| mature miRNA: TTGACAGAAGATAGAGAGCAC species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110378490|gb|EC943626.1|EC943626 WIN0529.C21_G21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGTCTGCCCCATCTCGATTCCTTTGGTTGCCTTCTCTTCTTCTCAAGTATGGAAATGAGCAAGGCTCAAGGTAAGAGAACCTTGATGGAGGAGGAGGAAGAGGATGATGAAGATACTGTTGGGTTAGGGTTTGGAGAGGATGAGAAGAAGAAGAAAGCAGTGACCCTCACCAACAAGAAAGGATCTGGGGGAGCGGGGTCAACCCGCCTTCTTGTCAGGTGGATAACTGCACCGTTGACATGTCCGATGCCAAAAGATACCACAAGCGGCACAGGGTGTGTGAACATCATGCCAAGGCTCCGGTCATTCTCATTGCCGGAATCCAGCAGAGGTTCTGTCAGCAATGCAGCAGGTTCCATGAGCTATCCGAGTTTGATGACACTAAAAGAAGTTGCCGCAGGCGCTTGGCCGGACACAACGAGCGGCGCCGCAAAAGTTCATCTGAATCTCATGGGGAAGGCTCCAGCTGAAAAGGGAAGACCCCTCATCTAAAGGAAGAACTAAGTTGCAGCAGGCTTTGGTAAAATGCATTTTCAAAACCTATAAGGTTTAACTATGCTATCTAGTATGCTCTCTATCTTCTGTCAATCTCCGGCTTTCAACTTTGAATGATTATGTAATATTGAACCAAAAACAAATGACAGCACTGTGGTCATCCATCTCAGTACTGCTGTCTCTGTTGGCATCTGAGTCGTCTGTGACTCAAGATCGTATGAATAAATGGTGTGTGGAATAACCCTTTTGAATAAAAAAAAA | |||||||||
gi|110366222|gb|EC929987.1|EC929987 WIN048.C21_B12 Cab Sauv pericarp normalized (WIN04) Vitis vinifera cDNA clone WIN048_B12 3', TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): AGTATGGAAATGAGCAAGGCTCAAGGTAAGAGAACCTTGATGGAGGAGGAGGAAGAGGATGATGAAGATACTGTTGGGTTAGGGTTTGGAGAGGATGAGAAGAAGAAGAAAGCAGTGACCCTCACCAACAAGAAAGGATCTGGGGGAGCGGGGTCAACGCCGCCTTCTTGTCAGGTGGATAACTGCACCGTTGACATGTCCGATGCCAAAAGATACCACAAGCGGCACAGGGTGTGTGAACATCATGCCAAGGCTCCGGTCATTTTCATTGCCGGAATCCAGCAGAGGTTCTGTCAGCAATGCAGCAGGTTCCATGAGCTATCCGAGTTTGATGACACTAAAAGAAGTTGCCGCAGGCGCTTGGCCGGACACAACGAGCGGCGCCGCAAAAGCTCATTTGAATTTCATGGAGAAGGCTCCAGCTGAAAAGGGAAGACCCCTCATTTAAAGGAAGAACTAAGTTGCAGCAGGCTTTGGTAAAATGCATTTTCAAAACCGATAAGGTTTAACTATGCTATTTAGTATGCTCTCTATCTCCTGTCAATTTCCGGCTTTCAACTTTGAATGATTATGTAATTAAGAACCAAAAACAAATGACAGCACTGTGGTCATCCATCTCAGTACTGCTGTTTCTGTTGGCATTTGAGTCGTCTGTGACTCAAGAGTCAAGATCGTATGAATAAATGGTGTGTGGAATAACCCTTTTGAATAAAAAAAAAAAAAAA | |||||||||
gi|110370984|gb|EC934656.1|EC934656 WIN051.C21_P05 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone W TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGAAATGGTAGCGGTGGCCAAAAAATGTTCTCTGATGGGCTAAATCGAGTGATCAGTTCTGATCGTGCTCTCTCTCTTCTGTCATCGCCGCCGCCTGAGACTCAGGAGATTGGTTTGAGCAGGATGGTGCAGCAAAACCCAATCCCCCCAGCTCAATCCTTGATCCCCAGCCTGCACTATACTGGTTTAAGCCAGTATGCTTCCTCCCAAGGAATGGGTGGGTCAGTCGGTTCTGTTTTGGTCTCTGATGGTAGCAGCAATGCCAACCTCCATTGCCCTGCAATTTTTCAGCTTGGACCTGATGGCTCGTCTACCAACAGTCCTCATCAAACGCTCTCGTTCTCTTGGGAGTAGTTTATGCCACTAAGAGTTCTCTTCCATTGTCAAATGGGTTGGAATTTTTTTGCCCCATGAGGAATAAATCTATTCCCTTGCTAAACAGTGGGATTTCTGTGATATAGTTTTAAGTAATGTACTCTCTCTCTCAGAATTTATCCCTTTTGAACTGTGGAATTTCTCAGTTGACAATGAATTGGGGAGCAGGTTCTACTTATATATATATATCCTTTCCCTTTCTGGAAAGAAAAAAAAAAAAAAA | |||||||||
gi|254916919|gb|GR905745.1|GR905745 345j_C04_006 ovule cDNA library of a seedless grape (Vitis vinifera var.Thomson seedless) Vi TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGACCACTGCGATCCCATGGTTTCTTCCACATCCATGGCAGAGCAACTCTGAGAACCCTCTCTTTCTGCAAGGTTCAGCAGGCGGGACCAGCTTTCATGGTCCTGGAATTCCTTCAGGAGAATGTTTCACAGGGGCCTCCGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAGCCATGGAGCTCCAGGAATCGAGCATCTGGTCTTGGAGCAAACAGCTTCATGAATCCTGAAGGGGCATCCATGGCGCAACCCACAGCTCCTCATAGTGCAGCTATCAATCACTTCCCAAGCACCTCGTGGGATTTCAAGGGCAATGAAGGTAGCAGCAGTTCGCAGGAGATGCCACCTGATCTTGGTCTTGGTCAAATTTCACAGCCTATTAATAGCCAGTTCTCAGGTGGGGGCGAGTTGCCCCAACAGAGTGGAAGGCAATACATGGAACTCGAGCACTCCAGGGCTTATGACTCTTCCACTCAGCAAATGCACTGGTCAACTTTAGGTGCCAACTTACCATCTGGTTTGTATGAACACCTTTAACAGCTTTGGTTCAAAAAAACTACTTACGAATATCCTTCCAGTGGATACCTCCTGATCTTGTGTTTTGCTATGAAAAAAAACCAAAGGGTCCTTGATCATTGTTTTTGCTGGGAAAAACCTAAATGGGTCCTTGATTTTTGTTTTTGAGACCTAAATGGGAGCTTGATCTTTTGTTTTGCTGGGGAAAACCTTAATGGCTCTTTATCTGTGGCTTGGTTTTGAGTTTTCTCAATACTGAAAAAAACAAAATTTAATCTTTGGTTTTAATTGCCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|110359458|gb|EC920969.1|EC920969 WIN012.BR_O07 Cab Sauv pericarp non-normalized (WIN01) Vitis vinifera cDNA clone WIN012_O07 TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CAAAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTGGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCACAATGAACGTCGGAGGAAACCCCAAGTTGGTATTCACCCTGGCAGGGCAGGGAGGTTGCTTCAATCATATAACGGCTATGCAGGTAATAGATTTCAGGGGACTACACTAACAACCGCATCCTTTATATGTCAAGATATACTCCCCAGTGGTCTATTGCCACCAGAGAAATATGGGATGAGTGACTGGTGCAAGCGGATAAAAGTTGAAGATGGAACTGACTATAGTCCTCAATCAACCATTCCTATAACCAATGGGCACCCACATCCAAAGTCCCTATTCCCTACTTTTGAATTTGAAAAACAATATTCTTCCTTTCAAGACAATGGAGCTAATACAGGAAGTATTTTCAGTGAACACAATAGCCGATATCCACATGATCTTGCAGATGCAAATTCTGGCCCACATTCTTTTTTCCAAGACACCTCATTAGGAAATGAAGACTTGTCTGTTTTTGACGCAGGATCTACTGTTCAGGCCTTATCAGGGATTTCAGACTCTGGTCGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAACTCTTCCAGCCATTCATCAGGAATTCCCATGATTCACCCCCTGATCATGCCTGGCTGTCATGCCCATTATAATATAGCTCAAGTCTCTGAGAAGTTCTTGGGAGTCAGCCCCCAGGTTTCAATGAGTAGGGTGCCAAATAAGTTTCTTTCATCTGGGATGAATTCTGCAGAAGGGAATCACCTAGGTCCTATACTAATTTC | |||||||||
gi|156738207|gb|EV242328.1|EV242328 VV_PEd05e01.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): AACATGACCACCGGGGCGGCCGCTCAGAACAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGATGCAACAGTGTAGCAGGTTCCATAGTTTGTCAGAGTTTGATGAAAAGAAGAGAAGCTGTCGCAGGCGTCTTTCTGATCACAATGCACGCCGGCGCAAACCACAACCAGAAGGGATCCAGTCAAATTCGGCAAGGCTTTCATCATTCTATGGTGGGAAGCAGCAAATGAGTCTTGTGTTGAGCTCGGTCCCCATTGTTCATACAAGGCCTGCTGTAAATCCTTCATGGGAAGGCACATGCAGCAAGTTCACACAAACAAAAGGGTTAGTAAGGCCTGGTAACACAGGAGGTATCGACCGGCAGCTGCATTTGCCTGGCAGTGAACTGCAGAATGGCATTAGTACGCTTTGTCATGATTCCAGTAGGCTTTTGCACTCTAAGGGTGCAATAGCTGAGGTTCTCAATCAAGGTCTAGGGGATTCTATGATCTCTTCCAACTTGGACACATCACAGGATCTTCGTCGTGCTCTCTCTCTTCTGTCAACGAATTCTTGGGGCTCATGTGAAACACAACCAATTCCATCTGACCTCCCTATGCATGTAAACCAAACCAGCATGCCTCAATCTATTATGCATGCAGTGTCCCAAGGTATGTTACATTCAACCTCAGAACACTGGAGGACCGAGCTTCCCTCAACTGATTCCCGGGTGCATATCTTGCCTTCACAAGGCGATGGTAACACCCACTTTCAAGAGTTCAAGCTGTTCAAAGCGCCATACGAGTCTGGCTTTTCTTCTGGTCAGTTGAACTGACTCCTTGATTCCAATCCCAGTGTAGGTCATACGTTATGAAAGGTCAGTAGGCTCTTGGATTCACTTTCTAACATCTTCAAATAGTGGAGGGAACCAGGGCAATCCATGGTGAAGACCATTATGTGGTGGGATCACCTGGTTCAAATTGATGCCCAATTAAAATGNCCCCTATTCTTTGCCTGGAGCCCCCCTAATTCATCAAACTTTTGCAAAAGTTTGCCCGGTCCCCCCTTTAATTTGAA | |||||||||
gi|110717325|gb|EE093085.1|EE093085 S7B04714 Berries 14mm with GA3 (VvS7) Vitis vinifera cDNA clone S7B04714, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CAAAGGTTCCATGAGTTGACAGAGTTTGATGACAAGAAGCGAAGTTGTCGTAGGCGCCTCAATGACCACAATGCACGGCGCCGCAGGCCACATCCAGAGACAATCCAATTCAGCTCTGGAAGGCTGCCTTCATCACTATATGATGGCAGACAGCAGATTAATCTTGCATGCAACAGGTTACCAATCCCTGTTGCAACTCCTATGTGGCAAAATCCATGCAGCTTTAAGGACACCCAGACTGGAGGTTCTTTGATTAGGCCTGTAAAAGCAGTAGGCATTGATAAGCAGCTGCATTTGCCCACTGATGAGATGCCGGATGCTATTTCTATGCTACATGTTAACTCAGAGAGGATGTTGTCTTTTGATGGCAGTACACCTCGGGTCCTTAACCAAGGTTTAGAGGCGTCTACAATTGCTTCTAATTCAAATGTAGCACCAGATTTCCGGCGTGCTCTCTCTCTTCTGTCAACTAATTCTTGGGGTTTGAATGATCCTGGACCTACTTCTTTGGACCAGCTCATGCATGTAAACCAAACCAGCATGGCCCAGCCCACGATGCATGCTGAACCACACAATTGGGCTCTTGCTTCATCAGAAAATATGCACGTTCAACAAACACCTTCAGAGACTCGGGGACATTCATTGGATTTGCATAATAATGGAAGCAGCATGTTTCAAGAGTTTCAATTATTTNAAGCACCTTATGAGTCTGGCT | |||||||||
gi|110357673|gb|EC921332.1|EC921332 WIN012.B21_O07 Cab Sauv pericarp non-normalized (WIN01) Vitis vinifera cDNA clone WIN012_O07 TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CACATCCAAAGTCCCTATTCCCTACTTTTGAATTTGAAAAACAATATTCTTCCTTTCAAGACAATGGAGCTAATACAGGAAGTATTTTCAGTGAACACAATAGCCGATATCCACATGATCTTGCAGATGCAAATTCTGGCCCACATTCTTTTTTCCAAGACACCTCATTAGGAAATGAAGACTTGTCTGTTTTTGACGCAGGATCTACTGTTCAGGCCTTATCAGGGATTTCAGACTCTGGTCGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAACTTTTCCAGCCATTCATCAGGAATTCCCATGATTCACCCCCTGATCATGCCTGGCTGTCATGCCCATTATAATATAGCTCAAGTCTTTGAGAAGTTTTTGGGAGTCAGCCCCCAGGTTTCAATGAGTAGGGTGCCAAATAAGTTTTTTTCATTTGGGATGAATTTTGCAGAAGGGAATCACCTAGGTCCTATACTAATTTTTGATTGTAGTGAGCCAGTGAACTTTGAAGTGACAGATGGGATTTTCCAAGGATCAGATTTTGTAAACACTAAGGATTGTTTTCCTTGTGAAACTGGACCCACCATTGATTTGCTTCAATTGTCATCACAACTCCATCGAGTTGAGCATCAGAGGCAATCGATACATGTCAAGCAGGAAAATGATACTTTTTGCCTCCGGATAACGTAAGCACATACCTTGAAAAATTTGCTTCCACATATTTCCATGTTTATCCAGAAACATTGGGGACTTTATTTTATATATATACATGTATTAGAAATTTTGAAAAAAAAAAAAAAA | |||||||||
gi|110727632|gb|EE104615.1|EE104615 SBB06642 Inflorescence (VvS11) Vitis vinifera cDNA clone SBB06642, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CAGATTTCCGGCGTGCTCTCTCTCTTCTGTCAACTAATTCTTGGGGTTTGAATGATCCTGGACCTACTTCTTTGGACCAGCTCATGCATGTAAACCAATCCAGCATGGCCCAGCCCACGATGCATGCTGAACCACACAATTGGGCTCTTGCTTCATCAGAAAATATGCACGTTCAACAAACACCTTCAGAGACTCGGGGACATTCATTGGATTTGCATAATAATGGAAGCAGCATGTTTCAAGAGTTTCAATTATTTAAAGCACCTTATGAGTCTGGCTGTTTTTATCCCAATCAAATTAACTGAGAACCAAGTCTGCTTCCAGTGTCAAAAAGAACTGCAAATAAAGTGTAGTCCGTGTGATGCATTCGAGAAAGCAATAATGGGGATTAGGATGCCTTTTGTCCATTGATCCAAAATATCTTCTCAAATGTATAATGTGTGTTAGAAACAAGACAATGCACCTGCATTATGGTTGAATCCGTTTGTTTCATGGAAAGTGAGTTCTTCTCATGGCTTCTTGCCNNNNNNNNNNN | |||||||||
gi|110428492|gb|EC994966.1|EC994966 WIN1151.C21_O01 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTCTTCTTCTCAAGTATGGAAATGAGCAAGGCTCAAGGTAAGAGAACCTTGATGGAGGAGGAGGAAGAGGATGATGAAGATACTGTTGGGTTAGGGTTTGGAGAGGATGAGAAGAAGAAGAAAGCAGTGACCCTCACCAACAAGAAAGGATCTGGGGGAGCGGGGTCAACGCCGCCTTCTTGTCAGGTGGATAACTGCACCGCTGACATGTCCGAGGCCAAAAGATACCACAAGCGGCACAGGGTGTGTGAACATCATGCCAAGGCTCCGGTCATTCTCATTGCCGGAATCCAGCAGAGGTTCTGTCAGCAATGCAGCAGGTTCCATGAGCTATCCGAGTTTGATGACACTAAAAGAAGTTGCCGCAGGCGCTTGGCCGGACACAACGAGCGGCGCCGCAAAAGCTCATCTGAATCTCATGGAGAAGGCTCCAGCTGAAAAGGGAAGACCCCTCATCTAAAGGAAGAGCTAAGTTGCAGCAGGCTTTGGTAAAATGCATTTTCAAAACCGATAAGGTTTAACTATGCTATCTAGTATGCTCTCTATCTCCTGTCAATCTCCGGCTTTCAACTTTGAATGATTATGTAATTAAGAACCAAAAACAAATGACAGCACTGTGGTCATCCATCTCAGTACTGCTGTCTCTGTTGGCATCTGAGTCATCTGTGACTCAAGATTGTATGAATAAATGGTGTGTGGAATAACCCTTTTGAATAATGCTTTTTGTGATGATTTTTATTCGATCTCCC | |||||||||
gi|110692392|gb|EE071582.1|EE071582 C3B07870 Clusters 4 cm (VvC3) Vitis vinifera cDNA clone C3B07870, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CCTTCTTCAAGTGTTTTTCTGATTGTTCAATTCCCTCATTTATGGAAGCTAAGAAGGTGGTGAAGAAGGAGATGGAGGGCACTGAGGAGGTTGATGAGGATGATCAATTGGGCTGTTCTGAGGATGACAAGAAGAAGAAGGCCGCAGCTGGAGGCTCCGGGAAGAAGGCCGCCGCCGCGATGAGGTGCTGTCAAGCTGAGAGGTGCACTGCTGATCTCACTGATGCTAAGCAGTACCATAGGAGGCATAAGGTCTGTGAGCATCATGCCAAGGCTCAAGTGGTGGTTGTGGGCGGAATCCGGCAGCGCTTCTGTCAGCAATGCAGCAGATTCCATGAGCTCTCAGAGTTTGATGAAGCCAAAAGAAGTTGCCGCAGGCGTTTGGCAGGACACAATGAAAGGCGCAGAAAGAACTCAGCTGATCATGCAGAAGGCTCAAGCCGGAAAGGCACTCAGTTGAAGGAAATCGTTTGTGGGCAGGTTGATGATAGAGGCAGAATTCAGATTACAATCCAAGAGAATGCCGCTTACAAGCATTTCCAGATCAGATGATCAAAAGTTGTAATTGTTTTCCCACCAGCATGCTCTCTCTCTTCTGTCATTGTGAGGCACTACTGGAATAATGACAGTGGTTCTACTGTTCTACCTCATATGTATGTATTGAACAAATGTACTCAAGCATAGCATANCATATGCTAGCTGCAGCAGGANGATTGTAACATTCATTTCACAGCCTGGGGTCATATGGCTTGTTGGGGGGCAGTANGTATCTGTGAGGGATGAAATGAGTTT | |||||||||