACAAATAGGGCAACACTATCTGGATATTGGAAGGCGACAGGCAAGGACAGGCCGATCCTTAGCAAGGGCACCCTTGTTGGCATGAGGAAGACCTTGGTCTTCTACCAAGGTAGGGCACCCAAAGGCAAAAAGACTGACTGGGTCATGCATGAGTTTCGCCTCCAAGGCCCTCTCACCCCACCTGCCATTCCTTCTCTCAAGGAAGATTGGGTTCTATGTAGAGTGTTCAACAAAAGTAGATCAGAAGCAGCAGGCAAGGCAATAACAAGCAACATGGGGAATGGGTACTATGATAACATGAACATGGGCTCTTCAACTCTTCCACCACTAGTGGATTCTTACATCAATTTTGATCAAACTGAAATCAAACTCAATGAATATGAGCAAGTGCCCTGCTTCTCCGATATGTGCTCCCCAAACCCATCAACCTAGTGTTCCACACATCACCCATATGGAGCACACTGCTCACTAAACTATGCACCATATTGGAGGAT | |||||||||
gi|110717701|gb|EE093790.1|EE093790 S7B05239 Berries 14mm with GA3 (VvS7) Vitis vinifera cDNA clone S7B05239, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): AGATTAAGCTCTTATGGAAATGAATTGAATCCTTCTGTTCTGCCACCGCTAATGGATGCTTCGGCAGCTTACAACCCCAGGACCAGACCTGCCACTTCGCAATCACCTCACGTGCCCTGCTTCTCCAACCCCATCGATGTTCCCAGAAACCAAGAAGAGATATTCGACTGCTTCAACAATCCTCTCCTTGCCATTTCCTCCAACCCTTCTGACATTTTCCAAAGATTCCACCTCCCAAACCCCTTTTACTCATCTCAAGCTGCCACAATTCCAGGAACTCTGCAATACCCCACTTCCTTCCTAATGCAAGACCAGCCAAGCCTAAGGGCTTTACTAGAGAACCATGGATCAAACATGAGGCAGAGCCAGAAACTAGAGAGGGAGATGATCAGCGTCTCCCAGGAGACAGGCTTGAGCACTGATATCAACACTGAGATCTCCTCCGTGGTGTCCAATCTGGAATTGGGGAAGAGACCATTCGAAGATCAACACGTCCCATCTACTTCAGTCGGACCTGTTGACCTTGATCCCCTTTGGAACTACTGAGACTAAAAGCAAGCAGAAACAGAGCAACTCCTCTCGAATTACTACTAGTTTACCACTATAGTCTGAAAATGAANGTGTGAGCCAGTGTATAGATTTCCTCGATCCAAGTAAGAGAGATGAAAGAAAAGAGTGAGAATACATATTATCCGTATTGTAAAGAAATACATTATATCTTTTACTCTTAATTTGTCATAAAATCTTTAAGATGGT | |||||||||
gi|161719376|gb|FC068292.1|FC068292 sT7aVVM021F13059 VVM Vitis vinifera cDNA clone VVM021F13059 5' similar to emb_CAO68676.1 unn TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): TCTCTCTCTTTTCCTTCTCTCTTTTTTCTCTCTTTCTCTAGGCTGTTAGTTGGTTCTGAAATCATGAGCTCTCTTCGGTGGAAAGCCATGGCAATAGCTGTAACTTTGCTTCTGCTCTGCTTTTCCAGAGAAGTTGAATCATCTCTCTCTTTGTCAGACAAAATTCTAGAGCTACCAGGTCAACCCCAAGTGGGGTTCCAGCAATATTCAGGCTATGTGGCTGTTGATGAGAAGCAGCAGAGAGCTTTGTTTTACTACTTCGCTGAAGCTGAAACAGATCCAGCTATCAAGCCTCTTGTTCTCTGGTTGAATGGAGGCCCTGGTTGTTCTTCTCTTGGGGTTGGGGCATTTTCTGAAAATGGGCCATTTAGGCCTAGTGGGGAGTTGCTGGTGAGAAATGAATACAGTTGGAACAGAGAGGCAAATATGTTGTATCTGGAGACACCAATAGGAGTTGGGTTCTCTTATTCAACTGATTCTTCCTCCTATGCGGCTGTAAATGACAAGATCACGGCCAGGGACAATCTGGTGTTCTTACAAAAATGGTTGCTCAAATTCCCACAATACAAGAACAGAGATTTATTCATCACAGGAGAAAGCTATGCTGGCCACTATGTTCCCTCACTTGCTGAGCTAATGC | |||||||||
gi|110702873|gb|EE079226.1|EE079226 S2B22811 Buds (VvS2) Vitis vinifera cDNA clone S2B22811, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CGCCTCCAAAGCCCTCTCACCCCACCTGCCATTCCTTCTCTCAAGGAAGATTGGGTTCTATGTAGAGTGTTCAACAAAAGTAGATCATAAGCAGCAGGCAAGGCAATAACAAGCAACATGGGGAATGGGTACTATGACAACATGAACATGGGCTCTTCAACTCTTCCACCACTAGTGGATTCTTACATCAATTTTGATCAAACTGAAATCAAACTCAATGAATATGAGCAAGTGCCCTGCTTCTCCGATATGTGCTCCCCAAACCCATCAAACCTAGTGTTCCCACACATCACCCATTTGGAGCCACACTTGCTCACTAAAACTATTGCACCCATATTTGGAGGAATGCCAGACTTGGGTACTTTCTCTTGTGATAAAATGGTAATAAAGACTGTGTTGAACCAGCTCTCCAATGTGGAAGAGTCACCAAGCTTTGGGGAAAGGAGTTCATCATAGAGCTACTTGTCTGAAGTGGCTCTGCCCCCCATTTGGAACCATTATTGTTAGTACTGTTCCTGTAAAGGAGTTGTATGATATATTTCATTTATGAGAAAGGTTTCTTCTCTTGTTAGAATTGTACATATATGTGTCTTTGTTTCCCCTCTAATAG | |||||||||
gi|110717570|gb|EE093540.1|EE093540 S7B00827 Berries 14mm with GA3 (VvS7) Vitis vinifera cDNA clone S7B00827, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CTCACGTGCCCTGCTTCTCCAACCCCATCGATGTTCCCAGAAACCAAGAAGACATATTCGACTGCTTCAACAATCCTCTCCTTGCCATTTCCTCCAACCCTTCTGACATTTTCCAAAGATTCCACCTCCCAAACCCCTTTTACTCATCTCATGCTGCCACAATTCCAGGAACTCTGCAATACCCCACTTCCTTCCTAATGCAAGACCAGCCAAGCCTAAGGGCTTTACTGGAGAACCATGGATCAAACATGAGGCAGAGCCAGAAACTAGAGAGGGAGATGATCAGCGTCTCCCAGGAGACTGGCTTGAGCACTGATATCAACACTGAGATCTCCTCCGTGGTGTCCAATCTGGAATTGGGGAAGAGACCATTCGAAGATCAACACGTCCCATCTACTTCAGTCGGACCTGTTGACCTTGATCCCCTTTGGAACTACTGAGACTAAAAGCAAGCAGAAACAGAGCAACTCCTCTCGAATTACTACTAGTTTACCACTATAGTCTGAAAATGAAGGTGTGAGCCAGTGTATAGATTTCCTCGATCCAAGTAAGAGAGATGAAAGAAAAGAGTGAGAATACATATTATCCGTATTGTAAGATATTACATTAAATCTTTTACTCTTAATTTGGCATATAATCTTNAAGATTGTCCGCTTGCTTCCCCCTCATATTAATAAATATAAAATTAGTTGGTGGCTANNNNNAANAAAATANAACAAANAACCCCTCTTTTCTTGAAAAAATTGGCATTAAAAGAAAGCTT | |||||||||