| Basic information from miRBase |
| hairpin accession number: MI0000977 |
| Located between position 15870590 and 15871000 on chromosome 5 strand - |
| mature miRNAs for MI0000977: |
| ath-miR169c (MIMAT0000907): CAGCCAAGGATGACTTGCCGG |
| You can find this miRNA in ASRP: miR169 (accession: ASRP1751) |
| References |
| [1]Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" |
| [2]Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC, Plant Physiol. 138:2145-2154(2005)., "Expression of Arabidopsis MIRNA genes" |
| [3]Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC, Genome Res. 16:1276-1288(2006)., "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" |
| [4]Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" |
| [5]Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" |
>promoter (3kb upstream pre-miRNA, by PMRD):
CAACCATTCCTAAGAAGGTAGAACGAGATTCATACTTACAACCTAGAGAGTAATTGCAATGACATAGTTGCCTTCCAACA
TAAATGAAACAAGAGGCCGATTCTCACTTTTTTTTTTCATTTTGAGTTCAATATTTGAGGAACCTTTTTGGGTTTAGAGT
GTTCAAGAATTCGGGAACTAAGAGCAAGCATACATCGTGTCATTTTAGCAAACCCATTGTTGTTTCTCTGATGAACTGAA
ACTGATCTTGTTTAAATAACGATGTTGCATTAGGGCAATCGGTTAGAGTTTAATATTACTATGAGACAAATAAATGGTCG
ACTTCATTAACAGCCTTTTGTTGAATGATTTGTTCATAATCTTTAGTATATCTGTTCACGCTCATTTGATTGTTAGAACC
AATCATCTCGATCTTAGCACATATTCAAGATCAGTTTTTAAAAATGTAACGTTAAGTTATGTTCAAAGAAAAAAATATCG
TTTTTTTTTTTTTGAATTTAACTATTTAAGTATATCATGAGAAATCTCAATCTAGTCAACACTTTTAAATGTAGTTGATT
ATGAATATATAGAAAAGTATAGACCAATTTTGTAAGTGAAATATATTGGTTGTATTTTCTTTAAGACAACTTAAAATATA
TGAAATCCATTAGTAATAGAAATAAATCAATTGTCGACTATTCTCGATATAGTCAAAAATTTTAAAAATAGAGTTGACTT
TGCAATGTATAAAAAGGTATTATGCTCACAAAGGTTTGGAATTATCTTCTCCCTTTAAAATGCAGAGATCTTAATGAGCT
TTGAAGAAATAGATGGAGATGATGATTTCCTAGAGGAGTTTACTTGCCTTTTTTTGCTGAGTCATATGATATCATTGGCT
TGTGCTATCACATAGACGATGAACATACTTTAGAGTCAAAGAACACGGTATTCCTCTCTTCCTTGCTAAACAATACTTAT
GCACACTGATTAGTATACAAAGTTTACAGCTTTATACTAACACATCATCATTAGTATACAAAGTTTACAGACTGAGATCA
GTTAGTGTAATGTTTTATCATTAATTCCTTCTGTGTCAAATAAGCCTTCAAAAAACCCATAATTGTTGGATTCTTCATCT
CCATCCAGTGAATGTGGCTCCATTAATTCAGCCAAGAAATCTTCTAAATCGTCTGGGATCATCACTGGTTGCTGTTGAAA
GCTGTTCAACTCAGAAAAGTTATCAGGAAAAGGCTGCAGCTGATGTTGTTCTGGAAGTAAACAATACTGTGGTTGATACA
CAATATCATGAGGCTGTTGCAGCTGCAACTGTTCTGGTTGATGCAAATCCAGCTGCTCAGCCAAATCATGAGGCTGCGGT
TGGCAAGAATCTAGAGGTGCTAGCGGTTGATGATACTCGGCATTACAAGGCTGCTGCCCTTCCGATGCTTCCACAGGTTC
TCCTTTCTTCTGCTTCTTCTTCTCTTCTCCAACTTCTTTGTTGCTTGTGGAGTAAGATAAATCTTGCACAAAGTGTAATC
CTAGACGCACAACAAAAACAAGACTCAAAACAGAATCCAAAACTTGAAAACCTAAATAACTTGGGAACCAAGACATACTT
ACCTTGTCGTTGTTGTGATCAAGAGAGTATTCTTGCATTAACCAATCAGTTTTGACGTCTTCTGATGGTTTCCTATCGTA
GTATGCAAGTGGCCTTTTGTTGCCAACGACACCATCTCCAGCGTTGATCTTTTGGGCAGCCACTGTTGCGTGCCAATATC
CTCCGTTAGTGTCAACACGTTTCTGCCTTTTCGCACCATTACCAACTCTCTTTGTTTGGCTTAAACCTTGATCAACTTTG
TTCCTCTCCGTTATAATAAACCATTCTTTATCGTTACCCTTCTCGAATTCCTCTGTTTCAAAAATATATATAGATATATA
TGTTAATCCCTTAATAAACTAAAGAATTCAACTAAGTAAACAATACATATGGACGGAGACAAGTTATCTGATAAGAATGT
CTCTTATTTATAAGAATGTAATAAGACGGTTTATAAAATTTATCGAAATTGAAATAATATGGGATTCAGATAATATCGGA
TTTGATTTAGATTTATCAAATTGAGATTTGGAAAAGGAAAAGTTTCATGTTTAGCTAACAAACTTTAAAATTGTGGAATA
ATGTAAGCTAGAGTGTAAATTACTCCAAACACAAGTTAACAAAGAAATAAACGTTGATTACAGAAAATGTGAAACAAATC
TATTTTTGAAAAACTTATACCATTTTCATGTTAAATTAGAAATAGTGTTGATTAGAAGAAAATGTTGAAAACGGTCTATT
TCTCCACGAGAACTATGACATCATGCCAGATAGAGCCCGATTTATGAAGACGATCCAGATGGCCCCGAAAAGATACTTCT
CAATCTATATCTCTATGAATCTATAGTTCAAAACCTATATCTATCCCATAAGCATAGTTTTCACCTATTTACCCACAGCC
ATTGATTTTGTTCGGTTTACTATTTTTATAACTAACTAATGAAAACACTAAACCAGAATAAACCTAATCTAACCGAGTAT
CACTAAATAAATAAATTAATTAATTAATTGAATTATTATGAAACAATAACAACACGATGACGTTCTTCTTCCTTTCAATG
GTGATGGTGATGTCGGCTCCGGTGATGGTGGCTATAGATATATTTTCCAGTTTTTCCCCTTTTCTTTTTATTCCTCATCT
CCACTCGGATCTGCTGCTTAAGCAAAGCTTCATCGACTTTGATTAAACTCGAATTGAGACCTTCCCACATTATTCCACCC
ATTGAAATCACTTGCTTCATTTTGTAGAAGATTGATAACGCTGAATCAGCCATTGTCGACTTGATGGTTTGTGTTGATTG
TTTTCTGGTTTTTGTAATTCCCAGATTGATTTTAAGATGAGCAATTGAAAGAACAGTAATAGAATTTGGATAAAACTTAT
TTAATAATTGAGATGTTGATTTTGTTTAATTGGGTTGTTC