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mature miRNA: GGCCGGGGGACGGACTGGGAA
species: Zinnia violacea
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|219988436|gb|FM881001.1|FM881001 FM881001 SSHSTS0 Zinnia violacea cDNA clone SSHSTS05xxxF06F3, mRNA sequence

GGCCGGGGGACGGACTGGGAA
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CCGGCCCCCTGCCTGACCCTT

EST sequence (targeted fragment marked with yellow):
GTTTGCTATCGGTCTCACGCCAGTATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGCAGACAGCGCCTCGTGGTGCGACAGGGTCCGGACACGACGGGGCTCTCACCCTCTCTGGCGCCCCCTTCCAGGGGACTTGGGCCCGGTCCGCCGCTGAGGACGCTTCTCCAGACTACAATTCGGACGACGCCCGGGGAAGGCCCCCGAAGAAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGTGACCCGCTCTCGCCGCGGACCCGCGT