| mature miRNA: TTTGGATTGAAGGGAGCTCTA species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83274622|gb|DV938719.1|DV938719 CSECS182F04_INFu0031 CabSau Immature Inflorescence Stage 31 (INFu0031) Vitis vinifera cDNA cl TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): ACAAACACAGTCAGTAACGCAAGCCACAAAAGAAAACGGAGATAATATTGATGTGGTTAGAAATCGGAGAATCAGAAAAGGAAAAAAAGTTATATATGTTTGGAAAATTTAACATTTATCATGAAGAAAGATGAATCAAAAGCTAAAAATAAAATAAAATGGAAAGTGATGATGACGATGATGAACAGAGAGAGAGGTGTANAGCTCCCTTCGATCCAAACAAGGATCTAAACTTGGATAATG | |||||||||
gi|110400574|gb|EC967140.1|EC967140 WIN0824.C21_A07 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0824_A07 3', m TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): AGGAACAGCCAGCCTTACATCCCAAAGCTCGAGCCTTTCAGCCGAAGCAAACTCGATCGAGTCCTCAAAGAGCCTCCTTTGATCCAAAAGTGCGAAAACGAGCTCATGGGTACATCAAAATCTCTCCCTTTTCTGTGTTGTATTGCTGTAACGTTGACAGTTTTGTTAGATTTCCACTTCAAATAAAATAATGTTTTGTGTGTGGTGTTTTGATATGTTGTTCTTTTTCTGTGATTTTCTTTCTTAATTTGTAAGATTTTTTGTTGCTGATTTGATACTGAAATCTGGTGTTTTTCAGATTATTGTTCGACGCTCGAAGGAGATGACTCGTATAGCTGTTGGCAGGCATATTTCGAGCTCAAAGATTTAGAAAAAGAGTCCCCAAAGGAAGATGTAGAGAAGCTGATTCTTCAAGTGGGGGGCTTGAAGTCTCTGATTGGATGCCTACACCATGTTGCAACCTTCAGTAAAGGGAAGAAGGCCGGGATTGGATCAGTAAAGGCAGTGAATACAGAGAAGAAAGAAGGAGAAAGACCGTTTCCCGTCCCGGATGGACTGCCAAAATCACAAGAAGAGCTTGAAGAAGAGGACAAAGGTAGAATGCCAGATTCGGCTTTCACCAGGCTTCTGAGAACAAAGGGGAGGTTCCCTGCATGGTATTCTCCTGCCCCTGACCACGAAACCGATTGATAGTGAGAGGTTGTGCCGAGTTAACCGAGTTAGCTGAGTTGCTTTGTGAATATTTTTGGATTCTGCAAAGTGTGATTTTTGATAGATCTTAGTGGGTCTGGACTTGTGGGTAAGTGTAATGAGGGGAGATCCGGGATAACTATTTTAAAAACTTGTGTTGTAGCTTCTACAAATTCTGTAATATATGATCAGTTAAAGAGGAAAAAAAAAAAAAAA | |||||||||
gi|110694135|gb|EE070974.1|EE070974 C3B05243 Clusters 4 cm (VvC3) Vitis vinifera cDNA clone C3B05243, mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CTTTTCGATCCCACCCCTTTTCCTTCTGAGAACATGTCTGGCTGTGGTTGTGGCTCTAGCTGTGGCTGCGGCAGCGACTGCAAATGTGGCAAGATGTACCCTGACCTGGGTTCCTCGGAGAAAGCCACCACCGCTGCCACCATCATCACCGGGGTCGCACCAGTGAAGATGCACTCTGAGGGATCGGAGATGAGCCTGGAAGGAGGGAAAGGCTGCAAGTCTGGGAATGCCTGCAAGTGCGGAAGTAGCTGCAACTGCGATCCATGCAACTGCTAGAGGCGAATAAGCAAGAAGATGGGAACAGTACCTCAAGTATCTATGGTCTATATAAATAAGGGAAAGAAGAAGAAAAATGGAAGTGGATTCCTGGTTGTGTGACTGTTATTAGTTGTTGTGGCTGTAAGGTCTGTAAAAATAAGGCAGCCATGGGGGCTTGCAAAGCTTTCATGGCTACCACCTANGTGACTTCGTTATATTTTAATGTGCTTGTTAATGTGATGCATGTATGATGTGTGAAAAGAAGGTTTGAATTATATTTTAAATGAATAGCTCCTTTCAGTCCAAAAAAAAAATAATCCAAAAAATAAAATCATCTTAACAAAATAAGAAAGAATTTAGATTGAATATACCCCTCTTTCTTGGTGCAAAGTGTCATTTTATAAAAAAATCTTTGTTTTCTATTTTTTTTCGCTAGAAAAATGAAACTTTACCTCCGAAAAAAACCCATCTTTTGCCATTCACCTACAAT | |||||||||
gi|156723667|gb|EV228459.1|EV228459 VV_PEa03a01.g2 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CCAGCAAGCCGGNNCACGTCGGCGCGGTGTCTGATAGCNNNGCTTGCTCGAGTCTAGAGTCGACTGGGCCGAGGCGGCCGTTATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACGGGCGATTGATGGCCTTTGATTTAAGTTGATAAAATTTGATCCTTATCACAGTTTCTGTAAAAACCTAACTAAATTTCTCATGATCTTCAAACAAGTACAAAATCTCATTAATACAAAAAAAATGTAATCTAGTTCTCCAAATCAGTGATCCTCATGAACCCACCGCTTGAAGTGAAATGGGCACAGGGAATGACCTTCAATCTGTCAGCTCCTGCATATGGAGCAAATGAGAAGTTATAGAGAAAGAAATGGTTCAGTTAAATGGTACTGGAAAAATATTGACCTTGTGTTAGTTCCAGAAATGGGGAGAGATAACATAGAAGAAACAAATACCGTCAGTAATGCAAGCCACAAAAGAAAATGGAGATATAATATGATGAGGGTAGAAATCCGAAAATCAAAAAGGAAAATAAGTTTTATCTGTTTGGAAAATTTAGCATTTATCATGAAAAAAGATGAATCAAAAGCTAAAAATAAAAGAAAATGAAAAGTGATGATGATGATGATGGACACAAAGAGAGGTGTAAAGCTCCCTTCAATCCAAACAAGGATCTAAACTTGGATAATGCAGCTCCTGAGATATGCAAGCCACAAGCCTATCCAATGCCCCCCATTGACGGGATAGGGCTGTGGGATCCATAAGCTCCGCACCTCAATCTACCCAGTAAGACCCTCTATTGGACTTCAAGGGACCTCCCACTCCAAAAACCCTAATTTTCATCCCAGAAAAACCCTTTAACCCCCCGGGCCGGAAATGGCCCCAAATTTCCCCGGGGACCCACCACAAATGGCCCCCCCTTTCCCGAAAAAAAAAAAAAAAAAAAGCTCTCTTCCCAAAACTCTCGGAGACTTGGGGCCTATAATCACTGGGGCACCATAACTGGGCTTTTCCCCGGGGGGGGGAAAAATATTTTTTGTTCCCCCCCCTCCCAACAAATTTGGCCTATAAAAGAATACCTTT | |||||||||
gi|110428514|gb|EC994988.1|EC994988 WIN1151.C21_P02 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clo TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GTTTTTTTCAAGTCTTTTTCATAATCATCAAACTTAACATCTGATCATGAGATGGGTTAAAATACAATATTCCTAACAAACAGCCTGTACTGAAAGGAAGAACGCGGTTACACTAAGAGCCGAGAAACCGATCACTCGAGCAAACACTAACGTTATCTGGTTTAACAATATCATTCATCTCCTAGCTAGATTCCCATATTCTAATCTCAACAAGCTTAATTTCTGAAAGCAAACATAATCGTGGGCCATGCAGGCATGCAAAAAAAATGGAAAAAAAATCACTGTTTCTCATAAGATATTCCATGTTTTCAACAAATTAAGCAACAGAAATTTGGAACTTACCCCTTAGATATATCCAATCCTCCAAGATAGCAAACACTCTCTAGGCATATATATATATATATATATACGTATATTGGTTAATAGTTTCCAGCCTTGAAAGCCATTAGAGAAGGAAAAGAGAAGAACTAGGAGCTCCCTTCAGTCCAAAACAAGGAGCATGAAGTTCATCATCTTCTTCAGCGATGGAGTTGTTTTGGGCTGCAAAGGAACCCCCATTTCTGCAGTTTTCTTGACAATTAAGCTCATGGAAAAAAGGAGAAAGATAGTGAGAGGAGAACA | |||||||||
gi|156730975|gb|EV235096.1|EV235096 VV_PEb18b11.b1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TATGTTTNNNNCCAGGGAATGGCATTCGGCCGGGAGAGAGCTTTGTTCAGTCCAAACATCTTGGATCAGAACACGTTTCTCATCAATGAGATTAACCAAAATCATGAGTCCAAGATCCCTGACAACCTTAGCAGAAATGTGGGTCTGATTAGGGAGCTCAACAATAATATCAGAAGGGTTGTTGACCTCTATGCTGATCTTTCAACTTCCTTCACCAAATCCGTGGATGGTTCCTCTGAGGGAGATTCTAGTGGTGCTTTGAGATCAGATGGGAAGGCTGGCCATAAAAGAAATAGGCCTGTGTAGCTGCTGCTCCAACTCAGCAAATTCTAAGACTTCTTAATTCTTTTTCATGGTGGGAAAACGGAAAAACTCAGAAAGAAAGAAAAGAAAGAAAGAAAATTTGCATTTGTGTTGAGCTAGAACCACATGATTAGGTCCTGTAACTCTTTTGTATTAGTGAACTGTGTTTAGTTCTTCACTTACCTTACCACCCCCTCCCCCACATTTCTCAGAAACAAAATAATTCTCTCAAATCTCTCCCCCATTGTAACTGTGTAACTGTGGATCTAATTGAAATCGGTCTTGTTTGTTTCAATCCAGTCTCTTGATTTTTCGTNNAANAAAAAAAAAAAAAAAAAAAAAAAAAACATGTCGGCCGCCTCGGCCCAGTCGACTCTAGACTCGAGCAAGCTTATGCATGCGGCCGCAATTCGAGCTCACTTGGCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCAAAAAGGCCCGCACCGATCGCCCTTTCCAACAGTTGCGCAGCCTGAATGGCAAATGAAATTTGTAAGCTTTAATATTTTGTTAAAATTCCCGTTAAAATTTTGTTAAATCCACCCCATTTTTTAACCCAAAAGCCCAAAATCGGCAAAATCCCTTAAAAATCAAAAAAATTGACCCCAGATAAGGTTTAATTGTTTGTTCCCGTTTGGAAAAAGAACCCACCTTTTAAAGAAACGTGAACTCCAACCGTCAAAGGGCCAAAAAACCCCTTTT | |||||||||
gi|161714196|gb|FC062941.1|FC062941 sT7aVVM005I21087 VVM Vitis vinifera cDNA clone VVM005I21087 5' similar to emb_CAO47726.1 unn TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): AAATTTGCGTTCTGCGATTTATACAATGATAAAATCATTCGCTCTTTCGTCTCCTTCTCTGATTTTTTATGTAAGTGATTCAAGATCCTCTACAGTTTGCTGTTCTTCAAGGAACAGCCAGCCTTACATCCCAAAGCTCGAGCCTTTCAGCCGAAGCAAACTCGATCGAGTCCTCAAAGAGCCTCCTTTGATCCAAAAGTGCGAAAACGAGCTCATGGATTATTGTTCGACGCTCGAAGGAGATGACTCGTATAGCTGTTGGCAGGCATATTTCGAGCTCAAAGATTTAGAAAAAGAGTCCCCAAAGGAAGATGTAGAGAAGCTGATTCTTCAAGTGGGGGGCTTGAAGTCTCTGATTGGATGCCTACACCATGTTGCAACCTTCAGTAAAGGGAAAAAGGCCGGGATTGGATCAGTAAAGGCAGTGAATACAGAGAAGGAAGAAGGAGAAAGACCGTTTCCCGTCCCGGATGGACTGCCAAAATCACAAGAAGAGCTTGAAGAAGAGGACAAAGGTAGAATGCCAGATTCGGCTTTCACCAGGCTTCTGAGAACAAAGGGGAGGTTCCCTGCATGGTATTCTCCTGCCCCTGACCACGAAACCGATTGATAGTTATGGAAAGTCATAGTGAGAGGTTGTGCCGAGTTACTGAGTAGCTGAGTTGCTTGTGATATTTTTGATCTGCAAGTGTGATTTT | |||||||||