| mature miRNA: TTCCATCTCTTGCACACTGGA species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110708756|gb|EE086661.1|EE086661 S5B02414 Fruits 7-9 mm treated with GA3 (VvS5) Vitis vinifera cDNA clone S5B02414, mRNA sequ TTCCATCTCTTGCACACTGGA EST sequence (targeted fragment marked with yellow): CATAAACACCCCCGGAAAACCCGAAATTGCCACATCTGTATTCTCCTCCATTTACTCTCCGAAACACAGTCGTTTTGACTCACTCCACACGCTACTCAGCCATGGACGGAGGCGCAAACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGATGTGGACGAATTTTATCAGCAGTGTGATCCCGAGAAGGAGAATCTGTGCCTTTATGGATTTCCAAATGAACTATGGGAAGTCAATTTACCTGCAGAAGAGGTGCCTCCAGAACTCCCAGAGCCTGCACTAGGGATCAACTTTGCAAGAGATGGAATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTGCTTGCTGTTGCCTTCTATTTTGGTGCCAGATTTGGATTTGATAAAGCTGACAGGAAGCGGCTCTTTAATATGATAAATGATCTGCCAACCATATTTGAAGTTGTGACTGGTACTGCAAAGAAGCAAGTAAAAGAGAAATCATCAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGCCACAGCAACAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATTCTAAGACCCACCAAAAGGATGAAAAAGAAGGG | |||||||||
gi|110383514|gb|EC947892.1|EC947892 WIN0543.C21_A16 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone TTCCATCTCTTGCACACTGGA EST sequence (targeted fragment marked with yellow): GGGCAAACAGCCTCATCCTCAGAAAGGCTGGTGGTGTTCAAATAGATGATCCAGTACAGGAGGTCTTCAATGGACAAGAGATGGAAGTGTGGCCACGAATCACATGGAAGCCAATATGGGGACTGACATTTTCAGAGATTAAAAGAAAAATCAGTGGAAGCTGCTCTATTTCTCAGAGGTCTACCTTGGTTATTAAGGGCTGTAACATCTTTCTTGAGGATCTCTCCTTGGATGGAACTCTTGTTGTCAACTCTGTTGAAGATGCTGAGGTCAAAGTGGGAGGCGTGGTGCAAAACAAGGGTTGGATTCTGGAAAAAGTTGACTATAAAGATACTACAGTGCCTGAGGAGGTAAGGACCAGGGGGTTCAGAATCAAAAAAGTAGAGCAGCTGGAAAAGAATTAGATTAAATGACCCAGTGAAGTTCCAGTTCAGGCCTTGGAAGGGGAACTTACTCAGAGCAAATAAAAGGTATTTGATGCTAATAAAAGCTTTCTTTATTTTTCAAGAAATAAAGATCTCTCCCTTTTGTAACTCAATATTGTATACTAGTTGATGGTTCACCGAAATAATGAGGAGATTGTAAGCTGTCAGGTGGGATTGTTCCCCCGTTTTTGTTTCCTTTTCCTTTTTCTTTGTCTGTTTTGATAATTCTTTCCAATTCTCGACAAGGACTGAGAAGGCAAATGAGTCCACAATAAACTATCTATGCCGAGGCTTCCATGGTTATCTTAGTTCTGTTGAGAGGTGAA | |||||||||
gi|110364732|gb|EC928203.1|EC928203 WIN032.C21_G04 Cab Sauv seed normalized (WIN03) Vitis vinifera cDNA clone WIN032_G04 3', mRN TTCCATCTCTTGCACACTGGA EST sequence (targeted fragment marked with yellow): CTGCAGTGAGACCCTGTGTTCAGAGCGGGTTACACAGTTCCTTGATGCCAACTTTGTTTCCTGGGGAGCACTCGCAGATAGAGGAGAGGGTTTGCACATGGCTGCCACACTGAGGCCTGGCAGCTTCCCATTCTGCGCTGTGGTAGCTCCTGCTTCGGGTGATAGCCTAGCAGTCCTGCAACAGATTGAAGGGCCAATTAACCCAGCTGAATTGGTGGAGATTCTACAAAGAACAATGGAGGAGCAAGGGCTGGCTTTTGGCAGCAGCTCCAGGGCTGTGGAGGAAGAAAAGCGGAGAGCAGATCGTCGGCTGAGGGAAGAACAAGATGCAGCATATCTTGCTGCTCTTCAGATAGACGAGGAAAAAAGTAGACCCAAAGATTTACGCTCAGAACAAGTAGTCCAGAAAAAACCAGTACAAGCAGCAAAGCACAATCCCTCGAAGAAACAGACTGGTAAAAAGGTGAAAGAGGCCACCACCGTCACAGAAACTCCACACAATGAAACTGCAAATGAAGAAAAGGATTCAAGGGTTACCCAGATACTGATTCGGTTTCCAAATGGGGAAAGAAGGGAGCATAGCTTCTCAGTCATGGATAAAGTCCAGTCGGTTTACAGGTACATTGATTCTCTGGGCTTACCCGGAGTGGGAAACTATAGACTGATATCAAGCTTCCCAAGAAGGGTCTACAGTGTAGAAGAGATGGGAATGACTCTCAAAGATGCTTGCCTTCATCCTAGAGCAAGCCTCTTCCTTGAGCTTCTGTAACATACTTGTATGGCAATTTCCTATACGATCTTATGCCATAATATGTAAGACATGCTTTTCTTTTCTTGTTAATGATGAATTCATGATCAAA | |||||||||
gi|161713065|gb|FC062146.1|FC062146 sT7aVVM003D06029 VVM Vitis vinifera cDNA clone VVM003D06029 5' similar to emb_CAN65288.1 hyp TTCCATCTCTTGCACACTGGA EST sequence (targeted fragment marked with yellow): GCAGTGAAAGTGGCCGGGCTTTAGTCTCTCACCATTCAATTTTGATCTTTGAGGCTGTTTCGGCAAGTGTACATGATTCACCTGCTACTTCACTCAGTTTACAGCGCTTTGTGGAAGGACTTTCTGAGGAAGCCCGTGTTGATTACCAGAATCTGGCTGCTGCTGCAGTTAGTGGCGAGTATGAGACTTGCTTGCGTTTTGCTGATCAATTGAAGCAAAGATGTGTTGATCAATTCAAGGAAGGGTCGTTAGGTATTGAACAGCTTGCTGACGTTGATGGGCTGTGTGACTTGGTTTCCAAGGAGGTTGGTGCCACTGATCCAGTGCGCACTTACCATGTGAATTTATCAGTCTTCACATGTATTCCTGATTTCTGGGGTATTGGGCAGCTGTTCCCTATAGTCCCCATTCACCGACTCGACCAGAGGCCTGGGGCGAGGGGCATTTTATCGGATTTGACCTGTGACAGTGATGGGAAGATTGATAAGTTCATTGGCGGTGAGTCAAGCTTGCCTCTGCATGAACTAGAAGGTTCAGATGTTGTTTTTGGTGGTAGTGGGAAGTACTACTTGGGGATGTTCTTGGGCGGGGCTTACGAGGAGGCGCTCGGTGGTTTGCCAATCTGTTTGGTGGCCGAGTGTGTTCGGGTGTGCAAGCGATGGACTCACGCTCGCAGTGCGCGTGCATGCAGGCCTTCTGC | |||||||||
gi|110385832|gb|EC950388.1|EC950388 WIN0549.C21_H22 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone TTCCATCTCTTGCACACTGGA EST sequence (targeted fragment marked with yellow): CAGAGCCTGCACTAGGGATCAACTTTGCAAGAGATGGAATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTGCTTGCTGTTGCCTTCTATTTTGGTGCCAGATTTGGATTTGATAAAGCTGACAGGAAGCGGCTCTTTAATATGATAAATGATCTCCCAACCATATTTGAAGTTGTGACTGGTACTGCAAAGAAGCAAGTAAAGGAGAAATCATCAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATTCTAAGACACCACAGAAGGATGAAGATGAGGGCTTGGAAGAGGAAGAGGAAGACGAGCACGGCGAGACATTGTGTGGAGCATGTGGCGAGAACTACGCATCAGATGAGTTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCAGCTAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCATGCAGCAACAAGAGATCTCGCCCCTGATATATAAAACTAATGATTATATGGTGTTTCCACCGTTGTACTCTTCTCAGTGGATCATCTTTAACTGCCTTGCCAGTCAGGTTCCTTCTTTCCTTCCTTGGTGCTGTATTTAGCGAGACTTGTGAATTGAATTGCTACTTTAGTTTCGGGGATCTCAGTTGATATAATACTATTTATTTGTAGTTTGGTGAAAATATGCTCCTGTTTAATTTGAAACATCTTATTCTCCCTTGCAAAA | |||||||||
gi|294966862|gb|GW839737.1|GW839737 Summer_Black_3134 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence TTCCATCTCTTGCACACTGGA EST sequence (targeted fragment marked with yellow): GGGGACAGCAACCAAATTCCATTAGGCCTAGGGTTAGGGTTTGTGAGATGGGCGACCGTACAAGCTCTGCTGTGACTAAGCCAATATGGATGAAGCAAGCGGAAGAGGCAAAGATCAAGAGCGAGGCTGAAAAAGCCGCCGCCGCCAAAGCTGCCTTCGAAGCCACATTCAAGGATGCCGCCTCCGCCTCCGCTCCTGCGGTGGCCGACTCCTCCTCTTCTGACAGTGACGACGCTGAAGAAGACGCCGAGAGTCGCCTCGCCAGCAAGCCCATCGGCCCCGTCGACCCCTCCAAATGCACGGCTGCTGGCGCTGGAATTGCGGGCGGGGCCGCCTGTTCGGCTTCGTCGTTCGTCGTCGTGACCAAGGATTCCGATGGCAGAAAGGTTCCCAATGGTGGCGCTCAGATTAGGGTTAGGGTTTCGCCTGGAGTGGGCGTCGGCGGATCGGACCAGGAGGGCATCATCAAGGACCAAGGCGATGGCAGCTACACTGTCACATATGTAGTGTCCAAGAGAGGGAATTATATGGTACACGTTGAGTGTAACGGCAAGCCCATTATGGGTAGTCCCTTTCCAGTTTTCTTCAGTGCAGGTACTGCTAGT | |||||||||
gi|161717588|gb|FC066262.1|FC066262 sT7aVVM015E20076 VVM Vitis vinifera cDNA clone VVM015E20076 5' similar to emb_CAO44002.1 unn TTCCATCTCTTGCACACTGGA EST sequence (targeted fragment marked with yellow): GTTTACAGTTTGCTTGTCAATGCAGACCGACGGTGGTTGCTGTGCTCCCACGGCCAGTAGGAAGAGAAAATTCCCTTTGGATGATCTCAATCAAGACCTCCTCGAAAGGGTTCTTTCGTGGCTACCGACCTCCGTCTTCTTCCGCCTTACTTCAGTGTGCAAAAGATGGAAATCAATTGCAGATTCTGCAACTTTCCAGCTAGCATGTTCCCAAATCCCCTCCAGGGACCCCTGGTTTTTTATGGTTGATCCCCACCTCAACCAATGGGTCGTCTTCGACTCCGCCGAACGGAATTGGAAAACCCTCAATCACCCACCCCTCCTCCAGCTCAACCCCAACATCAATTCCATTCCTGTTGCAGCTCATGGCGGATTGATCTGTTTCCGAAACTCCTCCGGCCACTACATTGTCTGCAACCCCGTGACAGGCTCCACCAGGCAACTTCCTCTGCTTGATAAACCCCCACAGAATCAATCCCTTCACGCCATTGCGATGAACTCGTTTTCCACATCCCACCACTCATACAAGCTTGTGCTGGTGTATGGTGAACTTTCCTCCCTCACATTTAGAATCTATAACTCAAGCGTGAACCTCTGGGAAGAAGAGATCAGGCTGAGCAGAAAGGCTGAAAACCCTGAAACCTCTTTCCAATCCGACCCAGATGATGATGATGAAACTGTATATTTCCTCAGTATTACGGGCAATGTAGTGGCGACCAA | |||||||||