| mature miRNA: TTAGATGATCATCAACAAACA species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110712386|gb|EE089947.1|EE089947 S6B05664 Fruits 7-9 mm (VvS6) Vitis vinifera cDNA clone S6B05664, mRNA sequence TTAGATGATCATCAACAAACA EST sequence (targeted fragment marked with yellow): GGAGACTGTTCCGAAGAAAGCTCTTCTGAGTTCTACCATTTTTACCTCTCTGCAAATTCGTAGATTCAATGAATAGATTTCCACCGTTCGGTTTTCGCAAATCTAATCTGAGCAGAACAGGCTGCCGTGCTTACCTTTGATTCCGGTTTGTGTGAATTTCGAAATTCTGTTTGTATCCGAATCCTCAAAGATCCGATTTCCGTGTAGTACAGAGATTCCGAGCTTTTTCGATCTCGCGTCATTTTATGGGTGATTTAGTTCTGGCTTTGGTCTCCTGTTTTATTTTTTGAGGCTTTACGCTTTGGATGCGTCATTGTTTACGTGTTCGTTGATGGTCATCTAAGTTTCTTCCGAAGCGATAATTGACATTCGAGCGAAGGTCTTGAAATCCATTTTGGTGAGAGATGGTTGCCTTTGGGAAAAAGCTGAAAGAAAGACAAATCCAGGAATGGCAAGGGTATTACATCAACTACAAATTGATGAAGAAGAAAGTAAAACAATATGTTCAACAAATTGAAGGTGGAGCACAAAATCGCCGTCATGTTCTTAAGGACTTCTCTAGAATGCTGGATACTCAGATTGAAAAGATTGTCCTCTTTCTGTTGGAACAACAAGGGCTACTAGCAAGCAGGATAGCCAAGCTTGGAGAACAACATGATGCTCTTCAGCAGCAGCCAGATATTTCTCAAATATCTGAACTACGAGAAGCTTATAGAGCAGTGGGACGAAATCTGGTAAAGCTTCTTTTTTTTGTGAGATAAATGCTAATGGTTTGCGAAA | |||||||||
gi|110361681|gb|EC925173.1|EC925173 WIN027.TB24.1_P12 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA TTAGATGATCATCAACAAACA EST sequence (targeted fragment marked with yellow): ACTTCATTTAGCTGAAGAGAGGAAAAGAGTATGGCAAAAGATAGGAAGATAGGGGTGGCAGTGGACTTCTCTCAGGGCAGCAACATAGCTCTGAAATGGGCCATAGATAATCTACTAGACAAGGGGGACACACTCTTCTTCATCCACGTCAAGCCTTCCCAAGGAGACGAGTCTCGCAACCTGCTCTGGTCGGCCACTGGTTCACGTATGTAAAGCTTTTCATTCTCATCAGAGTCGCTCATCATGCATGATTTTTTTTTTCACTTCCATCTTCTTTGATTTCCTTGTTGATGATCATCTGGGGTTGTAGCTTTGATTCCATTAGAGGAATTTCGTGATCTGGATGTGGCCCAGAAGTATGAGATCAACCTTGATCCTGAGTTCTTGGGTATGCTTGCCACTGCTTCTAGCCAGAAAAAGGCGAAGATTATAGCAAAGATTTACTGGGGTGATGCAAGAGACAAGCTTTGTGATGCAGTTGCAGAGTTGAAGCTTGATTCCTTGGTCATGGGGAGCAGAGGCCTTGGCACCATCCAAAGGACATTTCTGGGGAGTGTGACCAACTATGTGATGGTCCATGCAACTTGCCCTGTGACCATCGTTAAGGATCCGAGCAGCCATGGCTTCTGATTTCATTTCCTGAATCTGATCTTACACAAACCGAGGTGGGTTCATGGATTCTCCCCAGAAATCCTCTGTTGAGATCATCTTCAAAGACAGTGGTGGTATGTACTAGTGTTCTTTTTAGTATTGCTTACTGTGTGTTCCAAGTATTAATTCATTTGCCCTTTGTTCTTTGTATTGATTGCATAAGTTTCTGCAAATCTTCAAGTCCCTTGTACCAATATCAATAAACCAGATTTTGTAGTT | |||||||||
gi|161714798|gb|FC063246.1|FC063246 sT7aVVM006H01009 VVM Vitis vinifera cDNA clone VVM006H01009 5' similar to emb_CAN79081.1 hyp TTAGATGATCATCAACAAACA EST sequence (targeted fragment marked with yellow): TCCCCTCTTTCTATTTCACGCTTCCCAGAAATCCGTTGGAAGCTTCAGAGAAGAATTGGGTAATGTTCAAGACCGTGATCAGTCCTACTAGTTTCTACACCTGAAATTTTCAAGAGGACGATTAATCGAAGCCGTTTTTCTTCGATCATGGGTGATGATTACGCATCACAGTCTTCGCAGAGTTCGATCTCCAAGAAGCACAAACAGAATGAGGTGGTTCTCTCTGATGGAATCCACATTGAAAGAGATGAAGGTCCAACTGGGTTATCTATCACTGAGGAGAAAGTTGTGACGGGTGGGAACAAGGGGAAATCAAAAATAGATTGTGATGAGACATGGCAAAACCAAGCTCAGGTTGCTTTGGCCAATGATGTTCGAAATCCTACCAGTGAAGCAGGATCAGAGGACAGTCCTGATCCTCTTAAGAGCTTTGCATCAGGATCAAGTGACTTAATCAATATCAATGGTTTCAATTCTGATTTGTCCTATCATGATGATGATGCTATTGATGACGACGACGACGATGATGTTTCTGGTTATGATGACAATGATGATTTTTTGTATGATGATGATTATTTAAAACTGCAAGCCCAATTTGATAATGTAGATATACCTCCTGGAGTAGAGGCATCAGTTCCTTGGTTGAAAGACCCTACTCCGAGTGAAAAAATGCCAGCTGTTGTGGACACT | |||||||||
gi|110701003|gb|EE078150.1|EE078150 S2B20658 Buds (VvS2) Vitis vinifera cDNA clone S2B20658, mRNA sequence TTAGATGATCATCAACAAACA EST sequence (targeted fragment marked with yellow): TGACAAAGCAGACCTGAAAAAGTTCTTTCCCAAGTAAGGCAACCATTTTCTTTCTTCTGGTGTAGATGGTTCCTTCACTTAGAGCCAATGTTTGCACATTGAAGTGGGTTAAAAGAACTTCAATTACAGTGAAAATAAGCAGCTAAAATAAGTGTTCACTAATCTTCCCTTGTTTTGTGATGATCATCAAGGTCATGGTGTGATCGGTATGGAGATGTGGTGTTGGATGTGGTGAAAAAGGAATTCAAGGATCACGTGGGAGAGATGGAGAGTATGCGAAATGCTGCCAGAGAGAAGCGTGGCCACTCAACCAGATGGACAACCTTTGAAGATGATGAGAATTGTCACCCAAATCTCTTTGCGCATCAGGATCATTCATTCCAGATGAAGCAAACAAAGCTCGCCCCCTCCAAGGAAGATTACTCCTATATCAGCAACATCGATAGCAGTAACACCAAGTGCTTTGAAAACAATCCCTTCTTTCATGACTACAGTGATGGTAGAGGTGAAAAGCCAAGGTCTGAATTGGGTTTTTACCAGGACCAGAACCAGAACCCCTTCTGGAGTCCAAAGCAAGGATCTTCCGTGATGGGTTAAATATAATANGGCAGTGCTGGTTTGTTGGCACCGAGAGGCCGCGCTCGGAAGTATGCTTTTATCTTTACTCATTTTCTTGTCATCGCATGAACAATGAAGAACTCTGTTCTTCGACTTATGTAGAATTCCACCTATTACATTTGTAGATGGGACGTTCTATTCCCGGTTGTTTCCCTCAAAATGGCA | |||||||||