miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001426
Located between position 27987016 and 27987125 on chromosome 1 strand +
mature miRNAs for MI0001426:
         ath-miR415 (MIMAT0001323): AACAGAGCAGAAACAGAACAT

References
[1]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
[2]Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"




>promoter (3kb upstream pre-miRNA, by PMRD):
TGAAAGATATCAAATATTTGATAAGACTCAAACTTTATGAAACCCATGTCTAAAAAGGTGAGACTTTTTTTGTAAGTTAA
TTTATAAAAGTCCCACCATTAACTTAGCTCAGGTTAGGTCATCCACTGAAACACTAAAAGGTTTTGCTCTGCTTTTTCCC
CTTATTACACTGTTTTAAATATGCCATTTTTGTTAATTTATCTTTTTCCACATTAATAATTGTTATTTTTCGTTTTATTT
GGTGGAGAGACACTGAGACAGTGGAGGACACAACAACCTCAATCAAACATGATAATATCTTTACTATTATAAGACAAATT
CTCGAATTAACAGATACAACAAAAGAAGAACAATTACAGAAAATCAAACATTATTTGACATGATCAAAATGAAAGACAAA
CGAAACTCTCCACAACATGATCACAATTTACAGAAACCGGAAGTATTATATATAATTAAGACTGTAATTCCGATCAGTTA
TTGTCGGAAGAAGGAGAAATATCCGGCGCGGGAGATGGAGCATGGGAGATACCGTCATCGGCACGCATGAAGTCAAATCT
TTTGATGAGTATATTAGCGACGAGTTCGTTAGCCTTATCGGTGGGATGATACTCATCCCAAAACACATACTTACTTCTGT
CTTTACACAATGTCGACGCTGGAATACACGTTAGCGCAGGCCGGATTCTGTAGAACGAGCAACACGGCGAATCCGAGTTA
TCAAACCCTATAATCACACAAACATTTAAACAAGTTAATCCAATGATCAAAGCGATATAATTAAAAATGCCTTTATTAAC
AAAAACTATCCAGCTTAATTTATGTGAGGAAAATGAAACTTCTGATTGTTTAAAAAAAAAAAAAAGATGCCGTTTGTGAA
TGCTTCTTTTGATTTTATCAAAGTTTTATATTACCGTATTTTTTTGGGTTAGTGATGACGTCGTTGACGAGGTCATAGGC
TTCACCAAACCTGTAGCTTGCGTTAGGGAGCTTGGTCTCGAGATCTAGGAGCATTGTGGTGGCAGCTTTGTTGAATCTCT
TAGCAAGATTACTCGCTTTGTTTTGACAATTTCCATCCAGGCTTAGAGCTCTTTGCAGTGGGATACAACCCATTGGTCCT
AAACCAAACACCATTAGCTTCCTCGCTCCTAAACTATGTAACACCTAAAACATTACATGCATCACAAATTTGTATCAGTT
AGATCATTATATATATGAAAGATAAATAGGTACTTGAAGTGTTGAATTAGTTTAGAAAATAAACCTTGAGTTGAGATTCA
AGTGTTTCCATTAAGTAGTCGACGAAGGTTTGATCATTGTATTTCCAAGAGTCGCTATAGACAGGCATCAAATAGTTGTT
AATGAAGTCATTGCTGCCTAAAGCGACGACGTATCGAGCATCTTGAAAGAACTTGTCTGCTTCTTTTTTCCCTATCTTTG
CCACAACTACATCTTGTGTCCCTTGGAATAATTCTATTTGCTTCCACAGCGAAAATCTTTGGATCTTCACAAATACAATC
CCCATGAAAAAGAAATAAACATTTTTAGAAAATCATTATCATTTCTTTGATGAATCTTATTCATTTATTTTTATGCAAAT
AATAATGAAAACTTATTATTTCATGAGACTTACGAAATAACCACCAGTTTCGTTCAAGATTCCACCACCTCCTGAAGCAT
AGTTCACTCCATTTTCAAGTATTACATCTTCATTCATTGATGGATCCAAGAAGGCTACTGGTCTTGGCAATCCAATTTTA
TCACCTTTAAATTTCAACAAACCCATTATAAGCTTGTACTAAAACGTAATTCACATGATATATATATCATTGACTAATAA
TTAATTCCATACTCATGACTTACCTATAATGTCTGAAACAGTGCGGCCATTAGTGAACCTTCCATTAGGCAAACCATTGC
CAAAATCAATACCGTAAAAGGGCAGATTCGCCGTCGCTAAACTCCTAGGTAGATTCTTATTGTTGCCTACATCAGACAAT
GAATCTCCAAATATAAATTGGACTATCTTGCAATCGTAGCCGTTGATTGCAAGAACGATGAATAACACGAATATCGCGCA
GAACTTCATGTCGCCAAATTTGAATGTGTGTTGATTGAAAAAGATTTGTTTGGGTGGTTTTTAAAAGGGTTTTGGAGGTG
AAAAAATAAGGACTAAGTAAGAAAGGTGGAGGAGTAGTGTGAGAATAAAGTGGTGAAGGTAGATTTTGAGTTGATGAACC
AACTGATTTTGTTTTTTTCTTTTTAATTATTGTTTTTGGTTTATGTTTGATTCAAACCTACTTCAACTACTCTTTCCTCG
TGTTGGTATCGTAAGTTGTAACCGTTTCTTGTCCGTAAACTTGAAATTTTGGTAATATTAAACCTTGCCGTTTATGAGCT
CATATTATAGCGTAAAACCAAAAAAATAAACTTTACCTCAATACGGAATATTTCCTTGTAGTGAATTAAATAAATTTAGA
CCTCTATCAAACACTTGTAGTGATTTTCCTCCTGCATGTATTCTTCACTTGCTATTTCGTTACTTTGGCTTCTCTTACTA
AAAATATCTAAAATCATATGTAAATTGAAAAATACTATTCATGCCGAAACAAAATAAATTAAAGGAAATATTTTTGTTTT
CTTCTAAAATTTGCATGCTCGTTTGTAATTTGTTTTTTCTCATGAGCTCAGATTGGGTCAAATATGTTTAATTATGGGCC
AATTTCAAGCCCAATGCACCAAAGGTGGAATTGCTCGGACTGGAAGAAATTCAGGCAGATGATCGAGTGGTATACTGGTA
AATGACCACCAAAAGTACTGTTTAAGCCGTTGGACACTGAAGAGCAGTTTTTGTAGGTCAGAGGCTTTTTCTGACTGAAA
CAGAGTAACGTGTCTAAAACAGAGGTAGTTAATATTTTGATCAAAATGTGATTTGAAATCCACACTAAATCGGCCGGTTA
TACTGGTAAACCCACAATTTGAAGACTAATTCGGTCTGAT