| mature miRNA: TTCCACAGCTTTCTTGAACTG species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|156724611|gb|EV228722.1|EV228722 VV_PEa015a01.b1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CCCCAANNNNNNCACAGGGATGGCATTACGGCCGGGGTTGTAAGACGGAGCCTAGTTTGATCCATGAAAAAGTTGGTAATGAAATTGCCCATTGTTCTAGGACAGCTTTTGATGGGAGTTCTATGTCTGAGTTAGGGTTCTGTGGGATATTGTCTCCCCATTTTTCCTTTGACTTCCAGGTAAAGGTTCTTCTCTAGGTCATCAGATGTATCAGTGAACTTTTGCAAGTTGAGATGTAGAGGGTTTTTTCTTCCTTGCAATATCATGCTTAAGCAGCCTGGCAATTTTTTTTCTTTATTCAAATTACTCCATTTCAATAATGGTATGAAAAATCTTATCTGAAGAAATAGGTTGCATGGGGGGGATCTGCAAGTTTTCAAGGCTGGGCTGATGTTAATGAACTTCTTTCCTTTGTATTTTCTGGGGATTTTAGGACAAGTTGGCTTTCACTTAATGTAACGAAGTCATATGATTTGTTCATCCATATCTGGCATTTATCTTGAACNAAAAAAAAAAAAAAAAAAAAAAAAAAACATGTCGGCCGCCTCGGCCCAGTCGACTCTAGACTCGAGCAAGCTTATGCATGCGGCCGCAATTCGAGCTCACTTGGCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGGAGCACATCCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCCTTCCAAACAGTTGCCCAGCCTGGATGGGCGAATGGAAATTTGGAAGCCGTTAATATTTTGTTAAAAATCCGCGTTAAATTTTTGGTTAAATCCACTTCATTTTTTTAACCCAATAGGGCCGAATATCGGGAAAAATCCCTTTATAAAATCAAAAAAAATTAACACCGAGATAAAGGGGTTGAAGGGGTTTTTTCCCAATTTTGGGAAACCAAAGAATCCCACTTAATTAAAGAAAGCTGTGGGACTTCCACACGGTCAAAAGGGGGGAAAAAACCCGTTTTTATTGGGGGGGGGGATGGGCCCCCTTACCTGGGAACCCCTTTACCCCTAAATCAAAGTTTTTTTTGGGGGGCCAAGGGGGCCCCTAAAAAACCTATAAATCGGAAAACCCCTTAGAGGGGACCCCCCCGATATTTAAGAGCTTTGGACGGG | |||||||||
gi|83274455|gb|DV938552.1|DV938552 CSECS180A11_INFu0031 CabSau Immature Inflorescence Stage 31 (INFu0031) Vitis vinifera cDNA cl TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TAGTACATATCTGAATGATATGGTTTTACATAGGCTGAGAACCCTGGCTTCTATTATGCAATCCAACTTGATGATGAAAACCGTATGACTAATGTTTTTTGGGCTGATGTGTTTGGGGAATAGTTAATCCTTAAAACCAATTCAGAGTGATGGAAAGATTTGATGTGGAAAGAAAGGCTTTTCAGGTAAAGTTTGAAGGCATCAATGGGGGAATGTGGCTTTCAATAACTGAGAGAAGTTGAGGTTTTGTTGTTTCGTTAGGATTTGGAGAGGAGGAGTTGGATTGGTTGTTGGAACATTTGAAGAAAGCTGTGGAGTTGGAGGCTTCCGGGGGTTTTACTCGGAAGATTAGGGGCAAAACGAGGACGCATTTGATGGAGATTTGCTTCAATAGTAGAGGAAGATTTATGAAAATTACAGAAATTGTTGCAAAGAGAAAATCTCTAGTGCTAGTTGTTCCTGAGGGTGTTAAAGGCAATGGGTGGGAAACCCTTAGAATGGCGATTTCTAGAGTCCAAGATGTGTCTGATCAGGCTGTAAGAGCCTCGAAGGAGAAGGATAAAGAGTCTCAGGTGAGTAAAGGAATGTACAGAGAAGGGCGGTCCTATGCAGATGTGGTTGCAGAGAAAGGACATAGAAACGGAGCTTCAATGCCAGTTGGAAGATGGGCAAGAGCTGTAATTTGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|161708451|gb|FC057876.1|FC057876 sT7aVVM_AER39F04 VVM Vitis vinifera cDNA clone VVM_AER39F04 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GAGAAATTGTATGGGCATGCTTCATTTCATCATCTCCTTCCTTTCTCTTCCTCCTCTTTCTTTCCATCTTAATATTAACGTCACGGTGGAAATTAAAGACATGTGAGAGTGAGAGTGAGAGTGAGAATGAGAGAGATTCATGGAGATGAATATTATGAGATTAGCAACTTTTTCTCTCTGCAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTCTTCTCCCTGTTTGGTGGTCTCCTACGTTTACCCATCCACTGAAGTTCAAGAAAGCTGTGGGAAACCATGGCTTTTCAGGACTTCTGCTTGCTGTTTTGGGCTGCGATGATCAATTAATGGTCTAATTCCATTTTCCTTTTGGTGCATTCTTCACGAAAAAAATGACAAGGTTTGGTGGAAGGATGCTGCTCCAGTGATCTTTCCATACAT | |||||||||
gi|110405587|gb|EC971130.1|EC971130 WIN103.C21_M22 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCAACAGTTATGTCTAGCCTCACATGTTCAGATCTATCTCCTTGCCTGAATCAACGACATCGCCGGCTTTGCAAATCCTACTCTTTATTTTTCTCTTCACGTCGTGTTCTTAAGATCAAGCACCAAAACCCCATCTTGGGAAATCAAGAATCATACCAATTCAACATCCCATTCGAGTTCAATGCTAGATACAAAGCCATTAAGGCAAAGGGAGAGTCAGACGATCTCCAACCAGAGGATCCAGTTCCACCGGAAAAACGGTCTTCCCCTGAATGGAAGAAATGGATGGTGGTGATAATGTTATCTATAATTCTACCTTCATATAGGCACAAATGGGGACCATTAGTTTTCCTTCGAAGTAAGGTGGACGAAACCATAGAAACAGTGGAAACTGTGACGGATATTACTGAAGATTTGGGTGAGGATGTAGAGAAGGTAGCTGAGGCATTGGAAAACAAGATTCCTGACCAGGAGGCAAAACTCAAGGAAGCTGTGGAAACAATTGACCGTCTAGCGAAAGATGTAGTGAAGGAGACTGAAGAAGCCAAACGACTCATTCAAAAGGTGGAGGACGCTGAGAAAAAGGTGGAGAAAATTGTGGGAATTGAGGAGGAGAGAGAAAAGAGATAGAAGGTTTTGTTTGGAATTGTTGTACCCTTTTTGAGAAGAAAAATCGACAATATTATTATTAGTGGAATGGTATTATGGTAGCCATTTTCACTGAGCAAAAAAAAAAAAAAA | |||||||||
gi|110413950|gb|EC979769.1|EC979769 WIN112.C21_N23 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clon TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTAACACTTCCAAGTCTCATCTTACTGTAATTTTATATATCTATATGTTCATACATACACCAATTTATTTAGCAGTAACTTTCATATGTAAGTTCCAATTCAAAGAAGCCGTGGAACTGAAGTTCGTGTCCTCTGTACAGAAATCTTAAGGCTTATGATGTTGGGTATAAATGTAATCCAAGTGAGCCTCTGCCACCATCCTTCTCTTCAGACATTCTTCATCATTCTCATGACATTTTTCCAACCCCATCAGATTCAGCACATCCTCCCCTTTTGATGTACCTGCATGAGTCATCCACTCACCCATCACCACCTGCTCATCTTGTTTTGTTGCAAGGAGACGCGCAGATCCTGAGTAGGAGTAGAGAAGAAAAAGAAAGAGAGTGAAGATAATAAACACCCAGGAATTTTGCTTCATTTTGCGTGTGA | |||||||||
gi|110424983|gb|EC991358.1|EC991358 WIN1142.C21_E21 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): ACATGTTCAGATCTATCACCTTGCCTGAATCAACGACATCGCCGGCTTTGCAAATCCTACTCTTTATTTTTCTCTTCACATCGTGTTCTTAAGATCAAGCACCAAAACCCCATCTTGGGAAATCAAGAATCATACCAATTCAACATCCCATTCGAGTTCAATGCTAGATACAAAGCCATTAAGGCAAAGGGAGAGTCAGACGATCTCCAACCAGAGGATCCAGTTCCACCGCAAAAACGGTCTTCCCCTGAATGGAAGAAATGGATGGTGGTGATAACGTTATCTATAATTCTACCTTCATATAGGCACAAATGGGGACCATTAGTTTTCCTTCGAAGTAAGGTGGACGAAACCATAGAAACAGTGGAAACTGTGACGGATATTACTGAAGATTTGGGTGAGGATGTAGAGAAGGTAGCTGAGGCATTGGAAAACAAGATTCCTGACCAGGAGGCAAAACTCAAGGAAGCTGTGGAAACAATTGACCGCCTAGCGAAAGATGTAGTGAAGGAGACTGAAGAAGCCAAACGACTCATTCAAAAGGTGGAGGACGCTGAGAAAAAGGTGGAGAAAATTGTGGGAATTGAGGAGGAGAGAGAAAAGAGATAGAAGGTTTTGTTTGGAATTGTTGTACCCTTTTTGAGAAGAAAAATCGACAATATTATTATTAGTGGAATGGTATTATGGTAGCCATTTTCACTGAGCAATCCTGCAAGACTCATTCTTATAGCTTGAATTCTAAAAAAAAAAAAAAAAA | |||||||||
gi|110700163|gb|EE077887.1|EE077887 S2B10649 Buds (VvS2) Vitis vinifera cDNA clone S2B10649, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CTCTTCGCAGATTTGATCCTTCCGGACCTGCATCGAACATTCTTCTCGTCACGACAAGCTTTTTCTTCCTTGTTCTCTTTCTTTTTCTCTCTGCACTTCTTGCCAATTGCTTTCCACTGTATGTTTGAATGGTTTGAGAAAGTTGTGGAAGGTGGGGTCATATTGAATAATGGGCAGTAGTGAGATGGATAAGGCAGGGAAGGAGAAGGAGTCAAAGACACCGCCTACTACTACACAGGAGCAGTCTTCAACCACGAGCGCTGGAACAGTTAATCCTGATTGGTCTGGATTTCAGGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGCATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGGGATCTTATCCTTTCAGTCCTTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGACCTCTGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATATGCTTACAGGCAAGAATAATGAACTTGGTAAAACATCANGAGCATCTGCTAATGGAGTGTATTCTAAAAGTGCTGAAAGTGCTAGTGAAAGTTCAGCGAAAGGAGTGATGCAAA | |||||||||