| mature miRNA: TTGGCATTCTGTCCACCTCC species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|254917591|gb|GR903243.1|GR903243 110N_F10_012 ovule cDNA library of a seedless grape (Vitis vinifera var.Thomson seedless) Vi TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): GGGAGTCTGTTTCCCTGATATCACCATAGGAACTTCTTTGTATGCAACCCTCTCACTCAGTCTTTCAAAGAGTTGCCAGCAAGATCGGTTAGGGTCTGGTCCCGAGTAGCTGTGGGAATGACACTGAACGGGAATTCAACCACTGCAGGGTATAAGATCCTGTGGGTGGGCTGTGATGGTGAGTATGAAGTTTATGACTCAGTGAAGAACTCATGGGCCCGTCCAGGAAGCATGCCCTTACATGTCAAGCTACCGCTGTCGCTAAACTTCCTGTCACAGGCCGTGTCCATTGATGGCACAATTTACTTAATGCGTTCAGACCCAGATGGAATCGTGTCATATGATATGGTTACTGGGGCCTGGAAGCAGTTCATAATCCCTGCCCCGCTTCATCTGACTGACCACACACTCGCCGAGTGTGGAGGCCGTATCATGCTTGTGGGGTTGCTGACAAAGAATGCCGCCACATGCGTATGCATATGGGAGCTACAAAAGATGATGCTCTTGTGGAAGGAGGTTGACAGAATGCCAAAACATATGGTGCTTGGAGTTTTACGGAAACCACGTTCAGATGACTTGGCTTGGGCAACAAAGGATTGCTCATGCTGTCTCTAAGATCACGACAAATGAACCCGTTGGTTACTTACAATGTGTTGAGCAGGGAATGGCTAAAAGTTCCTGGAATGTTGGTGCCCCCCGTGGATAAAAAAAAACGGCAATGGAATTCACCTGCGGCACCGGGATTTTCACCCATGCCAAAAATGCTTCCAACCTAATTTCTAACCTCCCCCTTTTGTGGTTTCCCGGGAGGCTCTCGCCCCCCCAAAAAGAAAAAGGGGGCTCTTTTTTTTTTTTTTTTTTTCCCCCATATGGGGAACCCCCCGGGGTTTTATATACCCATTTTGGGGGGGGGCCGGACCACATTCTTATTTCCCACCCACACAAACACAACCTCCATTTTTGAGAACCTCCATATTTCTTTTCTCCTTTAGTGGTTCGCGAAAAGAAAAAAATATGAAACTAATAAGGAAAAGGAAAAG | |||||||||
gi|156725597|gb|EV229708.1|EV229708 VV_PEa08c01.b1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): AAGGGAATTNCCCGCGAATCGGCATACGGCCGGGGGAGGACAACCAGCAGCAATGAATGCATTTGAATTAATTTCCACGTTAAAGGGCTCAACCTTGGGAATTTGTTTGATATAGAACCTGGATTCAAGAGAGAAACGAGGTTCACGTCAAAATGCCCTGCCAATGAGATAATTCATAAGATTGAAGAAGCTGTGAAGCCTCTTGGGTTTGATGTTCACAAGAAAAACTATAAGATGAGGCTTGAAAATATGAAAGCTGGGAGAAAGGGGAACCTTAATGTGGCTACAGAGGTATTTCAAGTGGCACCTTCTCTTCATATGGTTGAGGTTCGAAAAGCAAAGGGAGATACTCTGGAGTTCCATAAGTTCTACAAAAATCTTTCGACCTGCCTTGAGGATGTGGTTTGGAAAACTGAGGATGACATGCAAGAAACGAAATAAGAATGTCCCCCACCTTGGAGGGTGGCAGAATGTCAGTCTTCTCTCAAGCAAAGGGTGGTTCCCATTGAGGTGCACTGTGTAATTTGAACTCTTTGACATTGCAATATCATTTATGGGTGATGCTTGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTGTCGGCCGCCTCGGCCCAGTCGACTCTAGACTCGAGCAAGCTTATGCATGCGGCCGCAATTCGAGCTCACTTGGCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAACCCTGAATGGCCAATGGAAAATTGTAAGCGTTAAATATTTTTGTTAAAATTCGCCGTAAAATTTTTTGTAAAATCACCTCATTTTTTTAACCCAATAGGCCCAAAACCGGGCAAAATCCCCTTTATAAATCCAAAAGAAATAAACCCGAAGATAAGGGGTTGAAGGTGTTTTTCCCAGTTGTGGAACAAAAAGTCTCCCTTTTTTAAAAAAAGCGGGGAACCTCCCCACCTTCTAAGGGGGCCGAAAAAACCCGCTTATATCCCGGGGGGCGGAAGGGCC | |||||||||
gi|110426743|gb|EC993162.1|EC993162 WIN1147.C21_I23 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): GATCCTGTGGGTGGGCTGTGATGGTGAGTATGAAGTTTATGACTCAGTGAAGAACTCATGGGCCCGTCCAGGAAGCATGCCCTTACATGTCAAGCTACCGCTGTCGCTAAACTTCCTGTCACAGGCCGTGTCCATTGATGGCACAATTTACTTAATGCGTTCAGACCCAGATGGAATCGTGTCATATGATATGGTTACTGGGGCCTGGAAGCAGTTCATAATCCCTGCCCCACTGCATCTGACTGACCACACACTTGCCGAGTGTGGAGGCCGTATCATGCTCGTGGGGTTGCTGACAAAGAATGCCGCCACATGCGTATGCATATGGGAGCTACAGAAGATGATGCTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGAGTTTTACGGAAAGCACGTTCGGATGACTTGCTTGGGCAACAAAGGATTGCTCATGCTGTCTCTAAGATCACGACAAATGAACCGGTTGGTTACTTACAATGTGTTGAGCAGGGAATGGCTGAAGGTTCCTGGATGTGTGGTGCCCCGTGGTGGAAAGAAGCGGCAGTGGATCGCCTGCGGCACGGCATTTCACCCATGCCTAACTGCTTCAGCCTAAATTCTAGCTGCCCTTTGTGTTTCCGGCAGCATCAGCCCAGCAAAGGACAGGGTCTTTTTTTTTTTTTTTTTTTTCCCATTTGGTACTCTGGTTTTTATCCTTTGTGGGCTGCAATCTTTTCACCACTAATCTCTATTGAGTCAATTTTCTATGGTGAAAATGATAAAGGAATTAGATGGCTCTGTGGAAATTATTATTATTATTGTCTTCTTAGCCTTTAATGTACAAACATATGTACTTCA | |||||||||
gi|110729641|gb|EE105813.1|EE105813 SCB00852 Inflorescence with GA3 (VvS12) Vitis vinifera cDNA clone SCB00852, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): GTTTTAATAAACCAAACATGGGTGCTGCTGGCACAGGTAAGAAGACAACTTTCAATGATGAGTAAGGCCTTAAGGGAGGATTTTGGAGATACAGAGTGCCGCCTCCTTCTATCTTCATATAGTAATATCATTTTTGTTTGTTGACAATTTTTGTAAGATTTTGGTATTTGGTTTTAACTCTTTAAGAGGTGTTACTTTTGGCTTATTACCCCTCTGTGAAGTAGGCATTTGTTTCGGGGAATTACTGCGATACATCTTACACGTCTCTGAACAAAAGAAGTTCAGGGCCGTCGGAGGGCGAGAGGGCCCGCATGTTTCGCACAAAGCGCACCATCACCCCCGCTGCTCGCTCTCTGGAGTAGGGGGGGGGGACAGAAAGCCACCGCGCAGACCTCGACCGCACACAAGAGGAAAGTTACGACCCACGAGCGAAGTACAAAGCCCGAGCAACACACAAGAAGATGATGAAAAATTAAAAATTTTAAATACCAGCATGCAGATGCTAAGTCATAGATACCGACGCACATCGGCAAGAGGGCGGGCGGACATATGAAATGGGAAAGCAGAGCTACACCACAGAACTAATCTAACAAACAAAACACACGCGTGGGACGCCAGACACTGAAACAATAGCAAGGACAGCGACGCGGCCAAGATGCAGCGGGGGCGAGGAAACGTCGTAGAAAGA | |||||||||
gi|156730028|gb|EV234141.1|EV234141 VV_PEb12d02.b1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): GGGGGNNNNNNCCAGGATCGCTAGGCGGGGAACAGAATGCCGATCGGGGACTAAGAACTTATTCGTCATGACCACATGATCTGATGAACTTCTCGAGGGTCAAGAGGCCAAAACCTGGGCGGGCTGCAGGCTTTCGCTTTAGCAAGCTTATTGATAAGCCTGAACAAACCCCGAAATGACGAGGATCCAAATTCTTGCCTGGCAATGAAATCTCAGATCTTTAATACTATTACCCAGACCAGCCAAGCACAGATTGAAGAACTTGACACTGATACTGAGCAGACAGCTAAAGATGATTTGGCACCAATGCATGAATCAGATTATACTCTGCCAAAATTCTTAGGAACCCCTGACATTGATCAAGAATCCGTGAACAACATCGATGTGCATTTCTCATCCACTGTGCAGATTGAAGATTCATGATTTCAGTGCTTGGATCTTTCAGGCTGTGGTTAAGACAAGTTTTGATTAGTTTATGGGGAAGATGAAAATTATCTGACCTGTAGTGTTATCCAGTGATATAGTGGGCTTATATTTCTGTGTGGTATCATGCCCCAGCTACCTATAAGAAGATTGTAGAAACTTAAAATTCCTACTGAGATCGTGAAAAACGAATGCTTTGCAAAAAAGCATGTCGGCCGCCTCGGCCCAGTCGACTCTAAACTCGAGCAAGCTTATCCATGCGGCCGCAATTCAAGCTCACTTGGCCAATTCGCCCTATAGTGAGTCGTATTACCATTCACTGGCCGTCGTTTTCAACGTCGTGACGGGGAAAACCCTGGCGTTACCCAACTAAGTCGACTTGCAGCACATCCCCTTTTTGCCCGATGGCGAAAAAACGAAGAGGCCCGCACCGTTGCCCCTTCCCACGTTTGGTCGCCTTGAAAGGCAACGGAAATTGAAACCGTAAAAATTTTGGAAAACTCCCGTTAAATTTTTCGTAAATGAGTCCCTTTTCAACCCAAGGGCCGAAATCTGCAAAACCCCTTATGGCCCAACGATTGCCCCCCTTGGGGTGCAAGGTTTGTCCCATTTGAAAATAGAGCCCAATATTTAAAAAACGCGGACC | |||||||||
gi|156739193|gb|EV243314.1|EV243314 VV_PEd20f02.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): CCAGAGACCACGCGGTGGCGGCCGCTCTGAACTAGTGGATCCCCCGGGCTGCAGGATTCGGCACGATGTAAAGATTCAGAAGAACATCATGTTACAGAGAAAACGGAGGAACAACCAGCAGCAATGAATGCATTTGAATTAATTTCCATGTCAAGAGGGCTCAACCTTGGGAATTTGTTTGATATAGAACAGGGATTCAAGAGAGAAACGAGGTTCACGTCAAAATGCCCTGCCAATGAGATAATTCATAAGATTGAAGAAGCTGTGAAGCCTCTTGGGTTTGATGTTCACAAGAAAAACTATAAGATGAGGCTTGAAAATATGAAAGCTGGGAGAAAAGGGAACCTTAATGTGGCTACAGAGGTATTTCAAGTGGCACCTTCTCTTCATATGGTTGAGGTTCGAAAAGCAAAGGGAGATACTCTGGAGTTCCATAAGTTCTACAAAAATCTTTCGACCTGCCTTGAGGATGTGGTTTGGAAAACTGAGGATGACATGCAAGAAACGAAATAAGAATGTCCCCCACCTTGGAGGGTGGCAGAATGTCAGTCTTCTCTCAAGGTACCTGGCTAATGTTCTAGTGTTGTCATTATGAAACCATTCTTTTGTTTATGAAACCATTTTGGCCTTTTTCTTTTTTTGGGTTTTTTTGGGTTTTTTTTGTGTAGAATTTTGAGACACGTGGCTTCACTAATTGTTTTCCTGTGTTATTATGTTTGGAAAGCAAAGGGTGGTTCCCATTGAGGTGCACTGTGTAATTTGAACTCTTTGACATTGCAATATCATTTATGGATGATGCTTGATGAANGGGAAAAGAAAAAGAAGATATATACCCATACCCATTTGTATATTTACTTTTNTGGTCCCTTTTGTCCTCCTATATTATTTTGCTCACTTTTGAGCTGATGATATTTAATATAATTTTTTGGTTGCTAAGGGGGGGCCCGGTACCCANTCGCCCTATAGTGAGTCGTATTACAATCACTGGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGNCGTTC | |||||||||
gi|110397352|gb|EC963083.1|EC963083 WIN0816.C21_E17 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0816_E17 3', m TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): GGTTCAGAGTATGAGAAGGGAGCTATTTGCCATCGCCTGGTTCTTGTCTGTGGGACTTCTACTTGCCATATGGCTGTATCTCGCAGCAAACTGTTCATTCCAGGGGTCTGGGGTCCATTTTGGTCAGCCATGGTACCTGAATACTGGCTCACAGAAGGTGGACAGAGTGCTACCGGTGCATTACTGGATTATATAATTGAAAACCACGTTGCATCTCCTCGCCTTGCAAATCGCGCTGCTTCTCAAAATATTTCAGTCTTTGAACTACTGAACAAGATACTGGAATCGATGATGCAAGACCTGAAATCTCCTTTTCTTGCTGCTTTGACTGAAGATATACATGTGCTTCCTGACTTCCATGGAAACAGGTCTCCTATTGCAGACCCAAAAGCAAAAGGGGTTGTATGTGGCTTAACACTTGACACAAGCGAGAAGCAGCTGGCTCTTCTATATCTTGCTACAGTACAGAGTATCGCATATGGTACCCGACACATTGTGGATCATTGCAATGCCCATGGTCACCAAATTGACACACTACTTGCATGTGGTGGACTTGCAAGAACCCCTTGTTCCTTCAAGAGCATGCAGATATAGTTGGTTGCCCCATAGTCTT | |||||||||