| Basic information from miRBase |
| hairpin accession number: MI0001080 |
| Located between position 19319814 and 19320031 on chromosome 2 strand + |
| mature miRNAs for MI0001080: |
| ath-miR408 (MIMAT0001011): ATGCACTGCCTCTTCCCTGGC |
| References |
| [1]Sunkar R, Zhu JK, Plant Cell. 16:2001-2019(2004)., "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" |
| [2]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [3]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [4]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
CTAAAATAATTTCCAAAAAATGAGGTTCTAAATTTTCAAATAAACAAAACTTATATGAAATTTTAAATGATAAAGTGTTT
TTTAAAACTTGGCGTAATGGTTTGATATTGAATATTTCCCTGATGTAGGCCTATGGTATATGGGCATGAAGCTTGTTCCA
TTATCTGTACCAAAGGATAATCTAATTCTTTTTCCTCGTTCGATGAAAAGTTTATAAGAAGTTAAAACACATAGAAAACA
CTTTTATTATTGTCATTACTTTAGTTTTCTCTTCTTTAAGAAAACCGAGGATTTGTTATAAAAAAAACAAGATGAAGAAA
ACAGAGGAAAAACATATAGACTCAGTAAGAAGGAACTTATAATAAAGCAACATGAGTACTTGTCTGCATTGCAATATGAC
CTTAATTAGATGAAGCAAATTAACAGAGGAAAAACATTATAGACTTTCTTAAAAAGTTTTCATAAACCAATTTCATACAC
CAATTTTCATATACTTAAAAACTAAAATAATTTTCATATACGCTTTATAAATTATAATCCAATTGTGACAGGAACATTGG
CTTCTTGAATCCAGTTAATAGGACCTAACCAGTTAGCAGCTGTGAAGCCATTGACCTCAGCTGCAGACCTGGCAACCTTA
GCCCAGTTAACTCTTCTGTTAGCGAATGCTCCTGGTCCACGGTTGTTGTACTCAACGTACCTACATGACTTGTGGAAACT
TTCCCCATCCCAAATCTTCCACCCTTCTGGTCTAATCAAATCTCCCATCTCGGTGCTCATTATCACGGTGGTCGAGAATT
TCTTCCACGGCCTTCCCAAGTATGTCGCCACCGTAAGTCTCTCTGGCGTTAGTTTCCTGTCGGGCACGATGCGGCAGTTT
TGGAGGACGATACCAATTTTCATCCCTAAGCCCAATTCGTTTCCATCGGCTGTGACCGTGTTGTATTGTCCCTTGCTTCC
TTTACGGACAACAATTAGTGTGTTTTGGATCACGGTTGCGGATTTGCCGAAGATGAAGTCTACTGTTCCCGAGACCACAC
AGTTTCTGTAGAACTGACGACCGTTGTTAACGTACAATGTGTCTTGATAACCGTCGAATCTGCAGTTGAAGATCACGGCA
CGGTCTCCGTTCACTCGGATAGCCGCGGCTTGGTGTCCCATTGGACCGGCGGTGTTCTTGAATCCCATCCATTTCGCCAT
GAATCCTTCCGATTCAACCTCTGCACAATATATATATCGAAAACATGAATTATGTAGAGAAAAATATGTGTAACCTAACT
ACTGAATTAGGGTTTGATGAGACTTACGAACTGTGGCACTGAGGGATGTGGTGGTTCCACGGCTGAGAGCAACACTTCTG
TTGTAAGAAATGACGGTCTTTCTTGCACCATCTCCAAACATGAAGATGTTGTTCTTCTTCTTAGGGATGATTACTTGCTC
TCTGTAGAGACCGGCCTTGATGTAGATGATGCATCGGCCTCGGTTATTCTCAGGACAAGCATCAACGGCTTGTTGAACCG
TCTTAAACTGTCCGCTTCCATCCTTAGCCACCACAAAGTTCGTTCTGACCCTAGCACCGCCTCCGCGGCCGCCTCTACGG
CCACGTCCAGCCTTAGCCATGAGCTTCCTGTCAGCACCTGAAACCCATGTTGGGATTCCGGTCTCGTCAATGTCTTCAAG
AAGACGACGAGCAGGACCATCTGGGTCGGCCACGGGAGATTCATCAACAACAGGAGGGGCTCCGGGAGTGGGGATTCCGC
CTGTCATGTTCTTCAAGTCGTCAACCTTGTTGTTAATCTTGGCCATGGCGCTAACGACAGTGTGGAAGATGTCAATAGCG
TTGGTAGTGAGAATCTTGGAGTTTGCAATGCCCTCACCAATCGCCTTTCTTAAATCATCTTCTTCGATATCGTCAAGACA
ATCAGTTTGGTAATTGTAAACACCGATTAACCATTGTTTGAGCTGGTCGATTTTGCTCCCGATCTGGCTAAGATCTTCAC
CCATTTCTTCAATAATGGTAGCGAGATCCTCAAGAGCGTACATGAAAACTCTCTTGCAGTAATCAAGAACGGCTTTGTTG
TTTGGCGAGATGCTCGAGCCCATGTTTACTTCGGTTTGACCCGTGAAGTTAGACGATTTGGTTAATTCGTCTTTTGTAGC
GAGCATGAAAGCCTTGATCAGCTTGTTTGGGTCCTCGCTCTTGACCGGCTCGAGAGTTTTGACACATGAGGCTTTGTCGG
ATGTCGACTGGCAAATTCCTTGAACCGCTTTCATTTGGGGAGACAGATTAGCATCGCCATTTTTGTTTATGAAGGCAACG
ACTCCTATGGCAACTCCGACTATTAAGAGGATGGAGGCCACCGAGACCACAACTTTTCCAATCATTTTTTTTTTTCTGTT
TTTTTTTTTTTTTGGTTCTTTTTTCTCTCCGATCCCTCCGGATTTATTAAGGTTAATCGGAGAGGGAGAGGCTTTATTAG
ATTAAAGCCAAATTGTTGAATGACTTAGGCCAGTATCTATTGTGATGGATTCTGGAGGTTTATATAGAAGCTTTTTGAAT
TCTAAAATTAGTAACTTGCATGGATTTTGCATGGAGAGGGATTGATGTGGGTCAACGAATGGCTGAGAATATTTGGTCAA
AAAGCTTTATTTAACTTTCGCTGGAGCTCGTGACGTCGAACTTAGAAAAGGATGCCGAACGTAAATTTGCAGTTCCAAAT
CTTACTAAGGGTATTTACGTTATTTCAATCTTACGTCCATATATATGGAATTTAGGATTAACTTTCTATAATAGTCATTA
GTCCTTACTATAAACAAGGTCAGGTGAAATGATCCAAATATGGTTAATTTTTCTTATTTATTATCTAATTTTTCATTACT
TAAAATTCTAAATAAGGGATTTGTGTAACAAATCGACATTGTGTTATATATTAAGTTTGTGAAAATCCCTAATTATCAAT
TGACATTATTCAATGGTTAGTTTTTACATCGTATATCAAA