| Basic information from miRBase |
| hairpin accession number: MI0005396 |
| Located between position 771337 and 771562 on chromosome 2 strand - |
| mature miRNAs for MI0005396: |
| ath-miR840 (MIMAT0004262): ACACTGAAGGACCTAAACTAAC |
| References |
| [1]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [2]Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" |
>promoter (3kb upstream pre-miRNA, by PMRD):
AAGATTGCCAAAATTCTCAAGTTAAGTGATTACAATAACAAAACTTTACCTCCATCCCAAGGGGTATCATCAGGCCTGCA
AATCCACAATCAGAAGCTTTAATAAGTACAGTGCAGAGAAACCTATCAAGTATCGTTTTTTTTTTTTGTTACTTTAGTTC
AATTACCCGAATATAACAGCATTCCACAACATGATATTGTTGTCTTGTGGAGCACCACTAATTCCTGCAGGTGGGTCTTG
CTGCAACCTCTTGAAATCCCTCATCAATCTCTTCCTCGCTGGAGTCGACATCCTTCTCTTACTCTATCAAATCCCAGTAA
CCAACCATTACAGTATTTCAAAAACCAACTATCTCAGAGCTTGGATATGCAATTATCTCAAACCATTTGAATCTGCCAAG
CAAGTTTATAACCTAACCTAATGATCATCACCTAAATAGCTTATAAGCACAACTAGGAAGCTTTGAGATCAATTCTATAC
AAAACTACACAATTCTCTTTAACCTAGGAAGCTTTGAGATCAATTCACACGAAAATGTCCAAAGGATGATGATAACATCT
GAAAAGAAACTAAAATCAATGGATCTAGCAACGAATCATCGTAGAACAGAAATTAGAGAACAAGAGAGAGATCTCACTGT
TGTGCGAAAAGGTAAAAGATCGGTGGAGATTCGTCGTCAAGCAAGCATCTCTCAGCCGGAGAATTCAAACAACGACGATG
AGAGAAAAAGTCTCCGATCAAAAAGCTCGAGGATCCTCGAATTCACCGAGCGATGAGAGAAAAGAGAAATGATGTAGAAG
TTCGTATAACGCACGCAGTGGTGTGATCTTCTAGAAGCTTCGATCTAATCAACACATATCTATTTATCTCTCTCTCTGTG
TACAGTCAGAGAGACTTCAGATATTTTTTTGTTCAGGCCATGCGAGTGGCACTTAACCGAAATTAAACCGGTTTTAACCA
GATTTGTAAACCAAATAAAAGAGTGATTTTGATTTTGATTTTGTTCATTGTTTGTTGTCGACGACAATGGAGGAGCTTTG
ATGTGTTCGTTCTCTCGTTTACATTTTGTATCTTTCTAGATGATAAACCTAACGAGACAGAGATACCGAGTCTCGAATCT
CGTGACCGGTGGAACTTCGCTGGATGTGATTTTGTCTCACTCTCCTAACAAGTTCACATTCCCGCCTCTTCTTAAATCAT
GCGCGAAGCTTGGAGATGTTGTACAAGGTCGGATTCTGCATGCCCAAGTCGTCAAAACTGGGTTTTTCGTTGATGTGTTC
ACGGCAACGGCTTTGGTGAGTATGTATATGAAGGTGAAGCAGGTGACGGATGCTCTTAAGGTGCTCGATGAAATGCCTGA
GAGGGGTATTGCGAGTGTTAATGCAGCGGTTTCTGGGCTTTTGGAGAATGGGTTTTGTAGAGATGCGTTTAGGATGTTTG
GGGATGCTAGGGTTTCTGGGTCTGGGATGAATTCGGTTACCGTTGCTAGTGTTTTGGGTGGTTGTGGGGATATTGAAGGA
GGGATGCAATTGCATTGTTTGGCGATGAAATCAGGTTTTGAGATGGAAGTTTACGTTGGAACCTCTCTTGTTTCAATGTA
TTCGAGATGTGGAGAGTGGGTTTTGGCTGCGAGAATGTTCGAAAAGGTTCCTCATAAGAGTGTTGTTACCTACAATGCTT
TTATCTCTGGATTGATGGAGAATGGAGTTATGAATTTGGTTCCTAGTGTTTTCAATCTCATGAGGAAGTTTTCAAGTGAA
GAACCAAATGATGTTACTTTTGTTAATGCAATAACTGCTTGCGCTAGTCTTTTGAATCTCCAGTATGGTAGGCAACTTCA
TGGTCTTGTCATGAAAAAAGAGTTTCAGTTTGAGACAATGGTTGGTACTGCTCTCATTGATATGTATTCGAAATGTCGGT
GTTGGAAATCAGCTTACATTGTTTTCACCGAGCTGAAAGATACCAGGAACTTGATATCTTGGAACTCTGTTATCTCTGGA
ATGATGATTAATGGACAGCATGAGACAGCAGTTGAGTTGTTTGAAAAGTTGGATTCCGAGGGACTTAAGCCTGATTCAGC
GACGTGGAATTCACTGATCAGTGGCTTTTCACAATTAGGGAAAGTAATTGAAGCTTTCAAGTTCTTTGAGAGAATGCTAT
CAGTAGTTATGGTTCCTAGTTTGAAATGTCTCACTAGCCTTTTATCTGCTTGTTCAGATATTTGGACTTTGAAGAACGGC
AAAGAGATCCATGGGCATGTCATTAAAGCTGCAGCGGAAAGGGATATATTTGTTTTAACGTCTCTCATTGACATGTACAT
GAAATGTGGGCTCTCCTCGTGGGCACGCCGGATCTTTGATCGATTTGAACCGAAACCCAAGGATCCCGTGTTCTGGAACG
TTATGATATCTGGATATGGTAAACATGGAGAGTGTGAGTCTGCAATTGAAATATTCGAACTATTACGAGAGGAGAAAGTA
GAACCGAGTTTAGCAACCTTTACTGCTGTTCTATCTGCGTGTAGTCACTGTGGCAATGTCGAGAAGGGTTCTCAAATATT
TAGGTTGATGCAGGAAGAATATGGATATAAACCTAGTACAGAGCACATAGGTTGTATGATTGATCTTTTGGGTCGGTCTG
GGAGATTAAGAGAGGCCAAGGAGGTAATAGATCAAATGTCAGAACCATCGTCTTCGGTTTACTCTTCCTTGCTCGGTTCA
TGTAGGCAACACCTAGATCCAGTTCTTGGAGAGGAAGCGGCAATGAAGCTAGCAGAGTTAGAGCCAGAGAATCCAGCTCC
ATTTGTGATCTTGTCCAGTATATATGCTGCATTAGAAAGATGGGAAGATGTGGAAAGTATCAGGCAGGTAATAGATCAGA
AGCAACTGGTGAAACTTCCAGGTCTTAGTTTGTCTGGTTAAGTATATGCCGACTGGTCGAATATGAGCAAAGGCAGGGAT
CTCTTTGGGGGAGTATTGACTTGCTCTTGACTCGGGTCTC