| Basic information from miRBase |
| hairpin accession number: MI0001000 |
| Located between position 16061954 and 16062060 on chromosome 2 strand + |
| mature miRNAs for MI0001000: |
| ath-miR390a (MIMAT0000931): AAGCTCAGGAGGGATAGCGCC |
| You can find this miRNA in ASRP: miR390 (accession: ASRP754) |
| References |
| [1]Gustafson AM, Allen E, Givan S, Smith D, Carrington JC, Kasschau KD, Nucleic Acids Res. 33:D637-D640(2005)., "ASRP: the Arabidopsis Small RNA Project Database" |
| [2]Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V, Sundaresan V, Genome Res. 15:78-91(2005)., "Computational prediction of miRNAs in Arabidopsis thaliana" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [6]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
ATTGCATTTATTCTTCTATGGAAGTTGAATGAGAATGTAGTTTTGCTCTCTCCTCAAATCAAAGTGGGAAGAGCCAACCA
GTACCTCAAATCAGGTAATTCCTTAAAATTTTCAAGTTTTCTTTAAACGATTCAGAAAGGCTACTATATGAAATGTATTG
ATTCATGCTTAGGTGGGCTTCTCATTGGTAGAACGGTGGCTTTGCTTGTGCCATTCACATTAGCTACTTCGTTAGCAGCT
CAAAATGGACCCACTCAAATGGCTGGCCATCAAATCGTCTTGGAAATCTGGTTGGCTGTCTCTTTACTCACCGATGCTTT
AGCCATTGCTGCACAGGTCTAATATCTTTTGCAAATCATCTTCGAAACAGACAATCTCTACCAAGATTTACTGTGATATA
AGAATCCCATTAGCATGATCCAAGATTACCTTTTGGGGAGAAGATTTTCACTTATATTTTCTACCTCTATTTTCAGAGTC
TTCTTGCCACCACTTACTCTCAAGGAGAATACAAACAAGCCCGGGAAGTTCTCTTCGGAGTCCTTCAAGTTCGTATTCAT
AATTCATTACATCCCTAGTTTATATCCTACCCTATATATTCGATGTTATAATGTACAATTGCAATCTTTTAAGTAGGTAG
GTTTAGCAACTGGAACTGGTTTGGCTGCTGTATTGTTCATCACTTTCGAACCATTTTCAAGCTTATTCACAACGGATTCA
GAAGTTTTAAAGATTGCTTTGTCAGGGACCTTAGTAAGATCTTATCTTTTAATCCAGAAAGAGTTTGAAAAGGGTAGTCT
CAGACAATATCTAAATAATGTTGGCTGGATGCAGTTTGTGGCTGGATCTCAACCGGTGAATGCTCTAGCGTTTGTTTTGG
ATGGGCTCTATTATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATGGTCCCTTTTCCTTCTTCATCAATTGGTCGT
TTGATTCTCCCTTTTCTTCACCTGGAAAAAGTTGATTATTTCTCATTTTGGAACAGGTGATTGTCGGATTCATATCTTCC
TTGTTCATGCTTGTGGCTGCACCAACGTTTGGCCTTGCCGGGATCTGGACTGGTTTGTTCCTCTTCATGGCGTTGCGGTT
GGTTGCTGGAGCCTGGAGGTAAACAATTAATTAAAAAGACCGTTCTAGTTTCAAGTTTTCAACCCATCCGAAATTTTTCT
TAAAAGGATACTGCGTCATGTTTCAGATTGGGGACAAGAACCGGTCCATGGAAAATGCTATGGTCTGCTCCAGAGAAGCC
AGAATGAAGCGGATCACTGTTTTTTGCGGTATGATGCGTGACTCTTAAGTTAAGATAAATGAAAATGGAGTAAACTAACA
ATGTAAAAAACATAGTCTCATAGTCATAGTATATTGATGCAGCATAAATCCTAAGCTAGAATCTGAAATACTCAAAATAT
GAATCGAATCCACCTCCCTGGTGATAACTGGAGCTTTGAGGTTCATTATACAACAATCCGTTATCCAATTTGAATCGATC
ATAGCTGTAACCTTCCTCTGATTTCACTGCTGGGTTCACTATTTCATTATCAGTCATAGGATTCTGAGTCTTGTCATGGC
CAAGCTCAATAGCGTCTTCATTGTAGACTACATAGTCTTTTCCACCTTCCGTTTCAATCACGCCATTACCGGCTTTGTTA
GTTTCCAACCAATAGCCTCCCGAACTTTCCGCCTCCTCGTCCTTCTTCCTTCCCCCACCCAAATCTTCCGGGAAATTTAA
CCTGGCATAGGGTCCGTACATGACACTAGCAGCTCTGTCGTAAGCCAAAGCAGCTTCAGCTGCAGTAGCAAACGTGCCAA
GCCAAAGCCGTTTACTACGACTAGAGTTTGCACCACGGTGACTCACTGGTTCACGTATCTCAGCAACCCATTTCCCCCAA
ACCCTTTGTCGAACACCTCTAAACCGACAAACAGGATTCTCTGGTCCACCTTTTCCTCTCATACAACCTTTCTTCGAACC
TTTGGCTTGAACCCTACGAGCTCTCGCCAATCCTTCTTCCTCCCATCTCTGTAACGTCGCTTCCACTGGCTCAACCACTC
TTCTTCGTCTTCTCGAGGATACAACAGAAGCAGAGGAGCTCTGTTTCGATCCGTTATCTTCCTTTTCCATTGGAAAAACA
CAACACGTACAAACTGTAGAAAATATTACGGAGCGCAGTACAATCACTATTAAATTTCGAACATAAAACCAAACAATAAA
CTATAAATTTTTGTCTGCATAGATTGTCCTAGAATTCACCAGAGCCTTCAGAAATTAAGGTGGGAACACATGTCTAGATA
CCGTCTAAGAGAACACGCGTGGTGCTTACGACAATTAAATGTACGGCTACAAGACACGTGGTGACTTCCCAGTTTAGGCA
GATTCTGGTATGCTAGGATTTGTTTTTCAATATGTTTTGGTCATTATAGATTTCTTTGCGGCTAAGACTTTGAAAATTAT
CGTAAATATCGTGAAGAAATAGATATTGTAAGTCTTGGGCACCAATCCACCTTAAATTGAAATTTTACTTTTTCAGTGTT
TTTTTGGCTTACGGTGCAAGCCAGCAATTTGACATCTTCCACTTATTACTTTTCTGACAAACGTGTTTCTTTTTTTCTTT
GTTTCAAACTATACTATAAAAATAAATTATTATTCCATGGTTACTTTTTTGAAGACGTTTAGTCCGAGACTTTTGGTACT
CTCATTGGACTCTTCCCAGCTCAAATTGCGCGCCAACTAACAAACTGTAGCTTTTGCCTTCGCAAAGAACAATTTCTAAG
TCACTGGCATTGACAAATCCCAAGTTCAAGGAGATTCTAGTTTCCGAGGTCAATACAACTTAGGATATTGCTTTGCTTTT
GGTTATAGAGATATTTGCGACTAAGACTTTGTACTTTTTTGTAATTTACTAATTTTCGTTGATGGAAGATGTCAAATTGG
TGACTTATACCGTAAGCTAAAACCCTTAAAAAGATAAGAA