| Basic information from miRBase |
| hairpin accession number: MI0008239 |
| Located between position 23075358 and 23075467 on chromosome 03 strand + |
| mature miRNAs for MI0008239: |
| osa-miR1428e-5p (MIMAT0007784): AATTCACAGGCCCTATCTTGTG |
| osa-miR1428e-3p (MIMAT0007785): TAAGATAATGCCATGAATTTG |
| References |
| [1]Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C, Genome Res. 18:1456-1465(2008)., "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains" |
| [2]Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M, BMC Plant Biol. 8:123(2008)., "Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice" |
| [3]Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TAACTTTATTACTAAATTTGTAGTTTTGCGATATTCCACTTTAAATTTGTAGTTTTGTGATAAATTTAGTATTAAATCCA
TAGTTTTGTAATACACCATGTTAAATCCGTAGTTTTGTAACACATCATGATAAATCTATAGTTTTGTGATAACTAACCAA
AGTAACTATAGTTTTGTGCAAAAGTAAATTACACCAACGGTCCTTAAACTTGTAAGAAGGTTTCACCTAGCTCCACAAAC
TTGCAAACCGCTCATTGAGATCTTTAGGCTTAGTTTATTTTATCATCGCAGTTAAAAGCCTCATTTGACTTTGATCTTGT
CAAAGTGGCATGCCACGTGGATGATCACATGGAAAAAAATCCCCCCCCCCAATTTTCTCCCTTTCTTCTTCTCTTCATAC
TCCACCACTAAATGCATCGGCGGTTGACAGTGGTGGGACTGACTGCAGACAGAGAAGGGGGGGGGGGGGTGGGGGGAGGC
AGCGAGAGAGACGATGTCGGCCATCAGAGGCAGAGGTGCCGATGGCGGGGTCAGCCCGGCAAGCAAACGGAAGCTGGGAG
GGAGGGGGGGGGGGGTAACGGCCTCATATTGGTTGAAGCTTGGTCAGGTTGGATTTGAGCTGGAGTGGGGGCCCTAGCCA
GCGGAGGAGCTCGCAGCCAAAGAAGATGGGTGTCGGTAGATGCCTGCACCAGCAAGTGGCACAATGCTGTTGCTACTCCC
TCATCCGCGACCTATCGTGACTTCGTGAGCGCTGCTGCTGCCACTGCTTCTGCTCGGTTGGGATTCCTCCCTTCCAATCC
GATTTAAGTGGTGGTGTGGATGGTGTAGATGGGGAAAATGGCATGGAGCTGTGTGGAGCGTCGTGTCGGAGTGCTCGTAG
CCCTGGTGCCGCTGGATCCCGTCCCCTTGTGTCGGTTGCGTCAGATCCGACCTGCCCGATGGATAGCGGCGTTGGATCTG
CTGTCTCCTTGCATCACCGGCACCCTGTTTGAGGGATTGTGGCTACAGACCCGCAGGGGACAATATGAGAGAGGAGCACC
TCGGTCGGGACCGAGCCCCGTGACAGGGTCATAGGCTTGGTCCAGGCAGGCGTCTCGCCTAGCTTCCTCTGGATCCACTC
ATGTGAAACAAACGCCACCGCAACCACCGAATCCGCTCGCCGTTGGGCCGTGGGTGAAGCCGACAGGCAACACGACATGC
ACGGTGGAGGCAAAGGAGGAAAAATGAAAATTTTGCCTTGGTATCGTCCATGTGGCATGCCACATAGGCAAGACCATACT
CAAACAAGGCTTTGGATTGGGATAATACAATAAACTAAGTTTAGGGATCTCGATAAGGGTTTTGTAAGTTTATGGATCTA
GGTGAAACCTTCTTATAAGACGCAATTTACTCTTTGTGAAATTTATTCTAAAGATTATTATACATGCTCTCATAAAGGAA
AAAAATTAATAAAATATTGTTTATCGATCTTTCTTTCATAAATATACTGGATGTAGATTGATTTGCATAAATATACCATC
GAAATCGTCATTAGAAAGCGTGATACCGAGGTTCGCAACGGGAAAGTGCGATATCGCCACTGTATCGCATTACCAATGCG
CGAGAGCATGATGGTCTCGCGCGTCGAATGGGCGAGGAGATTTGAGCTGGCGGTGTCGCTTGTTGGCTATGCGATATCGA
CGCGGTATCGTGTTTTCATAGAGTGAGAGCGCCACGTCGTACCGATTTGGGATGGAGTAGCGCCATCGGTCTCGCTTATT
AGTAGCGCGAGAACGGGATCGCTATCGGGTTTAGACGCGCGAGAGCGTGGGCCCGCGGTGTTGCACGCCCGAATCGCGAG
AGCACAATCGATATCGCTCTTTCAGAGTGCGATAACAGGTGTGGAGTAGGTCCCACAGGATTTTTTTTAGTTGGGAGATC
CGGCAGCCGTGGTATCGCACGGTGGGAGCGCGAGATTGCTCGGAGAGTCGGAGGGGAGGCGCGGTCTCACACGTTGGTTT
TGCGAGACCGAAGCTGATGTGACACTGACACCCTCCCGTCAAGCATTCACTCACACGCATTATCAATAAGCACACATGCA
ATCACAGTAGCAAAAATGGAACACGTCAATAGTAAACCACTGCATCCGAAAAAGTTTTTCAATTAAGCGATGTACGAAGA
TTGTCATGAAATAAGCTGCACACCCCTTAATTTCTAATTGCTCACGCGTGATTAATTTATTTTTATACGAAGTTTTCTAC
GTAATTAACTTAACATTAACACCATTAGGCACGCAGTGGGGCTCACCTGACCGCTCTCGCGTTCCTCTAGCGCGAGACCG
CGCCGTCGCAGTCAGGGGCCCACCGCTCTTGTGTTCCTGTAGCATGAGACCGCATGGGTCGCAGTCACAGTTACTGGGCC
CACCGGCTCGCTCTCGCACTTTTAGGCCATTCACAGTGGAAGCACCGGCTATGAGGTACCACACAGTGACACGTAGGATG
AAGAGCTTCAGAGCCAATTTCTTCATAGTGCAAGCACTGAGTGGGACCCACCGAGTGGGACCCACGGATATCCTTCCCCC
CTCCCCCTCCCCTAAAGAATTAAATTTGAAAATATACTGTTCATTCAATTTTTTCTCAGGAATATTCGGGATGCAAAAAC
TTGTGCAGAAATATACCATCGATGTCGCACTTCCATTGCGCGAAAATGACGTGGGGATGACGTCGCGGACAGTACCGCGC
GGCGAAAGCGCGAGACCGCACGGGTAACGGCGCGAGACCGCACGGTCTCGCGTAATGGAAGAGCAAGACCGAACAGTCTC
GCAGAAGCCATCAGCGACACTGTCCAATGGGATCCATTTGATTAGTGATTAAGTACTTAATTAACAATTAACTAATGATA
ATTTGTGATTAATTATCTTAATTAGTGATTAATAAATAAATAATTAATTAATCACTAATTAGGATAATTAACCGCTAATT
AAATCGGGGAGGCACGGTATCGATCTTTGCTTGAGCGATA