| mature miRNA: TGCAATTGTTGCCTCAAGCT species: Zingiber officinale database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|87103019|gb|DY369803.1|DY369803 ZO__Ef0002A08.f ZO__Ef Zingiber officinale cDNA clone ZO__Ef0002A08 5', mRNA sequence TGCAATTGTTGCCTCAAGCT EST sequence (targeted fragment marked with yellow): CCTTGAGGCAACAATGGCGGCTGGTGGAACCAAGAGGTGGATTCAACAGCCCAAGAGAGGATGAAATGGGTTCAACAGAATTATATGATCTACAACTACTGCAGTGACCTCAAGAGGTTCCCTCAGGGCCTGCCTCCAGAGTGTTCCATTGCCTGAGAGAAAAGAGAGGACAACCGCTGTGAATGTGATTCTTTGATTTATTTTAAATTTTTTGTAGCACGAGAGCAGATAATTGTTGTTTTGTTTATTGTCAAATAAAATATGGTTCTACCTCGTGCCGAATTCGGCACGAGGGTGATCAACGGCCTCACAGCGAATGTGCGAAAGATGTTCGAAGACATGGACGGCAATCTCTTTGCACAGTGCCAAGAGAAGTACATTGAGGAAGAAGCAAAGGCCAACGCCTTGAAAGAGCAACGAGAGCTTGCATGGAGACAACTAGAAGCTAAAGCTAATGCTGCGGGAGAGAAGATGATTCTAGTCAATTAACTTTAACTGGCAGCCTAAATTTGTGCATACTATTCTTTTGGCGTCCCTATTTATTACCTCTCAATCTTCCAAACCTTTCTTCAATCATATCTTATTGTGAATATATCTGGGTTCTGGATTGTTTTGGAGATTCCATTGATGTCTAAATAGAGACTTTGTTTTCTTTCTGGCATTTTAGTTGTATTTTCAGTATCGGGGACTCTGATTGTCATGTCACTGGTACCTTCTGATAATAATTAACTTTTGTTTTAGCAGTCACTTTTAA | |||||||||
gi|87074975|gb|DY345292.1|DY345292 ZO__Ea0001O09.r ZO__Ea Zingiber officinale cDNA clone ZO__Ea0001O09 3', mRNA sequence TGCAATTGTTGCCTCAAGCT EST sequence (targeted fragment marked with yellow): CGGCAGAAGCTTCGCAACCGTCGACCGCCCAGAGGTCTGCGTCGTTCCCCACCATGCCCGACATCATCGCCGCCTCCCGGGCGCAGGGCCTCCGCCTCCGTCTCCAGGTCCTCGGGCCCTTCTTCCGGGTCCGGGCGGAGGGCGAGGACGGGTCCGAGCTGGGGAGGGCGGAGGGCGTCGTACGCCCGTGGGTCGCAGGAAAGGTTCTGCACCTCGACTCCATGAGGCTCAGCCGGGACACCCTCTCCATGGATCGCTCCATCTTCGGCCTCGGCCTCTTCGTCGGTGCCGCCGCCGTCCGCCACGGCTACGACCAGGGCTGCCGCACCGCCCAACTCCTCGCCATCAACGATTCGCCCCTCTTCCACTCCAAGCTTGTGAGATTCTACACGAGGATGGGATTCAAGGTGGTTCATGAAGTGGATGGATCGTCCATGGGGGATTTGGCTCACATGCTGGTGTGGGGAGGGAGAGGAACTCGAATGGATGCCGACATCGAGCAACTTTTTCTCAAATGGGCCAAAAAATTCAAGGCTTCAAGGTCGTAAGGCAACAATTGCACGGATCTGAAACTTCAACTAGAAATAGGCAAAAACAATCTTTAATCTGTTCTACCGATTGTTGCGATTGCTTTCAAAAGGCAGACAAAACTGGTGACTGCAAAATCCGAAGATTCATTCGATAAGCAAAACAGAGTTGAAGCTAAAACAAGGAGTGATCGATGAACTTCAAGTTCAAACTTGTTTTTATATGTTCCTAAGTTTTCTATGTGGAATGTAATGAATTCCCTTATTTTGGCAATTTCCCAAGGGCGTACTCACTGTTAACTAAAAATATGGTACAT | |||||||||
gi|87091579|gb|DY358366.1|DY358366 ZO__Ed0002P22.r ZO__Ed Zingiber officinale cDNA clone ZO__Ed0002P22 3', mRNA sequence TGCAATTGTTGCCTCAAGCT EST sequence (targeted fragment marked with yellow): CCAGGTACGTTGTAGTCCAGCATCTTCTCGATCCATTCGCGGGACTCGTCGGTGTAGTCAAAGGCGGGATCCCGCAGCAGATCCTCCTTAAGTTGAACATAGATCTGGAGGAAGGCCGCCTTCCGATCCCCACCCGCTGCGACCGCTGCCGCTCCGTTCGCCGTCGGCCTGGAATGGTGCTCGTTACCATCACCTAGATGTTCAACAGCTTAAGGCAGATCTTTGGGTTGCAATGATGGATGGTGATCGAGTACCTTCAGGCGATGCTGTTCGCAGGCTTGTCGTAGGATACACAGCATTCGGCACTGCTCTTGCACTGGTTGTGCTGATAGGGTTGATCCTAAGTGTGATCAGATGTGTTTTGCCGTTCAACCGATGTCTTCCTCTCTTAAGGAAGCAAAGAAGCAACTTTACTGGAGTGCAACGACATGAGCAGCTTCAAGTCTATGCTAAGCTCAGAAGTTTGCTTGGCCAAATGAACAGAATTGCTCATACTCTTAAAGAAAGAGTTAGAGCCAACAATTGTGCTGGCCGGATCGTTGTAGTTATCATCCTTCTTGCTGCGGTTGCGTTAACTTGTATCGGCACACATTACGTTTATGGAGGAAATGGTGTTGATGAGGCTTACTCAGTGAAGGGACACTACTCTCAGTTCACCCTTATTACAATGACCTATGATGCCCGCCTGTGGAATCTGAAGATGTACATCAAGCATTACTCTAGATGCACCTCAGTGGGAGAAATCTTGGTGGTATGGAACAAAGGCCAACCTCCAAATGTTAGTGAATTCGACTCTGCGGTGCCCGTCAAGATTCGAGTGGAGAGGAGAAACTCTTTGAGCAACAGGTTTAACATAGACCCTTCAATAAAGA | |||||||||
gi|87090487|gb|DY357274.1|DY357274 ZO__Ed0001H06.r ZO__Ed Zingiber officinale cDNA clone ZO__Ed0001H06 3', mRNA sequence TGCAATTGTTGCCTCAAGCT EST sequence (targeted fragment marked with yellow): GCATTTCAAGCAATTGTTTTTATGCCTACTAATTTGAAATTTTAGATGATTATTTCCCCCGTTTTTCTACATTTTTTGTTTATGTGAATGGCAAATTTGAATCCATAAGATAAAGATGTAATTCACCATTTGAATGTTTATTTTCTGAGATATTTACAAAGGCATTTTTTTTTTTTCAAATCACAAGACTCATTTTGATTTTTTATCAAAAAGATTACTCATCCTATTATTTAATTGTATATAATTACTCAATTATCCTCTAGTAGTCCTATTATCTCCCACTTAATTTCTAAATTGATTGGACGTATTATAACAACTACATAACTACTATAACGTGAACAAAAATGATAGAAATTTACATTGTGCAACTACAAAACCGTAACTGCTACAATATAAATAAGAATGATAAGAATTTATGTTGTAGCAATTACGATTTCGTAACTACTACAACATGAACATAAATTCACATAGCAGTTACAAAATCGTAACTGTTACAACGCACCCGATCGATTCATTTGAACAAGAGATAAATACAGAACAATATTAGAGAATAATTGAATAATTATATATAATTAAAAAGTAAAGTAGAACGTACTTTCAATAAAAAACTAAAGTGGAATGCCCCTGGATGGTTTTTAAAAAAAAGAAGAGATATCCTACTGACTTTTGCTCAAAATTTCAAGAACCCTAAAAATTTATACTCACAGTTTTAGCAAAGGGAGGCAACGAGCTTGAGGCAACAATTGCAAGAAACTAAGGCAGCGCACATAACAAGTTATGCAATTGCTGCCTTATACGTGCTGCCTTCTTTTGCATTAACTGAAATCTCA | |||||||||