| Basic information from miRBase |
| hairpin accession number: MI0000215 |
| Located between position 11942914 and 11943015 on chromosome 2 strand - |
| mature miRNAs for MI0000215: |
| ath-miR172a (MIMAT0000203): AGAATCTTGATGATGCTGCAT |
| You can find this miRNA in EMBL: ATH496802 (accession: AJ496802) |
| References |
| [1]Park W, Li J, Song R, Messing J, Chen X, Curr Biol. 12:1484-1495(2002)., "CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana" |
| [2]Mette MF, van der Winden J, Matzke M, Matzke AJ, Plant Physiol. 130:6-9(2002)., "Short RNAs can identify new candidate transposable element families in Arabidopsis" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [6]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TATCGCGGATGCCCACCACCAACCAACGATACACAAGTCCTCCTATTGAGATGAACAACAACCTTCAGATTTCAGAATTT
TTAAGCTTTATAACCTGATAACCACTGCCCAAACTTTCTTTCGTATGTGGTGATGTCATAAATCGACAAGAAACAATAAA
CATTAAGATTATGTGCCTTCATTGGATCATGGACTGAAAATTAAGCTCTTCGATCAACTAAAACAAATTTATCATCATTG
TTTTCATACTCGCTGCTAAGTTTGCAGGGGAGTATTAGAGTCCACAACTAAAACAAGTCCAAACCCAATGTGAGGTCTAC
ATAAGTAGAATTTTAACAAGTTAGAAGATTCATATAAACAATTATGTAATGAGAACTATGATTGTAACTTTGAGAGAACT
CTCTTCCTTCATCTTATGAAATATCAAATCTAGAAACATTGGCTTTTGGTGACAAACCTTAAGCTCCTTTACATTTTTCT
CTTCTTTACATTTCAATAAAGCTCACTAGAACTATTGCATTTCTATCTTTATATAATAAGCTCAATGAACATCAATCTAT
ATTTGTCTTAAAAATGTCAAATAAATAGAAGTTTCATGAAAGGACCAGACCTCGATCAAGTCTGAGAAGCATAGACAAGG
AGTGAAGATTTAGTCTCGATAACACCATTCTTAAGAGACGAAAAAAGGTAAAAGATCGAATCGCATAGAATCAAAGAAAT
CTTCACATATTCAGAGGAAAAACAGCATGTCTAGCGAACACTAGAGTCGAACAAAAGCAAACCACCAATCACACATCCTT
ATTTGTCAATTATTTATTTTGGAAACTAAAAAGAAAGTTAATGAGTAAAATAGTTTCCATAAGAAGAAAAAAAATGTTTT
CTGAGGAAAGAAAATGTTTTCGAAGGACAGCAAAGTTTAAGCCAATAAGCAAAACAAAAGCTGATGCTTGTCGCGACTGT
GTTCGTCAAGAATCTCCAGGACGAACCCAATCTTCTCTCTCGAAGCTGTCTAAAATTAATCAATCAATCATTGAGCTAAT
CATATTCTAGGTTAAGTAAAAACAGAGTAAACCCTCTCTTTTTTTCTCTTTCTCTGCCTTTCTCAATTTCGTTTCGTCTC
CTTCGTTCTTCCAATTTCCGTCTGATTTTATACGAAATTTGCATTGATATCGAAGTAAAATCGAATACCCATGATTCAAA
ATTTCATTTTTTATGCGACTGATTCCTCAATTTTGATTTTCCGGTGATTTCTAGGGTTTTCTATTAGGTGGGTGTTATTT
ATCATTTGATGGGTCATTTACTGATGATTTTGCAGGTTTTTGTTTTAAGGATTTGTGTAGACTTTCATTGCTGCTACGTT
TTTGAAAGGGTAATTTGAAGGGCTTAGCTTCCCAAAGGTGAGAATTTTAACTCCAGTTTGGCTTCTGATATTGTGTTCAT
TGTTATGTATTTTTAAGCTTAGTAGTTGTGTTTTAAAGTTGTTCCAGTTTGGTTGATAAGTGTGTATGTGTGTTCATCAG
ATTGGGTGAGTACAGTTCTTTCATTGATATCTCCAGTTGATTTGTGGGAATTTTGTTCTGTGTGTATAGGATTTAGACCT
CAAATATTGGATTCTCTTTAAGCATTTAAGTGCCTGGTTTCTTCATCATCACTTGATAGGAGGACTTTACAAATTTTATT
CTGAACATGGAATTTGGTTAGCCGAATAACTTCGTGGGGATTAGTTTCTCGTGCAAGGAAATTCTTCATGGTTCTGTCTT
GGAAGTGTTTGGAATCTTGAAGCTTGATAGATTTTCGATGTAGGCATGATGCGGTTTTCTTATAGGTTTAAAGGGTCTTT
AGCTGAGATATGGTTCCTATGGTGTGTAATAGGTTTAAAGGGTCTTTAGATGAGATAAAACTGTGCAAAGAGTTCATATA
ATAAATGGTTAAATCCTATATATTATCTGTTCAGTGTACATAGAGAAGAATTAGCTGTGGAATTTGGATGTACATGATAA
TAACAATGTAGTTTATGTCTTCCAACTTGTCTCTGTTGTGATAATGATCAATGTGTTTCTATTCTAACTCCTGTGGTCCA
TTGATTTTTGAATCCTTTGTCCACCTTAGTACTTTCTTCGAAGAAGGCATGGGAAAATATGATTCTCTGGTCCAACTTTC
TTAAGACTGTCTGCATCTTTGGATCCTTAGATTTGTCTACGGGATTATGAATTATTTGACTTTTGATACCGATTAGACAA
AAGTCTTACATTTCACACAAATAAGAGTTTGCATCATTGTAGAGAACAACATTGTTTTCATTTCTGCTTCAGTGTTTTTG
AGTTGAAATGTAAACACCTCTTTCTCTTAGATTAGTTTGAATGGCACTTGAGCTGGTGTGACCTACATTCATTTTGATTG
TTTACTTTGCATGCTATTGCGGTTTAGTTATGATTATATTTTGTTTCAGGCACTAGGTGGCAATCTTATCCAAGATGAAC
AGTCAAAATCCTGATGATCATGTAAGCCAGCTAAAACACCTTTTTGCCTTCAACCAACTAATCGAGTAATTTCCAGTCTC
CCGCTCGATTTTTCAATCTTTTATCGTTTTCTTAAACATAGGAGGACACAACGGTTGTGGGATTTGAAGTACCTGTATCA
CCGGTTTCAAGTTACAACAATGTGTATTCCTCAACCGAAGATGAGACAAGAGATCCTCCAGCAGTACCGCCACACCTTCA
ACACTCTCTATTAGGCAATCAGGGTAGCATGGAACTGGCTTATGCGCCACAGAATGTTGTCCTGAACCACCTCTATATCG
AGAACCGAGACGCCCCAAGATCTGTTGTAGCACTCGGTTTCTCGCATCGGTTCAGGACTAAGTTTGTCACTGTGGTGATA
TACAAGCCTGTCCAAAGAAGAGGGAGCGCCAATGTTTGAATAATGATACCTCTTTTTAAGTAGTGTTGGGAATTTGCTTC
TTTATGGATTGAATTTGGTATACAAAACCATCTGGTCCGT