| Basic information from miRBase |
| hairpin accession number: MI0000216 |
| Located between position 1188207 and 1188301 on chromosome 5 strand - |
| mature miRNAs for MI0000216: |
| ath-miR172b* (MIMAT0000204): GCAGCACCATTAAGATTCAC |
| ath-miR172b (MIMAT0000205): AGAATCTTGATGATGCTGCAT |
| You can find this miRNA in EMBL: ATH496803 (accession: AJ496803) |
| References |
| [1]Park W, Li J, Song R, Messing J, Chen X, Curr Biol. 12:1484-1495(2002)., "CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana" |
| [2]Mette MF, van der Winden J, Matzke M, Matzke AJ, Plant Physiol. 130:6-9(2002)., "Short RNAs can identify new candidate transposable element families in Arabidopsis" |
| [3]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets" |
| [4]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [5]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [6]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [7]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
AATTCATAAACTGTAATTGTAGAAATAGTCATCCGCAAATGTACAAGGAAATCGGTTTTGTTTTTCTTTATAGGAAAATT
TGTTAAACTAAGTTTCCTTTCGAATTACTAAAATGACTCTCAAGATTCGAGGGAAAGTTTTATAAGAAATGCATATAAGA
AAGTTTAATTGTAATTAATACCACTTGGATTATTAATTTAATATAATGATCCAGTTGGTGCTTAAACATTTTTAAACCTA
ACCAATATTATTTTGTACATTTCGAGAGATTCCAACAAATTAAATAGGTCATATATGACATAGATCTATAATAGTATATA
CTGTTACACTTTGATTATTTGACCTAATATACCATCTATTTAATGTCATCAAAAAGTTACATCTAAAGATACAAAAAAAA
ATCATATACTAAATTTGTGTAAATAAGATTCTAAAGTATAAAATACAGAGAAATGGAATATAAAACCAAAAATATATATA
ATCTATGATAATGTGGACAGAGGCAAAGGTACCAGGTTGTCTGCCATGATATGGGTAGATAACTCATCTTCCCAAACAAA
ATAATTGTGTGCGAAGCTTTTTACTATTGACAAATTTTAATACTTTTAGGAAATTTTTGAGTATCTATAAATTTTGAATA
TATGGTTACAAAGAATTATAGATGCTAGGGTTTCAAGACGTATGTTCTAATATCCTAACCTTTTAGAAAACTAGTGGTGC
ACGAACCACATGTTAAAAACTTGATTTGATTATGTATATGACCAGGCAGTTATCGTAAATACATTTGAACGTAATTTCAT
AGTTAAGAGTTTGGAATAAAAATTACAGTCACAAGTGAAAGCCAACATTTTCGTTATATCTCAAGGCTTCTTTATTTTAT
TTTTTGTTTTTTTTTTTCTCTGTAAACCTTTCATTTTTCCCTCTTCAACGTCAAGTAATATTTATTCTTCTTTCATATAA
CTAAATTTTATTATACTACTCAATTTGTATTGTTATTTTAAGATCAAATTCACGGATATTTTATCTAGTATCTTGTTATT
ACTGTTACTGTTTTGACTATTCTTGTTTTTGTTTTGTAAATATAAAAAAGAATTAAATTTATCACATTTAGGAGAAAAGA
CATCACTTTCATTGAAAAAAGGAGAAAAATAAGTGGGATCCATGAGAATGAAATGCTTTTTTGTTGTACATGTACGTATA
ATTTTTGGTTTTTAAAGTGATAAATTTAGTTGTCTATATGTTTATTAATATAAAGAAGTAAAATAGTAATGCATAGTGGT
GTTGATCTCTAATTTTATATAGGCTTGTGGCTTTTGATGATCTTCAGGTGAAAGTGTGGGAGACAAGGAATATCTCCTTC
GTCTTGAAGTGTACTATGTTTATCAACTTGCCCACTGCACTTTACGTGTATTCACACTCAGTTCCAAGTCAATTATATAT
ATAAATATGTAACTAATTAATATTAATATGTTATCTAATCCTAATGTTAATCTAATTGGTGGATGTAGTATTAACACTAA
TGCTCTCCTGGTATCGTGAGGAATATTCGACAACGCTTTAGAGGAGCTGGGAGTCGATGATAAATTAAAAACCACTGTGA
CCAGGAAATTAATAATTGTTTTGTTTGGGGGTGTTTGTTTTGTTTAATGGCTATGTCTTTGAAGTTCTTGTAACAGAAAC
ATATTTGTTCTCTTGATTCTTTATTAAAACATATATACACTATCATTTTCACAAAATTAAAGTATTATAATCATTTCAAG
ATTCTTATTTTTGCAGTATCATATATACTAATCACAATGCTAATTAAATGTTAGCGATGATGAACACATATAACAAACAT
CGTATTCTTTTTATATATTTTTTAAAACGATATCCGTGATATGTTTTGCTATATAAACATATAGTATAGTGTTTTTCTTT
TCCGTATCCATTTGAGAACAAGGGATATTTAGTGTTCGAACAATCAGTTATTTGATATGCTTCGTCAAAAAAAAAAAAAA
AAAATCATCAACAAAAGAAATATTGTGATATTCATATAAAAATTATGGCCTTAATTAATGATATTTTTATAGATTCATAT
AGTTATGTGCATATTTATAAAAGCAAACATATATATTATGTCTATATATATCTTTTTGGTCAACAAGTTCATACTGTATA
TGTTCGAACATATATGTTAATGGGTTATGCATTAGCGGAATTTAATCTACTATTAATATTACTACCATATCCATTAATAT
TTGGTATTAAGGACTTGTAGGACTCAGATCTTAAACTTCGATATCGATTTAGAGACAATGAACCATAAATATGGTTCGGT
CCGGTTCAATTTACCGAAGTCATTGCGTGTCTCTATAAATACCACACTTCACCTTCTTCTTCACTTGCACCTCTCACTCC
CTTTCTCTAACTAGTCTTGTGTGCACCCATTTATGTGTACGTACTATTATCTCATAAATAAATATTTTTAAAATTAGATG
CATTTATTGATATGAAAAAGTTACAAGATTAGTTTGTTGTGTGTGAGACTTTGGATCGACAGATCGAAAAATTAACTAAC
CGGTCAGTATTGAATATCAACTATTATATGCTCCATGCATTCGCTTATAGTTTCACACAATTTGTTTTCTTCACGGTCTA
AAATCAGAAGATTCCATATATTTTCTTATGACGTAAAAGGACCACTTATAAGTTGACACGTCAGCCCTTGGATTCGTGAG
GTTTTTCTCTCTACTTCACCTATCTACTTTTCCTCATATCCCACTGCTTTTCTCCTTCTTGTTCTTGTTTTTCTCGTTTT
TTTCTTCTTCTTCTCCAAGAAAATAGAGATCGAAAAGATTAGATCTATTTTGTGTAGCAAGAAATTATCATTTTCGTTTC
TTCATTCATATATTGTTCTATTATGTTGTACAATAATAGATACTCGATCTCTTGTGCGTGCGTAAATTTTATACAAGTTG
TCGGCGGATCCATGGAAGAAAGCTCATCTGTCGTTGTTTG