| mature miRNA: TGTGTTCTCAGGTCGCCCCTG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110730285|gb|EE107193.1|EE107193 SCB04167 Inflorescence with GA3 (VvS12) Vitis vinifera cDNA clone SCB04167, mRNA sequence TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CATAGGAAAAGAAAACAGAGAAAGAGTGTGTATCTGTGAATCAAGTGTTGAGCTTCTCTCTCATTCTTTTGTTTTTGCGCCACCACTCACACCAAGAAGCTAAGCTCTTGCCTCTCTACCTTCTGGTTTAATCAAGTCTACATAGAGACAGATATGGAGGTGGCGATGGAGATAGAAGATGATTTGTTCTTTCAAGACTTGAGCAAGCAAATTTCTCTTCTAATCATGGACGATGATGAAGACCCGGTTGCTCGTTGCCCTTCTGTTTCTCTCCAGGCCTTCTCCAGAGTGATCCACCCATCCACAGAATACCCAATCCTACATGATGAAAATTGCAAAAAAGAGAGCAAAGGCACAGGAGTTTTCATTCCAAGATCATCCCAGCCAAGAAGGAAGAACAGGCGAGGGAGATTCAACTCATCCAACACCAAATCTCAGAGGCAACCTGATAACACAAGAGGGGTTTCTCATCTATCCTACAAAAATTCTTTTAACCCCAAAAAATGCTAAGCAGCAACAGATTGGTTAATTAGCGATGAAGTGTATAATTTGAATAATGATTCTACTAATTACTTTGCCATTGTGTTGAGGCAAAGCCCCTCTTTTTTATTTCCCCCTTTTAATCTGTATGGTGGCCATGTACATTAAATCTGTATTACTCTACTATAAATCCTTGGCTTTGGGGATGTTTCAACAATACAAAAAAAGAAAAAAAAAACCCAACTTTCTTGGTCA | |||||||||
gi|156733311|gb|EV237432.1|EV237432 VV_PEc02H12.f.ab1 Vitis vinifera cv. perlette LibC Vitis vinifera cDNA, mRNA sequence TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CCAACCGGATCATTAAAAAGAGGAGTAGCGAGGGCCGCCCACGCTCTCCACTTTGTCAGTTATTTTAAATTTAGGACAGCCTGCCGCCCATAACAACAATAGTATGACAGAGTAGTGCACAGGGACTCCTATTATTGGTCACCTATGAGATTGTAGGGAAGACCTGAGAAGACAGCACCCGATCTGTCNGTGTGAGACCTGACTCGTAGGTAGTCTACCTCGACGNATCGCATGACAAGAGTGTCTACTTTGAGAACGTACNAATGTGTCTATACACCTCTCGACTGGCTTGGAGCGTTGCATGTACACCTCGACACATAAGTCCTCTAGTCGTCTAATACATCTCAGCATTCTTCAGCGCTTGAGCTGGAACGCGTAAATGGTGTAGCACATTATGCATCCTCAGCGCGCATCTGTCAATGTTCTCATCGATATACAGTACTCTACCGTATCCAACAGATGTGCCTCCTATCCATGCTGTCCATGCACTAGACNCTCGTTAGCGAGTGTCCACTCCNTAGAGATACGCATCTTCATCACGTTAGAAGTCGTCTCCTCACATGCCATTGCNCAGTAAATCTGCCCTGCCCGAGCGCCAGAGCGGCGTACTCACATCATCAGATTTCCTCAGTATGCGGTGCTACTGCTCATCCCGCCACTGCTGAGGAGCCTTTCACTAGTCCTTACTTAGTCTTCTCTCCTCTATAGAGCACGAAGAGTGATATGAACTATCTCTCGAACGCACTGCGTGAGTCTGCTCANAATTCCAGTAGCGAGACCACAATACTCTTAGATATTTGCCGCTAGCGGGCAGNATACACCTCACCTATACATCGGTGATCATCATCCACATCTTCCTCGCTATCAATACCATTATCAGATCGCCCGCGAATTAACCTTTAACTAGATTGTTTACAAGGCTCTTAGAGAGCGCTGGCTCCTCATGATGGACTTGGCATTCTCTTAATCCTCCAAAAAATTTAAATTCTGGTTTGTTAGCTCCGACTACTAACTCGGAACACAGTTATTTAATCACAGGTGATCGGGAGATAAAACCTCGTGGTTACTGGTGCGTCTATATCTTGTCATTGTATAAACTCGGGACACTATCTTGTGTACCATATCGATCCTCCTCGTATACGAAATACTAAATGCTCGGAGTTATGTGGCCTAATCACCTATGATGGTACGAGCGCTCGCTTTCTATCGACACTACATTCATTTCTGCGCTTCTAAACGCTTGGAGATTTACTCACATCTGGTCGACGCCATTAGGACATCTCTACCAATATCCATGTGCATCTCTNCTAGTATCTAATGAGACGCTGTCTCTATATCTATACGTCAATTGCACCTCACTACATATAGTTGGCTGACGTTCTAACATTATTACACCATCCTCTCACTCAACTCTCGCGTACATATTCTCCAGCTGAGGGCGTAAATATATCACTATCTANGTGTGACGAAAAAGACACAACTTGGTTTTTGTGCCCTACAGAATATGGAGTGCTCGATGACGTATAAATCTGTGCTCTAAGTCATAATATCAGCTTTGAATAATACTGCGCCACCCACCTGTCTTATACTTCGGTGCACTATTTTATTTCTCTAATATGCCGAGTTCACTCCATCCTTCNCTAGCGTGCTGAAACATGAAGACTCATTCTCTATAAATGAATCTCCTACAACCTAGTCTAGTACGCTTCTACAAAGTTGTGTGGCTCACACANAGCTCGCCTCACTCGNGGCCACTCATCGTGCATACATGAATCTCTCTTGGTGTATCCTATTATCGCTCACTCAACGTGAGATAGCTCTCTCCCACATTTCTGTGTCGCTACTTGATTCCTCTTGNTACACGATAACGACCGGCGTGCGACTTGATACACATCTGCTAATACACCGTGTACACTCACCATCTATATCACACCACCTCAACTCCGAGGAACGACACGATGCGCGCCAACCTCTTCTCTGCCTAAAATAAGCTCCTGCGCCATGATGAAGAGGATATACATACGAGTACTTGATGGATAATAGATGAACTCNCATTCACGCCTCTCTACNTATAGTGTGGCATATGGAATGACACACATGAATCTCTCTCTTATAATCTCGTATCCGTGACACTGCTATGCCTCTGTCTATAATTCAGCGATAATTGTATTCACATAATCTTGTACTCACAATCCGCACGCGTAGAAGAACATCTATGATATCTATACGTCTATCTCGTGGTCACACGTACTTCCTCGATGCTACATACAATG | |||||||||