| Basic information from miRBase |
| hairpin accession number: MI0000212 |
| Located between position 4358994 and 4359219 on chromosome 3 strand - |
| mature miRNAs for MI0000212: |
| ath-miR169a (MIMAT0000200): CAGCCAAGGATGACTTGCCGA |
| You can find this miRNA in EMBL: ATH493654 (accession: AJ493654) |
| References |
| [1]Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants" |
| [2]Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP, Cell. 110:513-520(2002)., "Prediction of plant microRNA targets" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [6]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
CTCATCTTGATCAGTGGACTTTGCTGTATGGCGGGTATCGATACACCGACTAGATTCGAGACTCCTCAAGATTCTTAAGC
TGTTGACCTTAAGAGCCATCCCCACCTTTTGCTTTGCTTTTGACGAGTCTTTTCTTGTGCATAGTGCGCATTGTGGAAGG
TACTTCAATGTCGATTTGTTACATTATTACTTCAAAACAAAATCTGCATATGCCATAAAATCCCCTTGTATCATTTATTC
ATCTTGTTTGTGAGTCTTTCTTAAACGTCATAAATTAATAATGGAGAACGAGTAAAAAACCAGAGATACATACACTGGAG
AACGGATTACATTCTTTTTCAGAATTTTTTTTGTTTCTTTTTCTTAGATTATATTCCGGAGTTATCGTGCTCATAGTATC
GTATTCATATCAATTTGGGGATTCGGACATAGATTTTCTGGAAGAAAAAAACTCAGGACAATAATGTCGGTAGAGTCAGA
GTGGTAGGACATGTGTGTGTACCATCACTTGTATAGATAGATAGAAAGATAGATATAGATGATAGTTTTGTGAACAATTA
AGAAAATAGTAAGAATACATATATAAGTTTTGTCATGCAACATGCAATTCTAATCCAAATTTAATGTTTGCCTCGGCATG
TTTAGTCATTATTAAGTAATATCGATTGAGCAATTAGCAGTTTATAATTTATCTAGATAGACCTTTTGTTTTGACTATTT
CGTTGATTTGTTCCATGATTCAATACTTAGCAAAACATCTTCATATGTTGGGGTCCTTATGGTCCCTGCATGGACCTATT
GACAAAGTCATAAGATCAATCTTTCAGATTCTTTGATTGACCTCTCTCTCTCCATAAAGAAGCGTATAAAGAATCAAAAT
GACCGAAAACGATGGTTCTATTCATCTTTTCCCCACTATACATACTCCTACATTTATTCTAACATAACACTATTCGTATC
CCTGTTTTTTTCAAAGTTTATACTATAACAAATACATGACTGTATTTGTCTAATTACGAAGAAGTTTCAAAAGCATCATT
TATGAACAATGTTTATCTTTTTTTTTCTTACACAAACATTTATAAAAAATCATGTCACCATGACATGTAGCTTAGTTTTA
TACTAGCGATATTTTTGTGTCATCGTCCGAATTAGAATTTGCATATAATGCATATTATCGATAGAATTTATACGACTTTG
TTTTCTATACTGCCACATAATTGAAATTTAAAGATTAGAAATATTACGTATAGGTTTTTTATTGAAAAAAATATTTTCAG
TTTCGCACAAAAATATATGTAAAAAACAAATAGAGGGAAGCACATGAGACATAGGGGTTTGAGCCAAAAGAGCAGTGAAA
ATCCCATCGATCTGCCACTCCACCAACTGACATCACATTGTACCCATTTTCTTCTTCTTTTCCTCAACTATCCATTTTTC
TTGTTTAGACAGACACCCCCGCAAATATTTATTACCTGAACTATAACAACAACCAAATTTTGAAATATAAAGAACAATGT
TGAACTAACAAATTTGCTTCATCTTTTATTTGCTTTAGCTTTCATACGTAAAATCTCTTGTGGCGTTCACTTCAAATTTT
ATAAAAAAAAAAAAAAAATTATCTTCTGTTTAACAACATATGACATCTTAAATTGATATTTTAATAATAATGAAAAACTA
TAAAAATGTACGGCCACGCAAAAGTGACCTACTCGAGCAGGTCCTTTTTTGATCTTTTCGATAACTTTGAGATTCCAAGT
GCTGATTTCTGTGAATTTTTGTATATATATACACACATATTTTTGTCAAAGAAACAATATATATATATATATATATATAT
ATGTATATAACTGACGGTCTCTATTTACCGATTACTTGTTTATAAATTAACTTATACGGAGTATAAAATATAGATGTTTA
TTTAATAGTGCCCTTTCGAGTACCTGTCGGGATAACTAGCTAGGGTTACACGTAAATGTTGAGATTCTTTCTTCTTTTAA
AAATGTTTACGAGAGTCCCTTTTTCTCTCTTTCTACACACATTTATTTCTCTCGTGAGTTATTTCTTAGTAAGTCCTAAA
ATTAGAAACTTATAGTTCCTATCAACTTACCAAAACCAGGTCGATTTTGTGCAAGTGCGTCTTGTTTCTCAAACCACGTC
CCTCGTCTTAAATTTTTATTGCATATGCTTGTCTTTGCTCAAACAGAATCTATTTACCTAGGTCGTTAACCAAAACCTTT
TTGAGCTTGTTAATTAGAAACTTGAAATTTTCAAATATGTTAATATTAAGGTTCTTTGATGATTTATTAATTTAGAGAGC
ATTTAAATATAGGAGATTTTGTTTAAACGTTTTATCAAATTTCACATTTTTGGTCAAAGGAAAAGAAGGTTAAACACAAT
TCAAGAAAACAATAAGATGACAATTTTCGTTATAGACAGGAGCAATTTATGTGTCTATGTGAAGATGTATGTGTATATAT
GTATATGAATGAGTAGATATGTATATGGCCCCATATCTCTTAATGGCATCTGTTAAAGCTGTAAAGGTTTTTGCAGCTTA
AGAAAACTAATATTATGAGGATGGAGAAGCATGGAGGAACCTTATCTCTTTCATTAATTCTTTTTATTTTTCGAATATAT
ATAATTCTTTAATATATGACAACTGTTTTATATTTCTTTCAAATTAATTTAGGTTTTTCTTTCCTTATCTTTTTTTATTA
TATTTTTTTGCTTATCTACCTTCTTGGGGGCATAAAATCTCAAATCTTTCTCTCTTTTCAATTCAATTATTTTATTCCCT
CTTATTTCTCTTATCTCTGACCCATCTTCTATATAAACCCAGAGCGGGTAAGTCCTCTAGTATTCATAAGCACCAAAACA
AATATGTAGAGATCTCCTCTTCCATTCTCTATTGTTACTTTCGAGAAGAAACATACAAAACACATACATTTTTCTTTTGT
TTGTGGTTTTCATATATACAAGTGGGTATAGCTAGTGAAA