miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



Basic information from miRBase
hairpin accession number: MI0001424
Located between position 23058034 and 23058156 on chromosome 1 strand +
mature miRNAs for MI0001424:
         ath-miR413 (MIMAT0001321): ATAGTTTCTCTTGTTCTGCAC

References
[1]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
[2]Jones-Rhoades MW, Bartel DP, Bartel B, Annu Rev Plant Biol. 57:19-53(2006)., "MicroRNAS and their regulatory roles in plants"




>promoter (3kb upstream pre-miRNA, by PMRD):
TTCATATGTTCCAAGTATACCGAGAACCATAGATTATACATATTATAAGCTGTTTAACGATTATAAATATAATGAAATAA
ACGTTTTAAAGGATCGATCAAAGCATGGTGGAGGAGATGTGATCCATTGGGAAAGGATTGCCCAAGACATTATCCATGAA
GTAATGGTGAGGATGTGTTGCGTCCATTACTACAAACTGCATGTCCTCCGACGGCTTCCAATGCCGTTTCCTCTGGTTTA
TGAACCAATTGTTTATCTGTTTCTGGTCCAGCCCCGTTGATTCCGCAAGGGCGAGCTTTTGTTGCTCCTGCAATTTCATA
TCACATGCGAGAAAAAATCAATCATCAAGTGTTCTCTCCGATATAAGGTCAGTCCATGATCACAGCTACATCACGATTTG
CTAGATTGTAAGGAGAACTTAGAATCCATCTACTCATACGAACATGGGTAATGACACTATACAAGTGTAATAAAGACATG
AGCTACTATTGCATTAGGGTATGGCCTCATGCACCCTACTTTCCAAAGTTATGACTTGAAATATGTGCAACAAAGTTTAG
TCTAAGTTATGGTACACAGCCATAAGATGAAATTGATCGTAGTCTTGACTAAGATTGACATATTATTCGGACCCTAAAAA
AGGTATGGAAGCAAGAATCAAGTTTGTCATCGGCTAATAGACCAAAACAGTACACATAGACTAAATAAGTTCACTTCATT
CAGCTTTTAGGATTTCAAATTATGCAAATGCATATTGTGCAATGCCAACATGAGCTAACATAAACTAATGTCCCTAACGA
TATAGTATGAATGCAAAAATCACTAAAAACATTGAAACAAGCTAATAGACAACTAAATTGAATTTGCTATCATATAAATG
CTTTTTTAAAAACATGAAATGATTATTTAATTAGAGTATAAGGGAAGAGAGTTACCGAAGGGTAAGGCCATTTGTAGTGA
CGGCTCCACCAATCAAGCAGTTGTTGACGAGCTTCTTTAGGGAGCTTTCCTTTCTTCCTCTTCTTCATGAACTCTTGCTT
GAGGCTCCCTAAGTAACCACTGTACTTGCGCAAGAGCTGTCCTTTAAGCTCTCTATCCTCAGCTTGTGGATCTACAAATT
CATTGTTCATATCGACTTCTTCCTCGGATGACCCATTATTGTTCCTATCAATTGCTGTCTCTCCATAACCTTATATTGAT
TAAACATGTGAAAGCAAGACAAATTTGTCAACAAGAACATGTGTCTAGGGAAATGAAAAAGAATAGGCTAGTGATCCAAA
TAATTCAAAGTAACATGTTAAGTAGATGTGAGTTTGTGTGTCTATATAAACTTAACTACATTCTTGAAAAGAAGAGTGAT
ATGACATTGTGTAGATATATGTATATGTGATTATACGTACAAAAACATGTGTATGTCTAAATTGAGCAATAGATCTAAGG
ACGAGCAGACTCTAGATCCAGATATTCTTTTTGATGCATTTGAATTAAATAGATCCAAAACAAACGGAGAAGAAAGAGAC
AAGAACAGTGATTGTTGTTGTACCAAAGCAAATGAATTCAATTCCAAACAAAACAAAAAAACAGTAAACAAACTGTTTTA
ATTCAATGAAAACAACTACATACACTAACTTATGTATAGATAGATTATACACGTAAACCTAGTAAGCTATATATAACAAT
CTGACACTAACCCTAGTAACAACCATCAAAGGGGTATTTACCCAAGAAAAATCAGAAAAAGGAAAATCTTTCTTAAAACC
CACAAAGAAAAAAAACAACTTTCCTCATCTTACGTTTAATTTGACGCCATAATTAACAAGAATATGAATTAAAAAGAAAG
AAAAAAAAACAGAGAACTAGAGAGAGAGGAGAGAGTAACCGGAGAAAGAGGAAGGTGAGGATAGAGAGAGGGATTTGAAT
TGACACTCGACACGTTGAAGGAAGACCATAGCTTCCTTGAAAGGTTTGGAGAGCTCTTGCTCATACTTAACGAGCATTTC
ACAGTAAGCTTCCATGAATTGATCAAGCCCTGGATCTTCACCTAGACATCCTGTTGGTCCCATAGATGCGGCAGCGGCTG
CGGCAGACGAGCATGCCTCCTCTAGCCTCGCCACAACCTCCGGTGGTGCTCCAACCTTAAGAAATTGTGTAATTAGTAAA
TGATAGACATAAAAACGTTAATTGAACTAAGATAAGGATCCTCACGTTTATTGTGGATATATAATATAGTAAAGAAAAAA
ATGAAATAATTATATATGTCCTAATCTTCAAGCCTACATACAATATTTTGGATAATCTCTTGCAAGTAGGGTTTTTACAA
ATTGTTTCTTGAAACTTTCTCAATATAGGAAAAATTGTATCCTTTGATTTGTATATACTTAGCTGGGTTAAGTAACTAGT
AAACAAAAGTAGATATCAAAATCAAACTCAGACATCAAGTAAAGGGTTATGTAAAAAGGAAATAAAAGGTAAAGTTTGGT
AATTAGGGTTTCTAGAATCTTTCTCTTCTTTTTTGTGCAAGAAAATCAAATAAGAATCATTAGAGTTACGAAGAAACTTT
CAAAGTAATTTTTTCAAGTTTCTTTCTCTCATCACCTTCTGACAATTGACATAAGCGGCCAAGAGGCGGTGGTAGTGAGG
ATGAGCCATGATCTTGGCCTTGACAGAGGCTGAAGAAGAGGAAGAGGAGCAAGGGTTGATTCCTCCTGCAACGATTTCGT
TATGATGGATCTCCATTAGAGAATAGGCAGGAGCACAAGAGGAAGGAGAAGAAGAAGAAGCAACTTTGTTCTTAGTTCCT
TGGGGAGGAGCTAGTGATTGAAGAAAAAGGGAACTACTTTGTTGGTGGTGTGACTGATATGCATAACCATCATGTTCTTG
TTGTTGATGTTGATGATCATGACCATGATGTTGATGTGATGTCATGATGGGCGGCATCATCATCATCATAGGACACATCG
GACCATCACTATTATCCCCGGCAAAAGCCATTGGACAAGA