| Basic information from miRBase |
| hairpin accession number: MI0000976 |
| Located between position 8527469 and 8527649 on chromosome 5 strand + |
| mature miRNAs for MI0000976: |
| ath-miR169b (MIMAT0000906): CAGCCAAGGATGACTTGCCGG |
| You can find this miRNA in ASRP: miR169 (accession: ASRP1751) |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Wang XJ, Reyes JL, Chua NH, Gaasterland T, Genome Biol. 5:R65(2004)., "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets" |
| [3]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [4]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [5]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [6]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
TTATGCAATGTAGATGCTCTAACATTTTGTTGGGGTTAATTTGTTTAAACTTTAAACCCTAGCTAACATAGCTACGTAAA
CATTTGATATAATATACGTTTTAACAACAAATTTCATAGACTCAAACATTTGATATTTGGATTTCGATTAATAGTTTGCG
TTAAAAGGTGTTTTTTTTTTTCCAAATAAAACCTACATATTGAACACCATTTTATTAATTATTTGAATAATACTTTTAAA
CAAGAAAAATATTTTGTATTTTAAGAAAATGGTTTTCTAACGTTTCACATAAAAGATAAAACCACAAACGTGCAAGTTAG
TATTTAAAACAATCAAGCTCTTTTTTCTCTAAATGTAAATATCCATTATATTGTTTCTCATGATCTTTTTTTTTATTAGA
ATGAGAAGCAATGAGAGTAGTGGAATAGCAATAGACGTTGGGACTTACTACACGAGTCTAGAGCCATCACTCTACGAGGA
GGTGAAGGAAGAGCTAACGGCGCAGATTGGACCAGCGGTCGCATACGAAGTGAACGAACTAATGTGTTTCACAACCGAGG
TTGGGTTAGAGATAGATTCATTGCCTAAACTCACTCTTCATTTCCAAGGATTAGATTACACTATCTCAAACAAAGGACTT
TATCTCCAAGACAGCCCATCTTCTCTCTGCACGGCTTTGGTCAGATCATCGATGAAAGATGAGGAAAGGATTAATGTGCT
TGGAGCATCAGCTTTTGTTGATCATGCAGTTGGGTATGACACTTCACAGAGGATGCTTGCCTTTCAACAAAGGGATTGTT
TGGCCGATTTCGTAGATGGTATGTAGTAAACTTTTTGAGTTTTAATTAGTCTTTTTATTATCCAAATAATTGTTATAAAT
ATTTGTAGACATTATCATACATGATAATGTTCATGTTTATTTTGTTATTCCAACTTGCGACGTAGAGCATTGCAACTTAA
TAAACTGGCACAAATTAAAATAGCAAATTTTCAAAAATTCGAAGTTGACACTTTTCAGAAATATTTACCGGACAAGTAAA
CAATATAACCATGGATCTCGACTTGTGTCTTACCCGAGATCAGAAGTTGTATTCTTACCATTAAAACATTTATAATGGTC
AATTTGCCAATTATCACTAAGTCACTTTGTAGAATAAGTTGTGGATATGCATGCAAGAAGTTGACAAATGTCAATAAATT
TAGAAAACTAAGCAACGAAATCACTTCCCTATCTAATGATGAAAAAGTCATTTCAAAAACATTATCTTAGCTTTCAGGTT
TGGATATTTACATGTCCCGACATATATGCAATGAGATAGGGGCGGTGCATTTGTTGGCGGCGCCACACCTTTTAGGTTCC
ATTTTTGGTTTTCCATTTATTTCACATTTAAGATGATATCTATGTACATATGTCTATCTATAGAAGTTCTCAGGAAAAAA
TGTTCTAAAAGAAAAGTCCTTTAATACCTAATTAAGCCATACTAATACTGTCTAAGTATAACAACCTTGCAGGTTTATAT
CAGTGTTATTGTGTTACCTACTAAACATGTACATATATGTTAGGTAGTGGAATCTTCTTTTAAAAAAATTAAAACTATTT
TTGAGATCTATAACTACATATCATCAAGTAATTAACCCATCGAATCCACTAATACTAAACACCGGTTATGCTATATCCAT
TCTTAAATAAGGAAGGTCACTAGACCCATATATAAGCTTGAGTCAAGTCCTCCTTGTGACAGTCTTAAGCCTTATTTCAA
ATAAAGAAATATAACTTCGGTAATTTTAAAAGTAACCAATGTTTGGTTTGAGGTGAGGTTTGTATGAATTAAGGTGAAAC
CAAAGTATTGATCCAAAACCAAAAACACCAATAGTACTATTGGTTATTTTGTTAAAAGATTGAAGGTACGAATAATTGAC
AACACATCCTATATGTATGTTGCTAATGCTATGCACATTAATATGTCGAGATTTAGAAACATGAATAAATAAGCAAATCT
TTTACTATTTGCGCAAATCTGTAAAATAAAGGTATACTCAGATCTGTAATGTTTCTTTATATATATTCTCCTTCTCGGTT
TTTCTTGATTCTTATTTAGCATGGAGGCCAATCACCACTAATGCAATAATTCTTTGACTTCAAGATTTTTCTAAACAAGT
AAAATGTAGTAGGACCGTTGCGCGCACCAGCTAGCTTACTTATTCCTATCCCTTTCCATGTGGTTCCTTTCGGAAAAAAA
AGTATCATTAATTATATCGAATTATTATTTAGGCCGGTGTTACATAAATTTGTATACAATATAAAGTAGTTTTTTATATA
TATAATATACCAAAGTTGTTTACAAATTTTACACATGAGATATGTATAAATCAAATACCTTATCATGCGTCTTTTACAAC
CAAGAAATTCATCCACCTAATTTAGTTGATATACTTCACGCGACATCAATTTCATTTTGCTACATTATCATATATTGATA
TTGTTAATAGTTTTGGACTTTTATGGAGTTTTATGATCTAATTTTAGTCCGCATATCTCTCCCGAACAAAGGCCATGAAA
GATATTGACATATAAACTTTCTTCTAAATATGTAGCATTCTTAAATTTGGAAAAACTTATTAAACATTTTGTAATTGATT
TAACTTAAAAACAAAATAGATACCCATATAATAAGTTAGACTAAGAGAATCGATTGATGTAAAGATTTTGTGAAGTGTAC
AAGATTTTATGAGTGGATGGTGGAAAGGCCGGCCGTGAGAAAGGCCGAGTCTTTTGACATTATACCATAAGTGTTTGAGC
ACTAGAGCCACTTGCTATAGGAATCTTTAGCTGATGGTCGAATAATTATATCACCAAATATGTAAAATATATATAATATT
GGACCGGAGAGGTTGTATAGTTTATATGTCTCTCTCTTATAAATACTTCATATCACTCCACTCCCTAAACCATCACAACT
ACACACACTCTCTCTCTCAGATTGATGTACATTCTTGCCC